mRNA_H-elongata_contig936.16792.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig936.16792.1
Unique NamemRNA_H-elongata_contig936.16792.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig936.16792.1 vs. uniprot
Match: D8LNX2_ECTSI (Protein phosphatase 2C containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNX2_ECTSI)

HSP 1 Score: 442 bits (1136), Expect = 3.880e-155
Identity = 211/265 (79.62%), Postives = 239/265 (90.19%), Query Frame = 1
Query:    1 MEEKLGGSGGARLFVVLDGHGEIGHLVSRRCAERLPKMVVESGFGVGRAIVRLRDDLRSCPVDCSSSGATCVLVTIRGKKICIANLGDSKCVLGRLVNGQICSVPLSEDHKPDRPDEKQRILDLGGQVGSRQLVVGSSPSGPIRIPMGPARVWYRCRGEVMGLAMSRSLGDDIAHQAGVSSEPEIMEHDIDASDQFLILATDGVWDVMDIAQAAQIVQGYASRCQGNAWDPQGAAALLSHTARKRWEGLSAIIDDITAMVVRLNI 795
            M+E LGG G  RLFVVLDGHGE+GHLVSRRC+ +LP +VV+S   V RA +R+ DDLRSCPVDC+SSGATCVL TIR  KI +ANLGDSKCVL RLVNGQ+C+VPLS DHKPDRPDE+QRIL +GGQVGSR LVVGS+PSGPIRIPMGPARVWYRCRGE+MGLAMSRSLGDDIAHQAGVSSEPE+ EH IDA+DQFLILATDGVWDV +I QA QIVQGYASRC+GN+WDPQGAA+LL+H+ARKRWEGLSA++DDITA+VVRL +
Sbjct:   18 MKEDLGGLG-VRLFVVLDGHGELGHLVSRRCSAKLPNLVVDSNLCVARATLRMADDLRSCPVDCASSGATCVLTTIRDGKISVANLGDSKCVLARLVNGQVCAVPLSHDHKPDRPDERQRILAIGGQVGSRHLVVGSNPSGPIRIPMGPARVWYRCRGEIMGLAMSRSLGDDIAHQAGVSSEPEVKEHQIDANDQFLILATDGVWDVTEIGQAVQIVQGYASRCRGNSWDPQGAASLLAHSARKRWEGLSAVVDDITALVVRLTV 281          
BLAST of mRNA_H-elongata_contig936.16792.1 vs. uniprot
Match: A0A835YTT3_9STRA (Phosphatase 2C-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT3_9STRA)

HSP 1 Score: 309 bits (791), Expect = 1.290e-101
Identity = 166/289 (57.44%), Postives = 199/289 (68.86%), Query Frame = 1
Query:    1 MEEKL---GGSGGARLFVVLDGHGEIGHLVSRRCAERLPKMVVESGFGVGRAIVRLRDDLRS-CPVDCSSSGATCVLVTIRGK-KICIANLGDSKCVLGRLVNG-------------------QICSVPLSEDHKPDRPDEKQRILDLGGQVGSRQLVVGSSPSGPIRIPMGPARVWYRCRGEVMGLAMSRSLGDDIAHQAGVSSEPEIMEH--DIDASDQFLILATDGVWDVMDIAQAAQIVQGYASRCQGNAWDPQGAAALLSHTARKRWEGLSAIIDDITAMVVRL 789
            MEE L   GG    R+F VLDGHGE GHLV+RRC ERLP+++  +     RA V L +DL S   VDC  SGATCV+VTI  +  + +ANLGDS+CVLGR   G                   Q+C+VPL+ DHKPDRPDE+ RI   GGQVGSRQL+VGS P+GPIRIPMGPARVWY+ RGE MGLAMSRS+GD IAH AGVS++PE++EH  D DA D FL+LA+DGVWDV+D   A  IV   A+   G  WDP+ AA      ARKRW+GLS +IDDITA+VV+L
Sbjct:   67 MEEALDIDGGGDRLRVFAVLDGHGEAGHLVTRRCRERLPQLLRAARGDAARACVALHEDLASGVHVDCQCSGATCVVVTISARGAVTVANLGDSRCVLGRWECGGXXXXXXXXXXXMVGRAQRQVCAVPLTTDHKPDRPDERARIQAAGGQVGSRQLIVGSGPAGPIRIPMGPARVWYQVRGETMGLAMSRSIGDVIAHAAGVSAQPEVVEHCLDRDAGDAFLVLASDGVWDVLDAQAAVHIVAACAAAAGGAEWDPREAAXXXXXAARKRWDGLSPMIDDITALVVKL 355          
