mRNA_H-elongata_contig93703.16804.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93703.16804.1
Unique NamemRNA_H-elongata_contig93703.16804.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot
Match: D7FIM1_ECTSI (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIM1_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 4.430e-78
Identity = 136/197 (69.04%), Postives = 146/197 (74.11%), Query Frame = 1 
Query:   46 CQECEEHTLNELDSVLTCLECGYTGCVSPPNRHLLRHCLTQPGGSHCFAVSRARAEIFCVHCCDYVYDVEFDAAVSRADDDFELPDFRDSVFG----------GDERVRGRRRRRAGRDGHYVLTDRFGQQPGRERSWPPPVLLSPARGRLVAAGVRGMFNLGNTCFMTSVLQAVLHISVMQSFFSGKGHEPAKCER 606
            C EC+EHTL+E D VLTCLECGYT C SPP RH+LRHCLTQPG  HCFA SR RAEIFC  CCDYVYDVEFD AVSR DD F L    D+  G          GD  VRGRRRRRA  DG Y +          ER+ PPPVLLSPAR RLVAAGVRGMFNLGNTCFM+SVLQAVLHISVMQSFFS KGHEP++CE+
Sbjct:   13 CHECDEHTLHEPDDVLTCLECGYTACGSPPRRHMLRHCLTQPGDGHCFAASRERAEIFCARCCDYVYDVEFDTAVSRVDDSFGLHTEWDNGGGWGAGGGSARDGDACVRGRRRRRARGDGFYRV----------ERASPPPVLLSPARSRLVAAGVRGMFNLGNTCFMSSVLQAVLHISVMQSFFSEKGHEPSRCEK 199
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BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot
Match: A0A804M9E5_MAIZE (Ubiquitinyl hydrolase 1 n=2 Tax=Zea mays TaxID=4577 RepID=A0A804M9E5_MAIZE)

HSP 1 Score: 86.3 bits (212), Expect = 3.020e-16
Identity = 66/198 (33.33%), Postives = 83/198 (41.92%), Query Frame = 1 
Query:   40 PKCQECEEHTLNELDSVLTCLECGYTGCVSPPNRHLLRHCLTQPGGSHCFAVSRARAEIFCVHCCDYVYDVEFDAAVSRADDDFELPDFRDSVFGGDERVRGRRRRRAGRDGHYVLTDRFGQQPGRERSWPPP----VLLSPARGRLVA-----AGVRGMFNLGNTCFMTSVLQAVLHISVMQSFFSGKGHEPAKCER 606
            P+C  C   + +    +  CL C    C S    H   H     G  H  AV   RAE+FC  C D VYD +FD AV  A     LP               R+RRR      Y             R+W P      L++ A     A     AG+RG+ NLGNTCFM SVLQA+LH   ++++F G  H    C R
Sbjct:   48 PRCSPCSAASPSPTSRLYACLSCAAVFCPS----HAATHASASAGPGHQIAVDVDRAELFCAACGDQVYDPDFDHAVFLAQSSSLLPSTSXXXXXXXXXPALRKRRRV----DY-------------RAWAPDPAEFALMTSADPTTSASASAPAGLRGLNNLGNTCFMNSVLQALLHAPPLRNYFLGDRHNRFLCPR 224
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BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot
Match: A0A1D6DW87_MAIZE (Ubiquitinyl hydrolase 1 n=12 Tax=Panicoideae TaxID=147369 RepID=A0A1D6DW87_MAIZE)

HSP 1 Score: 86.3 bits (212), Expect = 3.800e-16
Identity = 66/198 (33.33%), Postives = 83/198 (41.92%), Query Frame = 1 
Query:   40 PKCQECEEHTLNELDSVLTCLECGYTGCVSPPNRHLLRHCLTQPGGSHCFAVSRARAEIFCVHCCDYVYDVEFDAAVSRADDDFELPDFRDSVFGGDERVRGRRRRRAGRDGHYVLTDRFGQQPGRERSWPPP----VLLSPARGRLVA-----AGVRGMFNLGNTCFMTSVLQAVLHISVMQSFFSGKGHEPAKCER 606
            P+C  C   + +    +  CL C    C S    H   H     G  H  AV   RAE+FC  C D VYD +FD AV  A     LP               R+RRR      Y             R+W P      L++ A     A     AG+RG+ NLGNTCFM SVLQA+LH   ++++F G  H    C R
Sbjct:   48 PRCSPCSAASPSPTSRLYACLSCAAVFCPS----HAATHASASAGPGHQIAVDVDRAELFCAACGDQVYDPDFDHAVFLAQSSSLLPSTSXXXXXXXXXPALRKRRRV----DY-------------RAWAPDPAEFALMTSADPTTSASASAPAGLRGLNNLGNTCFMNSVLQALLHAPPLRNYFLGDRHNRFLCPR 224
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BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot
Match: I1J2K3_BRADI (Ubiquitinyl hydrolase 1 n=4 Tax=Pooideae TaxID=147368 RepID=I1J2K3_BRADI)

