prot_H-elongata_contig9380.16817.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig9380.16817.1
Unique Nameprot_H-elongata_contig9380.16817.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length164
Homology
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BLAST of mRNA_H-elongata_contig9380.16817.1 vs. uniprot
Match: D8LKM9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKM9_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 3.170e-53
Identity = 100/161 (62.11%), Postives = 126/161 (78.26%), Query Frame = 0 
Query:   10 LVAVAAPSDTYLATGLFSIAAAVLVVGAGLLVASTVSGKDGLGAFLSKEKANNPFYQNTMSKIAPRTPDVLNKIRFPDLDFVEVYNQPPRAEEFLA-------DGTDN---PDASAVVATAESLRQRLLEAVQAKDYNLASSLERELASFLRQNKINFEDD 160
            L+A AAP +   A+GLF IAA V+ +GAG+LVASTV+GK+GLGAFL++EK +NPFYQ+TM+K  P+TPD+LNKIR PDLDFV+VYNQPP  ++++        D   N   PDA  V ATAE+LRQ+LL AVQAKDY+LASSLERELA+FLR+N + FE D
Sbjct:  102 LLASAAPGNPSTASGLFGIAALVIALGAGVLVASTVTGKNGLGAFLTQEKGSNPFYQDTMAKFTPKTPDILNKIRLPDLDFVDVYNQPPAPDDYVDLEQDVTFDAMANKGAPDADTV-ATAEALRQKLLMAVQAKDYDLASSLERELATFLRKNGMGFEGD 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9380.16817.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKM9_ECTSI3.170e-5362.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..42
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 43..163
NoneNo IPR availableTMHMMTMhelixcoord: 20..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9380contigH-elongata_contig9380:2750..5734 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9380.16817.1mRNA_H-elongata_contig9380.16817.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig9380 1643..6710 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig9380.16817.1 ID=prot_H-elongata_contig9380.16817.1|Name=mRNA_H-elongata_contig9380.16817.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
MEVPGATIELVAVAAPSDTYLATGLFSIAAAVLVVGAGLLVASTVSGKDG
LGAFLSKEKANNPFYQNTMSKIAPRTPDVLNKIRFPDLDFVEVYNQPPRA
EEFLADGTDNPDASAVVATAESLRQRLLEAVQAKDYNLASSLERELASFL
RQNKINFEDDAAK*
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