BLAST of mRNA_H-elongata_contig936.16792.1 vs. uniprot
Match: A0A7S4D964_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D964_HETAK)

HSP 1 Score: 295 bits (755), Expect = 8.540e-97
Identity = 140/253 (55.34%), Postives = 188/253 (74.31%), Query Frame = 1
Query:   37 LFVVLDGHGEIGHLVSRRCAERLPKMVVESGFGVGRAIVRLRDDL-RSCPVDCSSSGATCVLVTIRGKKICIANLGDSKCVLGRLVNGQICSVPLSEDHKPDRPDEKQRILDLGGQVGSRQLVVGSSPSGPIRIPMGPARVWYRCRGEVMGLAMSRSLGDDIAHQAGVSSEPEIMEHDIDASDQFLILATDGVWDVMDIAQAAQIVQGYASRCQGNAWDPQGAAALLSHTARKRWEGLSAIIDDITAMVVRLN 792
            +F VLDGHG+ GHLVS +C ERLP++  E+G  + R  + ++ +L +S  +D   SGATCV+  + G+++ + NLGDSK VLGR VNG     PL+ DHKPDRPDE+QRIL  GG+VG RQLVVG+ P+GP+R+PMGP R+WY+ RGE MGLAMSRSLGD I H  GVS++PE+ EH +D  D FL+L +DG+WDV D+ QA QIVQG  ++   + WDP+ AA  L+ +AR+RWE +S ++DDITA+VV+L 
Sbjct:   59 MFCVLDGHGQQGHLVSTQCRERLPQLYRETGNDLSRTCLAMQAELEKSTAMDVKCSGATCVICVVEGRRLTVGNLGDSKAVLGRRVNGVTLPHPLTNDHKPDRPDERQRILQAGGKVGCRQLVVGNGPNGPVRLPMGPMRIWYQVRGETMGLAMSRSLGDGIVHALGVSADPELTEHLLDGEDLFLLLGSDGIWDVTDLNQAVQIVQGVVNK-NPHGWDPREAAEELAVSARRRWESMSQMVDDITAIVVKLQ 310          
BLAST of mRNA_H-elongata_contig936.16792.1 vs. uniprot
Match: A0A7S2WTT9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTT9_9STRA)

HSP 1 Score: 281 bits (720), Expect = 8.110e-90
Identity = 141/265 (53.21%), Postives = 183/265 (69.06%), Query Frame = 1
Query:    7 EKLGGSGGARLFVVLDGHGEIGHLVSRRCAERLPKMVVESGFGVGRAIVRLRDDLRSCPVDCSSSGATCVLVTIRGKKICIANLGDSKCVLGRLVNGQICSVPLSEDHKPDRPDEKQRILDLGGQVGSRQLVVGSSPSGPIRIPMGPARVWYRCRGEVMGLAMSRSLGDDIAHQAGVSSEPEIMEHDIDASDQFLILATDGVWDVMDIAQAAQIVQGYASRCQGNA---WDPQGAAALLSHTARKRWEGLSAIIDDITAMVVRLN 792
            E  GG      + V DGHGE GHLVSR   ERL K+ +E      RA  +++ +L    VD   SGATCV+V +RG  I + N GDS+ VLGR  NG I ++ L+ DHKPDRPDE++R++  GGQVGSRQLVVG + +GP+ +P+GP RVWY+ RGE MGLAMSRSLGD IAH  GVSSEPE+ EH + ++D F+ILA+DG+WDV++  QA QIV  + +R   +    WD   AA +L+ TAR+RWE LS ++DDITA+VV L 
Sbjct:  168 EHSGGESDLHAWGVFDGHGEFGHLVSRIIRERLGKIWLECSQNFSRAFWQMQSELDKSSVDARCSGATCVMVVLRGNTIQVGNCGDSRAVLGRRSNGTISALQLTSDHKPDRPDERRRVMQAGGQVGSRQLVVGHNANGPVTLPLGPPRVWYQIRGETMGLAMSRSLGDGIAHSNGVSSEPEVTEHAVSSTDVFVILASDGIWDVIETNQAVQIVGNHFARATASGSTQWDVVDAAMVLTTTARRRWESLSPMVDDITAVVVDLR 432          
BLAST of mRNA_H-elongata_contig936.16792.1 vs. uniprot
