mRNA_H-elongata_contig93762.16810.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93762.16810.1
Unique NamemRNA_H-elongata_contig93762.16810.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig93762.16810.1 vs. uniprot
Match: D7FXS1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXS1_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 2.610e-48
Identity = 83/94 (88.30%), Postives = 89/94 (94.68%), Query Frame = 1 
Query:    1 DVDLAIILGLCLDVSNSNPRDGLTNEEMTPYIARVLRQPGCNWMIYSTALLQRAWVEFERSHSRDRAALQLQALLDQHTTRLTYTQSTAKVIRE 282
            DVDLAIILGLCLDVSNSNPRDGLTNE+MTPYIARVLRQPGCNWMIYSTALLQRAWVEFERSH+RDRAALQLQALLDQHTT+LTY QS   ++ +
Sbjct:  706 DVDLAIILGLCLDVSNSNPRDGLTNEQMTPYIARVLRQPGCNWMIYSTALLQRAWVEFERSHARDRAALQLQALLDQHTTKLTYMQSAQSIVED 799
[Close]
BLAST of mRNA_H-elongata_contig93762.16810.1 vs. uniprot
Match: A0A835YIY8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIY8_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.360e-36
Identity = 67/93 (72.04%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:    4 VDLAIILGLCLDVSNSNPRDGLTNEEMTPYIARVLRQPGCNWMIYSTALLQRAWVEFERSHSRDRAALQLQALLDQHTTRLTYTQSTAKVIRE 282
            +DL  +L LCLDV+NSNPRDGLTNE+M+PYI RVLR P  NWMIYSTALLQRAW+EFER H  +R+ALQLQALLDQHTTRLT TQ++ + + E
Sbjct:   20 IDLCTVLALCLDVANSNPRDGLTNEQMSPYIDRVLRTPS-NWMIYSTALLQRAWIEFERPHLAERSALQLQALLDQHTTRLTITQASVQSVEE 111
[Close]
BLAST of mRNA_H-elongata_contig93762.16810.1 vs. uniprot
Match: A0A7S4DII8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DII8_HETAK)

HSP 1 Score: 124 bits (310), Expect = 3.160e-33
Identity = 60/93 (64.52%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:    4 VDLAIILGLCLDVSNSNPRDGLTNEEMTPYIARVLRQPGCNWMIYSTALLQRAWVEFERSHSRDRAALQLQALLDQHTTRLTYTQSTAKVIRE 282
            VD AI+L LCLDV NSNP+ GLT E+M PY+ RVL+ P  NWMIYST LL+RAW+E ER+H+R+RA LQLQAL+DQH+ RL  TQST + + E
Sbjct:   38 VDQAILLALCLDVQNSNPKCGLTREQMQPYLDRVLKNPN-NWMIYSTGLLERAWLECERTHARERAVLQLQALVDQHSNRLALTQSTTRSVEE 129
[Close]
BLAST of mRNA_H-elongata_contig93762.16810.1 vs. uniprot
Match: A0A7S3LAJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LAJ5_9STRA)

HSP 1 Score: 118 bits (295), Expect = 6.000e-32
Identity = 59/93 (63.44%), Postives = 73/93 (78.49%), Query Frame = 1 
Query:    4 VDLAIILGLCLDVSNSNPRDGLTNEEMTPYIARVLRQPGCNWMIYSTALLQRAWVEFERSHSRDRAALQLQALLDQHTTRLTYTQSTAKVIRE 282
            +D +I+L LCLDV NSNP DGLT EEM  ++ARVL     +WMIYST LL+R+W+EFER+H+R+RA LQ+QAL DQHT RLT TQST + I E
Sbjct:   23 LDQSIVLALCLDVKNSNPTDGLTAEEMGAFLARVLDHHD-DWMIYSTGLLERSWLEFERTHARERAILQMQALTDQHTNRLTITQSTTQSIEE 114
[Close]
BLAST of mRNA_H-elongata_contig93762.16810.1 vs. uniprot
Match: B7G1Y8_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G1Y8_PHATC)