HSP 1 Score: 85.9 bits (211), Expect = 5.170e-16
Identity = 66/193 (34.20%), Postives = 79/193 (40.93%), Query Frame = 1 
Query:   40 PKCQECEEHTLNELDS--VLTCLECGYTGCVSPPNRHLLRHCLTQPGGSHCFAVSRARAEIFCVHCCDYVYDVEFDAAVSRADDDFELPDFRDSVFGGDERVRGRRRRRAGRDGHYVLTDRFGQQPGRERSWPPPVLLSPARGRLVAA--GVRGMFNLGNTCFMTSVLQAVLHISVMQSFFSGKGHEPAKCER 606
            P+C  C   T        +  CL C    C S    H   H  T P   H  AV   RAE+FC  C D VYD +FD AV  A      P    S      R R R   RA           +   P            + AR    AA  G+RG+ NLGNTCFM SVLQA+LH   ++++F G  H    C R
Sbjct:   48 PRCSPCASSTSPSPSPPRLYACLSCAAVFCAS----HAASHAATPPSPGHQIAVDVDRAELFCAACGDQVYDSDFDHAVVLAQSSTLCPASTSSASAPSPRKRRRVDYRA-----------WAPDPAESALMSSADPATSARAAAAAAPPGLRGLNNLGNTCFMNSVLQALLHAPPLRNYFLGDRHNRFLCPR 225
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BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot
Match: A0A5B7CAR0_DAVIN (Ubiquitinyl hydrolase 1 n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7CAR0_DAVIN)

HSP 1 Score: 85.1 bits (209), Expect = 9.520e-16
Identity = 67/193 (34.72%), Postives = 91/193 (47.15%), Query Frame = 1 
Query:   40 PKCQECEEHTLNELDSVLTCLECGYTGCVSPPN-RHLLRHCLTQPGGSHCFAVSRARAEIFCVHCCDYVYDVEFDAAVSRADDDFELPDFRDSVFGGDE-RVRGRRRRRAGRDGHYVLTDRFGQQ--PGRERSWPPPVLLSPARGRLVAAGVRGMFNLGNTCFMTSVLQAVLHISVMQSFFSGKGHEPAKCER 606
            P+C  C  +       +  CL C    C S P+  H L H  TQ    H  AV   RAE++C  C D VYD +FD AV  +     LP   + V GG E R+  R+R   G D    L  ++G++   GR+RS                 G+RG+ NLGNTCFM SVLQ +LH   ++++F    H    C +
Sbjct:   54 PRCNFCSGYQ----GRLYICLICSSVSCCSSPDSNHALLH--TQSQNDHEIAVDIERAELYCTVCSDQVYDPDFDKAV-MSKHIMGLPKTENGVVGGGELRLSKRKRLGFGVD----LDSKYGKRLVSGRDRS----------SKSCFPLGLRGLNNLGNTCFMNSVLQVLLHAPPLRNYFLSDRHNHETCRK 225
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BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot
Match: A0A1Y1I2S8_KLENI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I2S8_KLENI)

HSP 1 Score: 84.3 bits (207), Expect = 1.880e-15
Identity = 61/196 (31.12%), Postives = 86/196 (43.88%), Query Frame = 1 
Query:   49 QECEEH-TLNELDSVLTCLECGYTGCVSPPNRHLLRHCLTQPGGSHCFAVSRARAEIFCVHCCDYVYDVEFDAAVSRADDDFELPDFRDSVFGGDERVRGRRRRRAGR----DGHYVLTDRFGQQPGRERSWPPPVL-----LSPARGRLVAAGVRGMFNLGNTCFMTSVLQAVLHISVMQSFFSGKGHEPAKCER 606
            Q CE       L  + +CL CG  GC  P  +H   H L   GG H  AV   R  +FC  C D VYD EFDA V                   D   R +     GR      ++    +  ++  +++ W    +     ++P       AG+RG+ NLGNTCFM SVLQA+LH   ++++F    H  A C++
Sbjct:   52 QRCEHPGCCTGLGRLYSCLACGGVGCWGPKEQHAREHALQ--GGGHEIAVDVQRKVLFCGACGDVVYDPEFDAVVREG-------------LAADVSYREKLESNQGRYDLPAANFPRPIKRRKKMAKQKDWDGGAIAGERPITPELRNGFPAGLRGLNNLGNTCFMNSVLQALLHTPPLRNYFLNDRHNRAVCQK 232
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BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot
Match: A0A835D6W4_9MAGN (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835D6W4_9MAGN)

