mRNA_H-elongata_contig93850.16820.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93850.16820.1
Unique NamemRNA_H-elongata_contig93850.16820.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig93850.16820.1 vs. uniprot
Match: A0A6H5KV09_9PHAE (GH16 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV09_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 2.100e-37
Identity = 70/115 (60.87%), Postives = 88/115 (76.52%), Query Frame = 3 
Query:    3 GE*LAFTSRAEQGGYWDVGASIASGEENTTMVFHILVNATNCSLPETDGFDGLGSQGVDLLGGPLSLAETGSWKAFVLPLKEDVWVSEGDYRVLFCADTGMFNLNYQRFFTPNPT 347
            GE +AFT+RA++  +WDVGAS+ASG + TT+ F ILVNATNCS   TDG +GLG  GVDLL GPL    TGSW+AF +  KE+V+V EG +RVLFCAD G+FN+N+ R +TP PT
Sbjct:  529 GEWVAFTARADEAAFWDVGASVASGLDGTTVQFRILVNATNCSSAATDGLNGLGDTGVDLLNGPLFAGYTGSWEAFEMVYKEEVYVPEGTHRVLFCADDGIFNMNFLRVWTPTPT 643
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93850.16820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KV09_9PHAE2.100e-3760.87GH16 domain-containing protein n=2 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93850contigH-elongata_contig93850:48..931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue1.6e-22
Seed eggNOG ortholog2880.D8LQ34
EggNOG free text desc.Glycosyl hydrolases family 16
EggNOG OGs2S1W9@2759,COG2273@1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size682
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93850.16820.1prot_H-elongata_contig93850.16820.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93850 224..839 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931335.1967707-UTR-H-elongata_contig93850:47..2231622931335.1967707-UTR-H-elongata_contig93850:47..223Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93850 48..223 -
1691679794.5890863-UTR-H-elongata_contig93850:47..2231691679794.5890863-UTR-H-elongata_contig93850:47..223Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93850 48..223 -
1622931335.2545695-UTR-H-elongata_contig93850:839..9311622931335.2545695-UTR-H-elongata_contig93850:839..931Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93850 840..931 -
1691679794.6191514-UTR-H-elongata_contig93850:839..9311691679794.6191514-UTR-H-elongata_contig93850:839..931Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93850 840..931 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931335.2166042-CDS-H-elongata_contig93850:223..3491622931335.2166042-CDS-H-elongata_contig93850:223..349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93850 224..349 -
1691679794.6029763-CDS-H-elongata_contig93850:223..3491691679794.6029763-CDS-H-elongata_contig93850:223..349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93850 224..349 -
1622931335.2331135-CDS-H-elongata_contig93850:551..8391622931335.2331135-CDS-H-elongata_contig93850:551..839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93850 552..839 -
1691679794.6113477-CDS-H-elongata_contig93850:551..8391691679794.6113477-CDS-H-elongata_contig93850:551..839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93850 552..839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93850.16820.1

>prot_H-elongata_contig93850.16820.1 ID=prot_H-elongata_contig93850.16820.1|Name=mRNA_H-elongata_contig93850.16820.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp
MVFHILVNATNCSLPETDGFDGLGSQGVDLLGGPLSLAETGSWKAFVLPL
KEDVWVSEGDYRVLFCADTGMFNLNYQRFFTPNPTPAPAMAWIYMALELF
VSPVGSNLGIGSLDVATAIASKALRACADEDVLEAGS*
back to top