Match: A0A7S3ZZR6_9STRA (Hypothetical protein n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZR6_9STRA)

HSP 1 Score: 268 bits (684), Expect = 2.190e-84
Identity = 139/256 (54.30%), Postives = 177/256 (69.14%), Query Frame = 1
Query:   34 RLFVVLDGHGEIGHLVSRRCAERLPKMVVESGFGVGRAIVRLRDDLRSCPVDCSSSGATCVLVTIRGKKICIANLGDSKCVLGRLVNGQICSVPLSEDHKPDRPDEKQRILDLGGQVGSRQLVVGSSPSGPIRIPMGPARVWYR---CRGEVMGLAMSRSLGDDIAHQAGVSSEPEIMEHDIDASDQFLILATDGVWDVMDIAQAAQIVQGYASRCQGNAWDPQGAAALLSHTARKRWEGLSAIIDDITAMVVRLN 792
            R + VLDGHGEIGHLVS+RC+++L +  V+S   +  A   +++DL  C +D   SGATCV V +    + +AN+GDS+ VLG L    IC+ PL+ DHKPDR DE+ RI+  GGQV  RQLVVG S +GPI +P+GP RVWYR     G+ MGLAMSRS GD IAH  GVS EPEI ++++D +D+FLI ATDGVWDV+D AQA +IV     R   N WDP  AA  L  +AR RW+ LS +IDDITA+VV L+
Sbjct:  158 RCYGVLDGHGEIGHLVSKRCSQQLCEHFVKSQLDMSLAFRLMQEDLSQCELDIKCSGATCVFVHLHDSYLRVANIGDSRGVLGHLDGANICATPLTSDHKPDRHDEQIRIVACGGQVSCRQLVVGHSSNGPITLPLGPPRVWYRRNSSHGDTMGLAMSRSFGDAIAHGLGVSCEPEITQYNLDLADKFLICATDGVWDVIDNAQAVKIVHTLYER--SNDWDPLEAAHTLCISARNRWQSLSPMIDDITALVVDLH 411          
BLAST of mRNA_H-elongata_contig936.16792.1 vs. uniprot
Match: A0A7S1U9X7_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9X7_9STRA)

HSP 1 Score: 263 bits (672), Expect = 9.320e-81
Identity = 137/284 (48.24%), Postives = 181/284 (63.73%), Query Frame = 1
Query:   37 LFVVLDGHGEIGHLVSRRCAERLPKMVVESGFGVGRAIVRLRDDLRSCPVDCSSSGATCVLVTI----RGK----KICIANLGDSKCVLGRLVNGQICSVPLSEDHKPDRPDEKQRILDLGGQVGSRQLVVGSSPSGPIRIPMGPARVWYRCRGEVMGLAMSRSLGDDIAHQAGVSSEPEIMEHDIDASDQFLILATDGVWDVMDIAQAAQIV------------------------QGYASR-CQGNAWDPQGAAALLSHTARKRWEGLSAIIDDITAMVVRL 789
            LF V DGHGE GHLVSR+C E +P+ ++ +   +G A    +D  +SC VDCS SGAT V++ I    RG+     + I N GDS+ V+ R+VN  I  V L++DHKPDRPDE++RI  +GG+VG+RQ+VVG  P+G I +P+GPAR+WY CRGE MGLAMSRSLGD IAH+ G S EPE+   ++   D FL+LATDGVWDV+D   A  I                          G++S   +   WDP+ AA  +  TAR+RWE LSA++DDIT +VV+L
Sbjct:  316 LFAVFDGHGEFGHLVSRKCREEMPQRLISNRLDMGAAFDEAQDHFKSCEVDCSCSGATAVVIIIDNATRGRGGSSTLRIGNCGDSRAVVARVVNNTITGVTLTKDHKPDRPDERRRITAMGGKVGTRQVVVGHGPNGAITMPVGPARIWYNCRGETMGLAMSRSLGDLIAHRVGGSHEPEMTMRNLQEEDMFLLLATDGVWDVLDANAAVDIAFEVMMEAREEAGLGPKRVPMGGAAAGFSSEEWRSIPWDPEVAAKRICTTARRRWENLSAMVDDITCVVVKL 599          
BLAST of mRNA_H-elongata_contig936.16792.1 vs. uniprot
Match: A0A482S1K4_9ARCH (Protein serine/threonine phosphatase 2C family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1K4_9ARCH)