HSP 1 Score: 122 bits (307), Expect = 1.570e-31
Identity = 60/93 (64.52%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:    4 VDLAIILGLCLDVSNSNPRDGLTNEEMTPYIARVLRQPGCNWMIYSTALLQRAWVEFERSHSRDRAALQLQALLDQHTTRLTYTQSTAKVIRE 282
            +D AI++ LCLDV NSNP DGLT EEM  ++ARVL     +WM+YSTALL+R+W+EFERSH+R+RA LQ+QAL DQHT RLT TQST K + E
Sbjct:   12 LDQAILMALCLDVKNSNPIDGLTGEEMAAFLARVLEHHD-DWMVYSTALLERSWLEFERSHARERAILQMQALADQHTNRLTITQSTKKSVEE 103
[Close]
BLAST of mRNA_H-elongata_contig93762.16810.1 vs. uniprot
Match: A0A3R7G2C5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G2C5_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.640e-30
Identity = 61/93 (65.59%), Postives = 72/93 (77.42%), Query Frame = 1 
Query:    4 VDLAIILGLCLDVSNSNPRDGLTNEEMTPYIARVLRQPGCNWMIYSTALLQRAWVEFERSHSRDRAALQLQALLDQHTTRLTYTQSTAKVIRE 282
            VD  ++LGLCLDV NSN  DGLT EEM PY+ARVL  P  NWM+YSTALL+RAW+E E S  R+RA LQ+QAL+DQHTTRLT TQ+T   I +
Sbjct:  455 VDQIVLLGLCLDVKNSNADDGLTREEMMPYVARVLENPN-NWMVYSTALLERAWIECESSKRRERAVLQMQALVDQHTTRLTITQNTLASIAD 546
[Close]
BLAST of mRNA_H-elongata_contig93762.16810.1 vs. uniprot
Match: A0A3F2RZH8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RZH8_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.660e-30
Identity = 61/93 (65.59%), Postives = 72/93 (77.42%), Query Frame = 1 
Query:    4 VDLAIILGLCLDVSNSNPRDGLTNEEMTPYIARVLRQPGCNWMIYSTALLQRAWVEFERSHSRDRAALQLQALLDQHTTRLTYTQSTAKVIRE 282
            VD  ++LGLCLDV NSN  DGLT EEM PY+ARVL  P  NWM+YSTALL+RAW+E E S  R+RA LQ+QAL+DQHTTRLT TQ+T   I +
Sbjct:  495 VDQIVLLGLCLDVKNSNADDGLTREEMMPYVARVLENPN-NWMVYSTALLERAWIECESSKRRERAVLQMQALVDQHTTRLTITQNTLASIAD 586
[Close]
BLAST of mRNA_H-elongata_contig93762.16810.1 vs. uniprot
Match: M4B454_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B454_HYAAE)

HSP 1 Score: 122 bits (307), Expect = 2.240e-30
Identity = 61/93 (65.59%), Postives = 72/93 (77.42%), Query Frame = 1 
Query:    4 VDLAIILGLCLDVSNSNPRDGLTNEEMTPYIARVLRQPGCNWMIYSTALLQRAWVEFERSHSRDRAALQLQALLDQHTTRLTYTQSTAKVIRE 282
            VD  ++LGLCLDV NSN  DGLT EEM PYI RVL  P  NWM+YSTALL+RAW+E E S  R+RA LQ+QAL+DQHTTRLT TQ+T + I +
Sbjct:  489 VDQIVLLGLCLDVKNSNANDGLTREEMIPYITRVLENPN-NWMVYSTALLERAWLECESSKRRERAVLQMQALVDQHTTRLTITQNTLQSIAD 580
[Close]
BLAST of mRNA_H-elongata_contig93762.16810.1 vs. uniprot
Match: A0A2P4XRT2_9STRA (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRT2_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.840e-30
Identity = 60/93 (64.52%), Postives = 72/93 (77.42%), Query Frame = 1 
Query:    4 VDLAIILGLCLDVSNSNPRDGLTNEEMTPYIARVLRQPGCNWMIYSTALLQRAWVEFERSHSRDRAALQLQALLDQHTTRLTYTQSTAKVIRE 282
            VD  ++LGLCLDV NSN  DGLT EEM PY+ RVL  P  NWM+YSTALL+RAW+E E S  R+RA LQ+QAL+DQHTTRLT TQ+T + I +
Sbjct:  490 VDQIVLLGLCLDVKNSNANDGLTREEMMPYVTRVLENPN-NWMVYSTALLERAWLECESSKRRERAVLQMQALVDQHTTRLTITQNTLESIAD 581
[Close]
BLAST of mRNA_H-elongata_contig93762.16810.1 vs. uniprot
Match: W4GVW3_9STRA (Uncharacterized protein (Fragment) n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GVW3_9STRA)

