mRNA_H-elongata_contig93868.16823.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93868.16823.1
Unique NamemRNA_H-elongata_contig93868.16823.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig93868.16823.1 vs. uniprot
Match: D7G086_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G086_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 2.740e-38
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 QAYDPRDHLPPVIVIDGLLGRIRPGEDAPAAVEAVLRWCWTITGGRRLAHVVMTAPQSMAVDGSLVRMKTFLNDGRPSPG 240
            QA DPR+HLPPVIV+DGLLGRIR GED PAAVEAVLRWCWTITGGRRLAHVV+ APQS+AVDGSLVR+K FLNDGR +PG
Sbjct:  139 QADDPRNHLPPVIVMDGLLGRIREGEDVPAAVEAVLRWCWTITGGRRLAHVVLIAPQSLAVDGSLVRVKGFLNDGRLAPG 218
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BLAST of mRNA_H-elongata_contig93868.16823.1 vs. uniprot
Match: A0A6H5JKL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL7_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 9.480e-38
Identity = 67/80 (83.75%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:    1 QAYDPRDHLPPVIVIDGLLGRIRPGEDAPAAVEAVLRWCWTITGGRRLAHVVMTAPQSMAVDGSLVRMKTFLNDGRPSPG 240
            QA DPR+HLPPVIV+DGLLG IR GED PAAVEAVLRWCWTITGGRRLAHVV+ APQS+AVDGSLVR+K FLNDGR +PG
Sbjct:  153 QAEDPRNHLPPVIVMDGLLGHIREGEDVPAAVEAVLRWCWTITGGRRLAHVVLIAPQSLAVDGSLVRVKGFLNDGRLAPG 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93868.16823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G086_ECTSI2.740e-3885.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKL7_9PHAE9.480e-3883.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93868contigH-elongata_contig93868:374..1836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_000310.1
Hectar predicted targeting categoryother localisation
Exons3
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931335.4477496-CDS-H-elongata_contig93868:373..4461622931335.4477496-CDS-H-elongata_contig93868:373..446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93868 374..446 +
1691679794.6715033-CDS-H-elongata_contig93868:373..4461691679794.6715033-CDS-H-elongata_contig93868:373..446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93868 374..446 +
1622931335.4645877-CDS-H-elongata_contig93868:1065..11451622931335.4645877-CDS-H-elongata_contig93868:1065..1145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93868 1066..1145 +
1691679794.683267-CDS-H-elongata_contig93868:1065..11451691679794.683267-CDS-H-elongata_contig93868:1065..1145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93868 1066..1145 +
1622931335.480773-CDS-H-elongata_contig93868:1746..18361622931335.480773-CDS-H-elongata_contig93868:1746..1836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93868 1747..1836 +
1691679794.6968603-CDS-H-elongata_contig93868:1746..18361691679794.6968603-CDS-H-elongata_contig93868:1746..1836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93868 1747..1836 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93868.16823.1prot_H-elongata_contig93868.16823.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93868 374..1836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93868.16823.1