HSP 1 Score: 257 bits (656), Expect = 3.540e-80
Identity = 125/254 (49.21%), Postives = 172/254 (67.72%), Query Frame = 1
Query:   34 RLFVVLDGHGEIGHLVSRRCAERLPKMVVESGFGVGRAIVRLRDDLRSCPVDCSSSGATCVLVTIRGKKICIANLGDSKCVLGRL-VNGQICSVPLSEDHKPDRPDEKQRILDLGGQVGSRQLVVGSSPSGPIRIPMGPARVWYRCRGEVMGLAMSRSLGDDIAHQAGVSSEPEIMEHDIDASDQFLILATDGVWDVMDIAQAAQIVQGYASRCQGNAWDPQGAAALLSHTARKRWEGLSAIIDDITAMVVRLN 792
            R++ VLDGHGE GH+VS+RC E  P  +  + + V  A   +++DL S  +D   SGATCV+  +   ++ + N GDS+ VLGR   +G I + PLS DHKPD+P+E++RIL  GG +G RQ++V     GP+ +P+GP RVWY+ RGE +GLAMSRSLGD I H+ GV++EPE+ EH ID  D+F+ILATDGVWDV+D   A Q+V G ASR     W    A+  +   AR RWE LS ++DDIT +VV+++
Sbjct:  184 RVYCVLDGHGEHGHIVSKRCRENFPHFLKSTNWQVEAAFNMMQNDLTSSEIDVRCSGATCVIACVSNNRLTVYNCGDSRAVLGRRSASGAIAAYPLSNDHKPDKPEERKRILGCGGHLGCRQVLVNQGNRGPVSMPVGPCRVWYQHRGETLGLAMSRSLGDSIVHKVGVTAEPELTEHQIDDHDEFIILATDGVWDVVDNNHAVQMVFGVASRSVN--WSVLEASNAVCRFARSRWEKLSPMVDDITCVVVKIH 435          
BLAST of mRNA_H-elongata_contig936.16792.1 vs. uniprot
Match: A0A7S2CMF9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMF9_9STRA)

HSP 1 Score: 245 bits (626), Expect = 2.380e-75
Identity = 120/268 (44.78%), Postives = 179/268 (66.79%), Query Frame = 1
Query:    1 MEEKLGGSGGARLFVVLDGHGEIGHLVSRRCAERLPKMVVESGFGVGRAIVRLRDDLRSCPVDCSSSGATCVLVTIRGKKICIANLGDSKCVLGRLVNG--QICSVPLSEDHKPDRPDEKQRILDLGGQVGSRQLVVGSSPSGPIRIPMGPARVWYRCRGEVMGLAMSRSLGDDIAHQAGVSSEPEIMEHDIDASDQFLILATDGVWDVMDIAQAAQIVQGYASRC--QGNAWDPQGAAALLSHTARKRWEGLSAIIDDITAMVVRLN 792
            + EK+ G      ++V DGHG+ GHLVS+   E++ K  +++ F +    + ++  L    VD  SSG+TCV+V +    + +AN GDS+ VLG++VN   Q+ ++ L++DHKPDRPDE+ R+   GGQVG RQ+++    S  +R+P+GPARVWY  RGE  GLAMSRSLGD I H  GVS EPE+ +  +D +++F+I+ATDG+WDV+  +   QIV  + +      + W+PQ AA +L  TAR+RWEG+S ++DDITA+V+ L+
Sbjct:  189 LMEKVQGESHRHTWIVFDGHGDRGHLVSKFGREKMGKTWIDNKFRLRETFLSMQQQLNKSSVDVRSSGSTCVMVVLDNDCLKVANCGDSRAVLGKVVNSSSQLATIVLTDDHKPDRPDERMRVEKAGGQVGCRQMLMNRGSS--VRVPLGPARVWYTNRGETTGLAMSRSLGDAIVHTFGVSEEPEVTQRTLDKTERFIIVATDGIWDVLHSSHVVQIVDKHFNEAARSNSPWNPQDAAMVLCLTARRRWEGMSTMVDDITAVVIDLS 454          
BLAST of mRNA_H-elongata_contig936.16792.1 vs. uniprot
Match: A0A7S2XVV9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVV9_9STRA)

HSP 1 Score: 229 bits (583), Expect = 5.270e-71
Identity = 110/191 (57.59%), Postives = 139/191 (72.77%), Query Frame = 1