HSP 1 Score: 84.0 bits (206), Expect = 2.380e-15
Identity = 64/190 (33.68%), Postives = 89/190 (46.84%), Query Frame = 1 
Query:   40 PKCQECEEHTLNELDSVLTCLECGYTGCV-SPPNRHLLRHCLTQPGGSHCFAVSRARAEIFCVHCCDYVYDVEFDAAVSRADDDFELPDFRDSVFGGDERVRGRRRRRAGRDGHYVLTDRFGQQPGRERSWPPPVLLSPARGRLVAAGVRGMFNLGNTCFMTSVLQAVLHISVMQSFFSGKGHEPAKCER 606
            P+C  C  +       +  CL C    C  SP + H L H  T+ G  H  AV   RAE+FC  CCD VYD +FD AV  +    E+P   + V    E+   RR+  +  +    L  R G+  G +  +P               G+RG+ NLGNTCFM SVLQA+LH   ++++F    H    C +
Sbjct:   54 PRCNFCSGYQ----GRLYFCLICSSVSCCCSPDSNHALLHSQTENG--HEIAVDMERAELFCCVCCDQVYDPDFDEAV-MSKQIMEMPRNNNGVDVRKEKSNKRRKLISDSNNSKELFLRMGR--GSKSCFP--------------WGLRGLNNLGNTCFMNSVLQALLHAPPLRNYFLSNQHNREICRK 220
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BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot
Match: A0A2G9H309_9LAMI (Ubiquitinyl hydrolase 1 n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9H309_9LAMI)

HSP 1 Score: 84.0 bits (206), Expect = 2.390e-15
Identity = 65/190 (34.21%), Postives = 88/190 (46.32%), Query Frame = 1 
Query:   40 PKCQECEEHTLNELDSVLTCLECG-YTGCVSPPNRHLLRHCLTQPGGSHCFAVSRARAEIFCVHCCDYVYDVEFDAAVSRADDDFELPDFRDSVFGGDE-RVRGRRRRRAGRDGHYVLTDRFGQQPGRERSWPPPVLLSPARGRL-VAAGVRGMFNLGNTCFMTSVLQAVLHISVMQSFFSGKGHEPAKC 600
            P+C  C  +          CL C   T C++P + H L H  ++  G H  AV   RAE++C  CCD VYD EFD AV        LP   + + GG + R+  R+R   G D       R              VL    R +  +  G+RG+ NLGNTCFM SVLQA+LH   ++++F    H    C
Sbjct:   54 PRCSFCSGY----YGRFFMCLICSSVTCCITPESNHTLLH--SESVGGHQIAVDMERAELYCCVCCDQVYDPEFDKAV-MGKHLMVLPRSGNGLVGGGQMRLSKRKRLDFGCDLDSKSVKRM-------------VLRRKQRSKSSLPVGLRGLNNLGNTCFMNSVLQALLHAPPLRNYFLNDMHNHESC 223
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BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot
Match: UPI0019D54133 (ubiquitin C-terminal hydrolase 22-like isoform X2 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D54133)