>prot_H-elongata_contig93868.16823.1 ID=prot_H-elongata_contig93868.16823.1|Name=mRNA_H-elongata_contig93868.16823.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
QAYDPRDHLPPVIVIDGLLGRIRPGEDAPAAVEAVLRWCWTITGGRRLAH
VVMTAPQSMAVDGSLVRMKTFLNDGRPSPG*
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mRNA from alignment at H-elongata_contig93868:374..1836+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93868.16823.1 ID=mRNA_H-elongata_contig93868.16823.1|Name=mRNA_H-elongata_contig93868.16823.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1463bp|location=Sequence derived from alignment at H-elongata_contig93868:374..1836+ (Himanthalia elongata Himel1 dioecious)
CAGGCGTACGACCCTCGAGACCACCTACCGCCCGTGATCGTCATCGATGG
TTTGCTGGGCCGCATCAGACCGGGTTAGTGACGCGCCCCCCGTCTTGCTA
AGCTTCCCGTCTTCTTTTGCCCATTCAATTAATGCGTTCTGATTCAAGTC
GAATTCTGGTACAAAATATAGCCCACGTGTTTTCTGACAAAATTTGCGGA
GATCGTGCTACGTAACAGAACCACTGCGGAATATCTTACCACCCGCGATG
TTAACCTCGCGACGAATGTGACGAAACGAAATGAAAGGAAACGAGTGGTC
CCAATTATAAACCTAACGTATCTAGAAAGGAAGTGCAGGCTATATATGTT
GGTGTCGGGATGCAAAAGGTGCGGCCTGTCCGCCGCGAACCGGCCGATTC
TTTTGTTTCTTGATTAATCGAGCTGGATAGCTTTATCGTGCAGAAGGCGC
GGGTGGAGGAGTATCTCGTTGTAAACTCCGTATGACATATTTTCACACCT
ACGACCTACGGAAGTCTGTATATTATTATTGAAGATATGATCGGCGATAT
TATTATAGTTTTATTATTAGAAAGCCGTTCCGCCCGAGAAGACCATCCAT
GGTTGGTTATATCCATGATCGATCATCCATGGTTGGGATACTCAGCACGT
GCCCTTACGCGCTTTCTCTCGTGGATCGCTGTTCGGTTTCAGGAGAAGAC
GCACCCGCCGCGGTGGAGGCCGTACTCCGATGGTGCTGGACGATCACCGG
CGGACGCCGACTAGCACACGTGGTGCGATACGATTGTGTGGCGTAATTCT
TGTACGATGCATACGATTCAGTACGTATCCCGTTCTATGGTTTTTATGGT
GGTATCATCACCCCCCCGAAACATTGTGAACATGGGACAATATGGTACGT
GGTACGGTATATGTAAGGACTTTAATGCATGGGCAGTGTGGGACGGTAAA
AAAATGGATCGGTGTGTGACGGCGCCCGACCCACAGAAGCTCTCTAATAC
AAAGCACTTCCTGCACTCTTTTTTTATACGAAATTCCTCGTTCATTGTCT
CTAATGTACTCTTTTTACTTTTACTTTCTTGTGCCTAACATTATGACCAA
GAGTTTTGTCGCGCTTTCGAATCTAACCATCCCTAGTGATGCGCATGGCC
GGGTGACATATCTTTTGTACCTCTTTTGAGACCGCAAACCGAGTCGACAT
TTATTAGGTCTCTTCCAGTTGTGTCATCGTGCCGTACTGTACCGCCTGAA
AGTTGTTATTGTAAGGACAAAAGGAATAAGTTGGAATCAATCGATCAAAA
TCACCAATCACCAATCACCTACCATATACTAATAATGGCAGATGATGACC
GCACTGGGTGTGACAATTGGCAGGTGATGACCGCACCGCAGTCCATGGCG
GTGGATGGCTCCCTCGTTCGAATGAAGACGTTCCTGAACGATGGCCGCCC
ATCTCCCGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig93868:374..1836+

>mRNA_H-elongata_contig93868.16823.1 ID=mRNA_H-elongata_contig93868.16823.1|Name=mRNA_H-elongata_contig93868.16823.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig93868:374..1836+ (Himanthalia elongata Himel1 dioecious)
CAGGCGTACGACCCTCGAGACCACCTACCGCCCGTGATCGTCATCGATGG
TTTGCTGGGCCGCATCAGACCGGCAGGCGTACGACCCTCGAGACCACCTA
CCGCCCGTGATCGTCATCGATGGTTTGCTGGGCCGCATCAGACCGGGAGA
AGACGCACCCGCCGCGGTGGAGGCCGTACTCCGATGGTGCTGGACGATCA
CCGGCGGACGCCGACTAGCACACGTGGAGAAGACGCACCCGCCGCGGTGG
AGGCCGTACTCCGATGGTGCTGGACGATCACCGGCGGACGCCGACTAGCA
CACGTGGTGATGACCGCACCGCAGTCCATGGCGGTGGATGGCTCCCTCGT
TCGAATGAAGACGTTCCTGAACGATGGCCGCCCATCTCCCGGGTAAGTGA
TGACCGCACCGCAGTCCATGGCGGTGGATGGCTCCCTCGTTCGAATGAAG
ACGTTCCTGAACGATGGCCGCCCATCTCCCGGGTAA
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