Query:    1 MEEKLGGSGGARLFVVLDGHGEIGHLVSRRCAERLPKMVVESGFGVGRAIVRLRDDLRSCP-VDCSSSGATCVLVTIRGKKICIANLGDSKCVLGRLVNGQICSVPLSEDHKPDRPDEKQRILDLGGQVGSRQLVVGSSPSGPIRIPMGPARVWYRCRGEVMGLAMSRSLGDDIAHQAGVSSEPEIMEHDI 570
            +EE+ GGSG    + VLDGHG+ GHLVS    E L +   E G  V RA +R+++DL + P +D   SGATCV+  +RG+ + + NLGDS+CVL R VNG +  V LS DHKPDRPDE+QRIL  GG+VG RQLVVG+ PSGP+R+PMGP R+WY+ RGE MGLAMSRSLGD I H  GVS++PE+ EH +
Sbjct:  103 LEERCGGSGDEGFYCVLDGHGQQGHLVSGYIRENLVRHYSECGQDVSRACLRMQEDLDTTPTLDTKCSGATCVIAILRGRSLLVGNLGDSRCVLARRVNGVLSPVALSNDHKPDRPDERQRILAAGGKVGCRQLVVGNGPSGPVRLPMGPMRIWYQVRGETMGLAMSRSLGDSIVHTQGVSADPELKEHQV 293          
BLAST of mRNA_H-elongata_contig936.16792.1 vs. uniprot
Match: A0A7S2NWU1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NWU1_9STRA)

HSP 1 Score: 193 bits (491), Expect = 3.340e-56
Identity = 102/259 (39.38%), Postives = 155/259 (59.85%), Query Frame = 1
Query:   25 GGARLFVVLDGHGEIGHLVSRRCAERLPKMVVESGFGVGRAIVRLRDDLRSCPVDCSSSGATCVLVTIR-GKKICIANLGDSKCV-LGRLVNGQICSVPLSEDHKPDRPDEKQRILDLGGQVGSRQLVVGSSPSGPIRIPMGPARVWYRCRGEVMGLAMSRSLGDDIAHQAGVSSEPEIMEHDIDASDQFLILATDGVWDVMDIAQAAQIVQGYASRCQGNAWDPQGAAALLSHTARKRWEGLSAI-IDDITAMVVRLN 792
            G   +++V DGHG  GH+VS+ C   LPK++ E+G+   RAI  L+ DL S  +D   SG TCV   ++  + I + N+GDS+ + L R  N  + ++PLS DHKP + DE++RIL+ GG++ S+    G            P+RVW+      MGLAMSRS+GD+ AH+ GVS EP+I  H I+  D  ++LA+DG+WDV    + A ++Q   +    + W+ + AA  L+  AR RWE +S   IDD+T +V+++ 
Sbjct:  119 GSPSVYMVFDGHGRFGHVVSKHCKAVLPKILAETGYDQERAISVLQSDLESSAIDIECSGCTCVTAIVKQNRTIEVGNVGDSRAIILQRSPNNTLKALPLSIDHKPSQLDERKRILETGGRIASKHCSAG------------PSRVWFEYNNTTMGLAMSRSVGDEFAHRVGVSHEPQIFHHKIEPQDTCIVLASDGLWDVYSNDEVAHLIQTCINGNYAD-WNAKIAAVFLTKMARMRWEHISTEHIDDVTCLVIKIE 364          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig936.16792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNX2_ECTSI3.880e-15579.62Protein phosphatase 2C containing protein n=1 Tax=... [more]
A0A835YTT3_9STRA1.290e-10157.44Phosphatase 2C-containing protein n=1 Tax=Tribonem... [more]
A0A7S4D964_HETAK8.540e-9755.34Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2WTT9_9STRA8.110e-9053.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3ZZR6_9STRA2.190e-8454.30Hypothetical protein n=4 Tax=Pelagomonas calceolat... [more]
A0A7S1U9X7_9STRA9.320e-8148.24Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A482S1K4_9ARCH3.540e-8049.21Protein serine/threonine phosphatase 2C family pro... [more]