HSP 1 Score: 82.4 bits (202), Expect = 3.890e-15
Identity = 61/189 (32.28%), Postives = 76/189 (40.21%), Query Frame = 1 
Query:   40 PKCQECEEHTLNELDSVLTCLECGYTGCVSPPNRHLLRHCLTQPGGSHCFAVSRARAEIFCVHCCDYVYDVEFDAAVSRADDDFELPDFRDSVFGGDERVRGRRRRRAGRDGHYVLTDRFGQQPGRERSWPPPVLLSPARGRLVAAGVRGMFNLGNTCFMTSVLQAVLHISVMQSFFSGKGHEPAKCER 606
            P+C  C   + ++   +  CL C    C S    H   H     G  H  AV   RAE+FC  C D VYD +FD AV  A     LP    +          R   RA               P    S   P            AG+RG+ NLGNTCFM SVLQA+LH   ++++F G  H    C R
Sbjct:   48 PRCSPCAAASPSQSPRLYACLSCAAVFCPS----HAASHASASAGPGHQIAVDVDRAELFCAACGDQVYDPDFDHAVFLAQSSSLLPSTSSTXXXXXXXXXRRVDYRAWAPDPAEFALMSSADPTTSASAAAP------------AGLRGLNNLGNTCFMNSVLQALLHAPPLRNYFLGDRHNRFLCPR 220
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BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot
Match: A0A1U8K0W4_GOSHI (Ubiquitin carboxyl-terminal hydrolase n=37 Tax=Gossypium TaxID=3633 RepID=A0A1U8K0W4_GOSHI)

HSP 1 Score: 83.2 bits (204), Expect = 4.500e-15
Identity = 77/219 (35.16%), Postives = 104/219 (47.49%), Query Frame = 1 
Query:    1 PGQQTNTIRVPGK-PKCQECEEHTLNELDSVLTCLECGYTGCVSPP-NRHLLRHCLTQPGGSHCFAVSRARAEIFCVHCCDYVYDVEFDAAVSRAD--------DDFELPDFRDSVFGGD-ERVRGRRRRRAGRDGHYVLTDR-FGQQPGRERSWPPPVLLSPARGRLVAA-----GVRGMFNLGNTCFMTSVLQAVLHISVMQSFFSGKGHEPAKCER 606
            PG +    R P + P+C  CEE + + L     C+ C    C +P  + H   H L+ PG  H  AV   RAE+FC  C D VYD +FDAAV  A                 + SV G   E +R RRR      G Y   +   G+   R     P  LL  A   LV++     G+RG+ NLGNTCFM S+LQA+LH   ++++F G  H    C++
Sbjct:   41 PGGRAAIRREPTEVPRCGTCEESSRSRL---YACVACAAVFCHAPLLHSHASDHSLSIPG--HEIAVDVDRAELFCCACGDQVYDRDFDAAVVLAQTVNATATTSTSGSTAMQCSVAGSQPENLRKRRR------GDYRPWEPDSGEHISRGNQSIP--LLDAANASLVSSTQQPWGLRGLNNLGNTCFMNSILQALLHTPPLRNYFLGDRHNRYYCQQ 246
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93703.16804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIM1_ECTSI4.430e-7869.04Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2... [more]
A0A804M9E5_MAIZE3.020e-1633.33Ubiquitinyl hydrolase 1 n=2 Tax=Zea mays TaxID=457... [more]
A0A1D6DW87_MAIZE3.800e-1633.33Ubiquitinyl hydrolase 1 n=12 Tax=Panicoideae TaxID... [more]
I1J2K3_BRADI5.170e-1634.20Ubiquitinyl hydrolase 1 n=4 Tax=Pooideae TaxID=147... [more]
A0A5B7CAR0_DAVIN9.520e-1634.72Ubiquitinyl hydrolase 1 n=1 Tax=Davidia involucrat... [more]
A0A1Y1I2S8_KLENI1.880e-1531.12Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Kleb... [more]
A0A835D6W4_9MAGN2.380e-1533.68Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tetr... [more]
A0A2G9H309_9LAMI2.390e-1534.21Ubiquitinyl hydrolase 1 n=1 Tax=Handroanthus impet... [more]
UPI0019D541333.890e-1532.28ubiquitin C-terminal hydrolase 22-like isoform X2 ... [more]
A0A1U8K0W4_GOSHI4.500e-1535.16Ubiquitin carboxyl-terminal hydrolase n=37 Tax=Gos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93703contigH-elongata_contig93703:1134..2000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score263.5
Seed ortholog evalue8.3e-68
Seed eggNOG ortholog2880.D7FIM1
Preferred nameUSP22
KEGG koko:K11366,ko:K11848,ko:K11873
GOsGO:0000018,GO:0000123,GO:0000124,GO:0000902,GO:0000904,GO:0003674,GO:0003682,GO:0003712,GO:0003713,GO:0003824,GO:0004843,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006282,GO:0006325,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006357,GO:0006396,GO:0006464,GO:0006473,GO:0006475,GO:0006479,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006996,GO:0007154,GO:0007275,GO:0007346,GO:0007399,GO:0007409,GO:0007411,GO:0007412,GO:0008150,GO:0008152,GO:0008213,GO:0008233,GO:0008234,GO:0008347,GO:0008380,GO:0009056,GO:0009057,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010001,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010569,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010941,GO:0010942,GO:0016043,GO:0016070,GO:0016458,GO:0016477,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016574,GO:0016578,GO:0016579,GO:0016604,GO:0016607,GO:0016787,GO:0018022,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0019899,GO:0019941,GO:0021782,GO:0022008,GO:0030030,GO:0030154,GO:0030163,GO:0030182,GO:0030374,GO:0031175,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031647,GO:0031974,GO:0031981,GO:0032259,GO:0032446,GO:0032501,GO:0032502,GO:0032947,GO:0032989,GO:0032990,GO:0032991,GO:0034641,GO:0034729,GO:0034968,GO:0035616,GO:0036211,GO:0036459,GO:0040011,GO:0040029,GO:0042063,GO:0042221,GO:0042330,GO:0042393,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043543,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045787,GO:0045814,GO:0045892,GO:0045893,GO:0045931,GO:0045934,GO:0045935,GO:0046483,GO:0046695,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051052,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051603,GO:0051674,GO:0051726,GO:0060255,GO:0061564,GO:0061578,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070461,GO:0070536,GO:0070646,GO:0070647,GO:0071108,GO:0071704,GO:0071819,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097485,GO:0099114,GO:0101005,GO:0120036,GO:0120039,GO:0140096,GO:0140110,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902493,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905368,GO:1990234,GO:1990380,GO:2000112,GO:2000113,GO:2000779,GO:2001020,GO:2001032,GO:2001141
EggNOG free text desc.ubiquitin carboxyl-terminal hydrolase
EggNOG OGsCOG5560@1,KOG1867@1,KOG1867@2759,KOG1870@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03021,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size606
Cds size606
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931333.251053-CDS-H-elongata_contig93703:1133..16671622931333.251053-CDS-H-elongata_contig93703:1133..1667Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93703 1134..1667 +
1691679793.7674222-CDS-H-elongata_contig93703:1133..16671691679793.7674222-CDS-H-elongata_contig93703:1133..1667Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93703 1134..1667 +
1622931333.2649584-CDS-H-elongata_contig93703:1928..20001622931333.2649584-CDS-H-elongata_contig93703:1928..2000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93703 1929..2000 +
1691679793.7791674-CDS-H-elongata_contig93703:1928..20001691679793.7791674-CDS-H-elongata_contig93703:1928..2000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93703 1929..2000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93703.16804.1prot_H-elongata_contig93703.16804.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93703 1134..2000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93703.16804.1

