prot_H-elongata_contig9387.16825.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig9387.16825.1
Unique Nameprot_H-elongata_contig9387.16825.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length561
Homology
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BLAST of mRNA_H-elongata_contig9387.16825.1 vs. uniprot
Match: A0A6H5JP88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP88_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.000e-5
Identity = 36/58 (62.07%), Postives = 40/58 (68.97%), Query Frame = 0 
Query:  474 LSSPSVRKNLARAARASKVGTKADPVTLYRQRQELEQARRISTAARNKGTRPGVERRG 531
            LSS ++R+NLAR AR SKVGTKADPV LYRQRQELEQAR    A   +  R    R G
Sbjct:  439 LSSVAIRENLARVARTSKVGTKADPVHLYRQRQELEQARTKKAAGVARSRRKPTSREG 496
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9387.16825.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JP88_9PHAE1.000e-562.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9387contigH-elongata_contig9387:1671..3353 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9387.16825.1mRNA_H-elongata_contig9387.16825.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig9387 1667..4965 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig9387.16825.1 ID=prot_H-elongata_contig9387.16825.1|Name=mRNA_H-elongata_contig9387.16825.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=561bp
MSKSRHLPHWPPRQSSFEDILPMMHNNSLGDAQALSKATTGPHGRGVPGP
PSVQKGSFEVGAEIACGGRGQSGRAFQNDDSVEIAPIFGGKCTSRASCSY
DALDLLDFSWDSSATAASLGGTAAAAAASIAVGEQQGDRLTSDDSRACIS
SDKAQADVTVPESSNHSVAATRVSKTRYAAPFRVRFSPATVVVSPCGEAA
KSAKAPWTTEDRKKNVTTLSDAAFAETASENSAPVTVGSYGALTDGQRFV
PRINGMHTAWRLHKPNNPPTGPPVSSKGDYPVPANDQAVIGTDKVFQKNI
VEQHQQHSGRLFLRRQARPILSQRSVNEALVTTSPRPPSKTITTTKRGEP
AARRVKFCEEDITDNGCSRDPLTISVESEGGQRYEIDRVRGGVSARVGSS
PADHHCPREIIIPPASWATNGPRRRSAYGAPNLATAARSLARSSGAVGGV
TTSANGRAGDADGNRLATAPGRLLSSPSVRKNLARAARASKVGTKADPVT
LYRQRQELEQARRISTAARNKGTRPGVERRGDSGSQSIGGRRDLSRGGQR
AGGSRGLSWR*
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