A0A7S2CMF9_9STRA2.380e-7544.78Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2XVV9_9STRA5.270e-7157.59Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2NWU1_9STRA3.340e-5639.38Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig936contigH-elongata_contig936:4328..8538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score444.1
Seed ortholog evalue4.5e-122
Seed eggNOG ortholog2880.D8LNX2
KEGG koko:K04403,ko:K14803,ko:K17500
KEGG Pathwayko04010,ko04064,ko04380,ko04620,ko04621,ko04668,ko05140,ko05145,ko05168,ko05169,map04010,map04064,map04380,map04620,map04621,map04668,map05140,map05145,map05168,map05169
KEGG ModuleM00686
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein phosphatase 2C (PP2C)-like domain
Ec32 orthologEc-08_005490.1
Exons6
Model size795
Cds size795
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig936.16792.1prot_H-elongata_contig936.16792.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig936 4328..8538 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931331.730399-CDS-H-elongata_contig936:4327..44681622931331.730399-CDS-H-elongata_contig936:4327..4468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 4328..4468 -
1691679793.2182431-CDS-H-elongata_contig936:4327..44681691679793.2182431-CDS-H-elongata_contig936:4327..4468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 4328..4468 -
1622931331.754391-CDS-H-elongata_contig936:4784..48531622931331.754391-CDS-H-elongata_contig936:4784..4853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 4785..4853 -
1691679793.229744-CDS-H-elongata_contig936:4784..48531691679793.229744-CDS-H-elongata_contig936:4784..4853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 4785..4853 -
1622931331.7730768-CDS-H-elongata_contig936:5872..60761622931331.7730768-CDS-H-elongata_contig936:5872..6076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 5873..6076 -
1691679793.239218-CDS-H-elongata_contig936:5872..60761691679793.239218-CDS-H-elongata_contig936:5872..6076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 5873..6076 -
1622931331.7872932-CDS-H-elongata_contig936:7501..76421622931331.7872932-CDS-H-elongata_contig936:7501..7642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 7502..7642 -
1691679793.2487779-CDS-H-elongata_contig936:7501..76421691679793.2487779-CDS-H-elongata_contig936:7501..7642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 7502..7642 -