>prot_H-elongata_contig93703.16804.1 ID=prot_H-elongata_contig93703.16804.1|Name=mRNA_H-elongata_contig93703.16804.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp
PGQQTNTIRVPGKPKCQECEEHTLNELDSVLTCLECGYTGCVSPPNRHLL
RHCLTQPGGSHCFAVSRARAEIFCVHCCDYVYDVEFDAAVSRADDDFELP
DFRDSVFGGDERVRGRRRRRAGRDGHYVLTDRFGQQPGRERSWPPPVLLS
PARGRLVAAGVRGMFNLGNTCFMTSVLQAVLHISVMQSFFSGKGHEPAKC
ER
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mRNA from alignment at H-elongata_contig93703:1134..2000+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93703.16804.1 ID=mRNA_H-elongata_contig93703.16804.1|Name=mRNA_H-elongata_contig93703.16804.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=867bp|location=Sequence derived from alignment at H-elongata_contig93703:1134..2000+ (Himanthalia elongata Himel1 dioecious)
CCCGGACAACAAACCAACACCATACGCGTGCCCGGGAAACCCAAGTGCCA
AGAATGTGAAGAGCACACCCTGAACGAGCTCGACAGTGTGCTCACGTGCC
TTGAGTGTGGCTACACGGGCTGTGTATCGCCGCCTAATCGCCACCTACTC
CGCCACTGCCTCACGCAGCCCGGCGGAAGCCATTGCTTCGCCGTGAGCCG
TGCGCGCGCTGAGATTTTTTGCGTGCACTGCTGTGACTACGTCTACGACG
TCGAGTTTGACGCGGCAGTTTCTCGCGCCGATGACGATTTTGAGCTGCCT
GATTTCCGGGACAGCGTGTTTGGCGGCGACGAGCGAGTAAGAGGGAGGCG
GCGGCGGCGAGCGGGGAGGGATGGACATTACGTTCTCACGGATCGGTTTG
GGCAGCAGCCAGGGAGAGAGCGATCTTGGCCACCGCCGGTTCTGTTGTCT
CCAGCGAGGGGTCGGCTCGTGGCCGCGGGGGTGCGTGGAATGTTCAACCT
CGGCAATACGTGCTTCATGACTTCTGTGCTACAGGTGCGATTTGTTATTG
TTATTGTTGCTGTCGTTGGTTGGAATGCTCGAACTAAAGCTCCAAAGCTA
CGGCAGACGGCGTTTTCACCCTGAGATTTTTCTCATGCGCCGCGGTGTCC
AATGGCGTGAGTTCATCTGGAACCTTAGACGCTCTCGAGTGCGCCATCGG
TGCGGTTACGGCACATGCCTCTTGTAAAGCTTTCAACGACATGGTATAGG
GTAAGGTATGATACGTACGCGACACGGTGCAATACGCGAACGCAGGCGGT
GCTCCACATCTCCGTGATGCAATCATTTTTCAGCGGGAAAGGGCACGAAC
CGGCGAAGTGCGAGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig93703:1134..2000+