HSP 1 Score: 122 bits (306), Expect = 3.050e-30
Identity = 58/93 (62.37%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:    4 VDLAIILGLCLDVSNSNPRDGLTNEEMTPYIARVLRQPGCNWMIYSTALLQRAWVEFERSHSRDRAALQLQALLDQHTTRLTYTQSTAKVIRE 282
            +D AI+L LCLDV N+NP DGLT+E+M PY+ RVL  P  NWM+YST LL+RAW+E E   SR+RA LQ+QAL+DQHTTRLT TQ++ K I++
Sbjct:  468 IDQAILLSLCLDVKNNNPADGLTSEQMMPYLTRVLANPN-NWMVYSTGLLERAWLECETQRSRERAILQMQALVDQHTTRLTITQTSLKAIQD 559
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93762.16810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXS1_ECTSI2.610e-4888.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YIY8_9STRA1.360e-3672.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4DII8_HETAK3.160e-3364.52Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3LAJ5_9STRA6.000e-3263.44Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
B7G1Y8_PHATC1.570e-3164.52Predicted protein (Fragment) n=2 Tax=Phaeodactylum... [more]
A0A3R7G2C5_9STRA1.640e-3065.59Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A3F2RZH8_9STRA1.660e-3065.59Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
M4B454_HYAAE2.240e-3065.59Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A2P4XRT2_9STRA2.840e-3064.52Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
W4GVW3_9STRA3.050e-3062.37Uncharacterized protein (Fragment) n=10 Tax=Aphano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93762contigH-elongata_contig93762:596..2135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.2
Seed ortholog evalue3.9e-42
Seed eggNOG ortholog2880.D7FXS1
Preferred nameTTC27
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0008150,GO:0009987,GO:0016043,GO:0031505,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045229,GO:0071554,GO:0071555,GO:0071840,GO:0071852
EggNOG free text desc.fungal-type cell wall organization
EggNOG OGsKOG1128@1,KOG1128@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931333.876276-CDS-H-elongata_contig93762:595..7661622931333.876276-CDS-H-elongata_contig93762:595..766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93762 596..766 -
1691679794.111676-CDS-H-elongata_contig93762:595..7661691679794.111676-CDS-H-elongata_contig93762:595..766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93762 596..766 -
1622931333.8891623-CDS-H-elongata_contig93762:2003..21351622931333.8891623-CDS-H-elongata_contig93762:2003..2135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93762 2004..2135 -
1691679794.127543-CDS-H-elongata_contig93762:2003..21351691679794.127543-CDS-H-elongata_contig93762:2003..2135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93762 2004..2135 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93762.16810.1prot_H-elongata_contig93762.16810.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93762 596..2135 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93762.16810.1