1622931331.8059955-CDS-H-elongata_contig936:8002..81761622931331.8059955-CDS-H-elongata_contig936:8002..8176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 8003..8176 -
1691679793.2648735-CDS-H-elongata_contig936:8002..81761691679793.2648735-CDS-H-elongata_contig936:8002..8176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 8003..8176 -
1622931331.8201804-CDS-H-elongata_contig936:8472..85381622931331.8201804-CDS-H-elongata_contig936:8472..8538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 8473..8538 -
1691679793.2734637-CDS-H-elongata_contig936:8472..85381691679793.2734637-CDS-H-elongata_contig936:8472..8538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig936 8473..8538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig936.16792.1

>prot_H-elongata_contig936.16792.1 ID=prot_H-elongata_contig936.16792.1|Name=mRNA_H-elongata_contig936.16792.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp
MEEKLGGSGGARLFVVLDGHGEIGHLVSRRCAERLPKMVVESGFGVGRAI
VRLRDDLRSCPVDCSSSGATCVLVTIRGKKICIANLGDSKCVLGRLVNGQ
ICSVPLSEDHKPDRPDEKQRILDLGGQVGSRQLVVGSSPSGPIRIPMGPA
RVWYRCRGEVMGLAMSRSLGDDIAHQAGVSSEPEIMEHDIDASDQFLILA
TDGVWDVMDIAQAAQIVQGYASRCQGNAWDPQGAAALLSHTARKRWEGLS
AIIDDITAMVVRLNI
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mRNA from alignment at H-elongata_contig936:4328..8538-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig936.16792.1 ID=mRNA_H-elongata_contig936.16792.1|Name=mRNA_H-elongata_contig936.16792.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4211bp|location=Sequence derived from alignment at H-elongata_contig936:4328..8538- (Himanthalia elongata Himel1 dioecious)
ATGGAAGAGAAGCTCGGTGGCAGCGGCGGGGCTCGACTGTTTGTCGTCCT CGACGGGCATGGCGAGGTACGCCCACGGAGAGCAATGATGCCAGCAATTC CTTTGTTCCTATCTATCGTAAAAAACGATTTTTCGGAGAATACGCCACGA CTGAGTTCCTGCGCGCTCTCTGTACCCCGCGATACCTCCATCGCCACCAT AAGTTGCACATGTTACTTATTTCCCCCCCTTAAAAAAGATTGCTGTACAT TCAGTGCAGTTTGCTACTTTTATAAGAAAAACCCCACATACTACATCCAC CTCCTTCTGCGTCCGCCTCCGCCCCACATCACTCTTCTCCCCGACCCCAC GTCTCGACAAAGATTGGACATCTTGTAAGCCGAAGGTGCGCCGAACGTCT TCCAAAGATGGTGGTGGAAAGTGGCTTCGGGGTGGGCCGGGCAATTGTCC GGCTGAGAGACGATCTGCGTAGCTGTCCGGTGGACTGTTCATCGAGCGGC GCCACGTGCGTCCTCGTAACAATACGTGGAAAAAAGGTGGCATGAATGAC AGCGTGTTGTCTGATTCCAAGAGCAGCGTGGTGGGAGTAGTTCTGGTTGG TAGTTTAAGCCGACGGCAGGCAGCAATAGCAACACCGTTGTACTGTTGTT GTTGTTGTACGAGATATATTTACAGTGTTCTCTGACGGATGCCCCCTTAC ACCTCTACTAGGAGAGTCTCCTAGTTGGAAAGTCCCTCTTTGTTGTGGAA