mRNA from alignment at H-elongata_contig93850:48..931-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93850.16820.1 ID=mRNA_H-elongata_contig93850.16820.1|Name=mRNA_H-elongata_contig93850.16820.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=884bp|location=Sequence derived from alignment at H-elongata_contig93850:48..931- (Himanthalia elongata Himel1 dioecious)
AGGGCGAGTGACTTGCCTTCACGTCTAGGGCAGAGCAGGGTGGCTACTGG
GACGTGGGAGCGTCCATCGCTTCGGGTGAGGAAAACACCACGATGGTGTT
CCACATTCTCGTGAACGCGACCAACTGCTCTCTGCCCGAAACGGACGGGT
TTGACGGCCTCGGCAGCCAAGGGGTCGATCTCTTGGGCGGGCCTCTATCC
CTCGCCGAGACGGGATCTTGGAAGGCCTTCGTACTGCCCTTGAAGGAGGA
CGTCTGGGTGTCGGAGGGTGACTATCGCGTGCTGTTCTGCGCGGACACCG
GAATGTTTAACCTCAACTACCAAAGGTTTTTCACGCCCAACCCAACACCC
GCGCCGGCCATGGCGTGGATATACATGGCGGTGGGTGGGATGTTTGTGTT
TCTCTCTGAAATAAGATTTTGGTGCTAGTTTAGCACACTATTTTCAATAC
GTTATCGGAGGGCTGATCGATTCTAATCGACAAGACTGCTCGGGCGCGAG
CGAGGCTCGCCCCCGTCCTTCGGTAATCGACACCAGATTCTGCTCGCCCC
CCCCGGTGCAACGCTTTCTGACCGCCTCACAGCTCGAACTTTTCGTGAGC
CCCGTCGGAAGCAACCTGGGAATTGGCTCGCTGGATGTGGCGACCGCGAT
CGCGAGCAAGGCACTCCGGGCCTGCGCTGACGAGGATGTGCTGGAGGCCG
GGTCATAATGGGATCGATCGTTCCTCATGTCGCCCGTTCGAAAACCCACC
GCGTCGAACATGCTGGCGTCCATTGCAACTCCGACGGGATTAAAGCGGGA
TCAGTTCGAGGAAGCCCTCGTCCGGGCGCTGGACAGGCAGCTGGGGGGTT
CAAGGCTTCGGCGTGTCACCATGACCTCTGTTTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig93850:48..931-

>mRNA_H-elongata_contig93850.16820.1 ID=mRNA_H-elongata_contig93850.16820.1|Name=mRNA_H-elongata_contig93850.16820.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig93850:48..931- (Himanthalia elongata Himel1 dioecious)
ATGGTGTTCCACATTCTCGTGAACGCGACCAACTGCTCTCTGCCCGAAAC
GGACGGGTTTGACGGCCTCGGCAGCCAAGGGGTCGATCTCTTGGGCGGGC
CTCTATCCCTCGCCGAGACGGGATCTTGGAAGGCCTTCGTACTGCCCTTG
AAGGAGGACGTCTGGGTGTCGGAGGGTGACTATCGCGTGCTGTTCTGCGC
GGACACCGGAATGTTTAACCTCAACTACCAAAGGTTTTTCACGCCCAACC
CAACACCCGCGCCGGCCATGGCGTGGATATACATGGCGATGGTGTTCCAC
ATTCTCGTGAACGCGACCAACTGCTCTCTGCCCGAAACGGACGGGTTTGA
CGGCCTCGGCAGCCAAGGGGTCGATCTCTTGGGCGGGCCTCTATCCCTCG
CCGAGACGGGATCTTGGAAGGCCTTCGTACTGCCCTTGAAGGAGGACGTC
TGGGTGTCGGAGGGTGACTATCGCGTGCTGTTCTGCGCGGACACCGGAAT
GTTTAACCTCAACTACCAAAGGTTTTTCACGCCCAACCCAACACCCGCGC
CGGCCATGGCGTGGATATACATGGCGCTCGAACTTTTCGTGAGCCCCGTC
GGAAGCAACCTGGGAATTGGCTCGCTGGATGTGGCGACCGCGATCGCGAG
CAAGGCACTCCGGGCCTGCGCTGACGAGGATGTGCTGGAGGCCGGGTCAT
AACTCGAACTTTTCGTGAGCCCCGTCGGAAGCAACCTGGGAATTGGCTCG
CTGGATGTGGCGACCGCGATCGCGAGCAAGGCACTCCGGGCCTGCGCTGA
CGAGGATGTGCTGGAGGCCGGGTCATAA
back to top