>prot_H-elongata_contig93762.16810.1 ID=prot_H-elongata_contig93762.16810.1|Name=mRNA_H-elongata_contig93762.16810.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
DVDLAIILGLCLDVSNSNPRDGLTNEEMTPYIARVLRQPGCNWMIYSTAL
LQRAWVEFERSHSRDRAALQLQALLDQHTTRLTYTQSTAKVIRETLLYWF
*
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mRNA from alignment at H-elongata_contig93762:596..2135-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93762.16810.1 ID=mRNA_H-elongata_contig93762.16810.1|Name=mRNA_H-elongata_contig93762.16810.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1540bp|location=Sequence derived from alignment at H-elongata_contig93762:596..2135- (Himanthalia elongata Himel1 dioecious)
GACGTCGACCTGGCCATCATACTGGGGCTGTGCCTGGACGTGAGCAATTC
TAACCCTCGCGACGGGCTCACCAACGAGGAGATGACTCCGTATATCGCTC
GAGTGCTCCGCCAGCCGGGCTGTAACTGGATGGTGAGCATGCGGCGACGT
TACTATCTACTCCCTTCATTTTTACGACGCCCGGCTTCCGCATCGTATCG
TATCGTATCGTAGAGTTGTTTTCTTGTATAGTTCATAGTATATTATAATA
AACTGGCTGTAGACGACGCTTCCTCCTTCGGAAAAACAAATGAGCTCAAT
CGAAACCCTCCGAACGTCGACACTATATCCTTTATACTTCATTATGCCAC
AAGTGGAGGGGAGGGACTATGACCAAAAATCGTGAGAATCGAGTGTGTAC
ATTCAATTATTCAGTTTTGGTGGCGTAGCGTCGGTGGTCGATTAGTATAT
CTGTAGTATATAAAGTATAGTAGAGTATCGGGTATTGTATATGGTATTAT
AATATGGTACCAGGTATATTATATGGTATTATACTGTAGTGTAGTAGGTT
ATATATAGTCAAGTAAACTCAGTTTGCGTTATTTGCGGGTACAATGGTTC
GGTGGTCGTTATTTGCCCGATCCCATTACCGATTCGAGAAAGGTTTCCTG
ATCCCTTCTGTGACTGACCGCTTCCATAATTCGGGTACACTATATGATCC
TTTCGGTGATTCGGATACAGTATATTCGATGATTCGGGTGCCCCATATAA
TTTTTCGGTTATTCGGATACGGTCTCTTCGATGATTCGGGTACCCCATCT
TTTTCTTTTTGTGATTCGGGTACTGTCTCTTCAGATGATTTGGGTTGGTG
CACTATCTCATCATTTTGGGTGATTCGGATACAGTCTCTTCGATGATTCG
GGTACCCCAATCTGGTCTTTTTTTGTGATTCAGGTACTGTCTCTTCAGAT
GATTTGGGTAGGTACACTATCTGGTCCTTTTGGGTGATTCCGATACAGTC
TCTTCGATAATTCGGGTACACCATCTGATACTTTCGGTGATTTCGATACA
TTCTCTTCGATGATTTGGGTACACTATCTTATCATTTTTATTATTCGGAT
ACAATCTCTTCAATGATTCGGGTGTACAGTACTTTCGATCAATCAAGTTA
CATAACCCGGTCTAATAATCCTCTCACGGTGCCCGATCAAATGATTCGGG
TACGGCCACCTCGACGATTCAGACACAGTTCCTTCGATGATTCGGGTACA
GTACCGTTGATAATTCGATATAATATATTTCTTCGATGATTCGGTTACCG
TACACGCCATCCATCCCTGCGTTACCGCAAACATCACGTAGTCTTCTTCC
CCCCCTCCCCCTCCTCCAGATTTACAGCACGGCTCTGCTGCAGAGGGCGT
GGGTCGAGTTTGAGCGATCGCATTCGAGAGATCGAGCAGCACTGCAGCTG
CAGGCCCTCCTCGACCAGCACACGACGAGGCTCACCTACACCCAGTCTAC
TGCTAAGGTTATCCGCGAAACGTTACTGTACTGGTTTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig93762:596..2135-

>mRNA_H-elongata_contig93762.16810.1 ID=mRNA_H-elongata_contig93762.16810.1|Name=mRNA_H-elongata_contig93762.16810.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig93762:596..2135- (Himanthalia elongata Himel1 dioecious)
GACGTCGACCTGGCCATCATACTGGGGCTGTGCCTGGACGTGAGCAATTC
TAACCCTCGCGACGGGCTCACCAACGAGGAGATGACTCCGTATATCGCTC
GAGTGCTCCGCCAGCCGGGCTGTAACTGGATGGACGTCGACCTGGCCATC
ATACTGGGGCTGTGCCTGGACGTGAGCAATTCTAACCCTCGCGACGGGCT
CACCAACGAGGAGATGACTCCGTATATCGCTCGAGTGCTCCGCCAGCCGG
GCTGTAACTGGATGATTTACAGCACGGCTCTGCTGCAGAGGGCGTGGGTC
GAGTTTGAGCGATCGCATTCGAGAGATCGAGCAGCACTGCAGCTGCAGGC
CCTCCTCGACCAGCACACGACGAGGCTCACCTACACCCAGTCTACTGCTA
AGGTTATCCGCGAAACGTTACTGTACTGGTTTTAGATTTACAGCACGGCT
CTGCTGCAGAGGGCGTGGGTCGAGTTTGAGCGATCGCATTCGAGAGATCG
AGCAGCACTGCAGCTGCAGGCCCTCCTCGACCAGCACACGACGAGGCTCA
CCTACACCCAGTCTACTGCTAAGGTTATCCGCGAAACGTTACTGTACTGG
TTTTAG
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