>mRNA_H-elongata_contig93703.16804.1 ID=mRNA_H-elongata_contig93703.16804.1|Name=mRNA_H-elongata_contig93703.16804.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at H-elongata_contig93703:1134..2000+ (Himanthalia elongata Himel1 dioecious)
CCCGGACAACAAACCAACACCATACGCGTGCCCGGGAAACCCAAGTGCCA
AGAATGTGAAGAGCACACCCTGAACGAGCTCGACAGTGTGCTCACGTGCC
TTGAGTGTGGCTACACGGGCTGTGTATCGCCGCCTAATCGCCACCTACTC
CGCCACTGCCTCACGCAGCCCGGCGGAAGCCATTGCTTCGCCGTGAGCCG
TGCGCGCGCTGAGATTTTTTGCGTGCACTGCTGTGACTACGTCTACGACG
TCGAGTTTGACGCGGCAGTTTCTCGCGCCGATGACGATTTTGAGCTGCCT
GATTTCCGGGACAGCGTGTTTGGCGGCGACGAGCGAGTAAGAGGGAGGCG
GCGGCGGCGAGCGGGGAGGGATGGACATTACGTTCTCACGGATCGGTTTG
GGCAGCAGCCAGGGAGAGAGCGATCTTGGCCACCGCCGGTTCTGTTGTCT
CCAGCGAGGGGTCGGCTCGTGGCCGCGGGGGTGCGTGGAATGTTCAACCT
CGGCAATACGTGCTTCATGACTTCTGTGCTACAGCCCGGACAACAAACCA
ACACCATACGCGTGCCCGGGAAACCCAAGTGCCAAGAATGTGAAGAGCAC
ACCCTGAACGAGCTCGACAGTGTGCTCACGTGCCTTGAGTGTGGCTACAC
GGGCTGTGTATCGCCGCCTAATCGCCACCTACTCCGCCACTGCCTCACGC
AGCCCGGCGGAAGCCATTGCTTCGCCGTGAGCCGTGCGCGCGCTGAGATT
TTTTGCGTGCACTGCTGTGACTACGTCTACGACGTCGAGTTTGACGCGGC
AGTTTCTCGCGCCGATGACGATTTTGAGCTGCCTGATTTCCGGGACAGCG
TGTTTGGCGGCGACGAGCGAGTAAGAGGGAGGCGGCGGCGGCGAGCGGGG
AGGGATGGACATTACGTTCTCACGGATCGGTTTGGGCAGCAGCCAGGGAG
AGAGCGATCTTGGCCACCGCCGGTTCTGTTGTCTCCAGCGAGGGGTCGGC
TCGTGGCCGCGGGGGTGCGTGGAATGTTCAACCTCGGCAATACGTGCTTC
ATGACTTCTGTGCTACAGGCGGTGCTCCACATCTCCGTGATGCAATCATT
TTTCAGCGGGAAAGGGCACGAACCGGCGAAGTGCGAGAGGGCGGTGCTCC
ACATCTCCGTGATGCAATCATTTTTCAGCGGGAAAGGGCACGAACCGGCG
AAGTGCGAGAGG
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