GGGCATTGGCGAGCCATGAATATACACATTTAAGTTGGGAGGATCGTCTC GAGTAATGAATCATTCGTCGTGTCACCATGTACTTCCTCCATCAGTTGCT ATGTGTAACGGTCCCCCTGGTCTTGTCTGGTCGCGGTTATTCCAAGATTT GCATCGCTAACCTAGGAGACTCCAAGTGCGTCTTGGGGAGACTCGTGAAC GGTCAAATATGCTCGGTCCCGCTATCGGAGGACCACAAGCCCGATCGGCC GGATGAAAAGCAGAGGATACTCGACCTTGGGGGCCAGGTGATCGCGCGTC AAAAATCAAAAGGATAATAAATGTCATCACCGGACTAAAGTACTTGTTAT GTTTTTAGCGGCAGTCACCCCCCCCCCCAACCCTCCTTGACAAAAAATAA AACAAATGCTGTTTGAAATAGTTGCACGTTTGTTTGCATACTACCTCGTA TTTCATTAAATACGTTTCTTTGCCGACATGCTTCTTTTTAGAAAAAGGTA TGAAAAGGGTATTTTTCCATTACTTGTGCATGTATTTTCTTCATCATGTT GTTTTTTTCGTTTGTTTCTACCGCAAAAAAGCATTAGATAAAAGTGGAAA CCCCAAAGACTGGAGATATCAGCTGTCGCTAGGACTGAATCTAGGGGACG GAGTGGAAATAATGTCTTAAGTCTGTTGCCTCTTCATATCAAATATGTTT TACATCGCAGGTCTCATGAGCCTTTCACTTAAAAAACATATCAACTCATC ATTCAAACCCTACAAACATTTTTTGTTAATGGTGTGATATGGCCGGGTCT TATCGAAATACAAAAATTAAAATTTTCAGCCGATTTAAATTAAAATCGGG CTCTGATTGATCGAAAGCTAAATAACGCATAGCCTTCGTCCAATCAGAGC CCGATTTAAATATAAATTGGCTAGAATTTAAACTTTTGTAACCCCGTTAA TACCCGCCCTGTATACCGGTATATAAAAATTCTGGTGGTGTGGTTTGCCC ATTTTTTTTTTTTTTTTATAACAGCGGAAACCCTAGATACAGGGGGCAGG ATATATCTTTCCCTGGGGCCAAATCTAAGGAAGTCGAAATGGCTAAGTTT ATCCACATTTCATCCACCTGGGGTCAGGGAACATATATTTCCTCTCCCCG AGAATCCCGATGCCTATGATCCGGGGAGACTGTCAGATACCGCCGGTCCC GGGGGGTTTCAGCTTAATGAAGCCACTTTTACCGAGGGGAACAAAGCCAA TCGAAAACAAACGGACAACCACAACCACCAAGCCCATACTACCCCATAAT ATCCTGTTGATCCATACTCTGCTATACTCTGTTGTACCTAGTATATTATG CTACCACTACCTCAGAGGAGTCTGGCAACGACAATGTCTTGGACAAAGTA TGGGATATTCATTTTTCGGTGGTTGATCTTGATGTGGGAATGATCTTGAC GTGGGAATGGCTCAAGGATATGTGAGAGGAGATACAGGGTACGCCGCCGC CGTTGGAGGGTAAATCGGCATTGAGGAGAAAGGCTGCAAGGATAGCAGGG GAAAGGCAATGGCGAGGTTCGGAGAGGGGGGAGGGAGGGCTGTGCTGCAA TGCACAACAAAGGCCTACTTGGGACCGTACGACCCCAAAATCGTGCACAT GCCAGAAAAGCTCCACATCGAGTGCTCAAGACCCAATTCGCTTGTTGTGC CCACGTCTCCAGGTTGGCTCCAGGCAGCTAGTGGTAGGTTCAAGCCCCTC CGGACCGATTCGCATTCCTATGGGCCCCGCTAGAGTGTGGTATCGATGCC GAGGGGAAGTCATGGGGTTGGCCATGAGCCGCAGCCTGGGGGACGACATC GCCCACCAGGCGGGCGTTTCCTCCGAGCCGGAGATCATGGAACATGATAT CGATGCGAGCGACCAGGTGTGGGAGTACGGCAGCGATAGTGCAATACTGA TGCATGAAGCACACAGACATAGCGTAGGAGCGGGATCATGCTCGTAAGAA GAACATAAAAAACGGGATCAATTCCGATCCGGACTCTCCCCCTTCCAGAG GGTGGCCAGAATTCGAGGTCTACAACTATGATGATTGAGCCATTTCGAGG AGGAGGGGGGCGGGGGTACGAAATAGGACGTAAAATTGTGCCACCAAAGC TCCAAACTTGACGAATCCAGGAGTTGATATAATCCTACTTGTGGGTGAAG TTCGCTCGTCGTGGCTGTGTCTCGGGCGACAGGGTCTTGACGGGGCCGGA ATAAGTATAGATTATAGAGAGGGCGTGAGCCTGGGAGATATTTATTATTT TCTATAGCGGAATGGGCAGCGTTACGGTAGGAGGACTGATTGGATAACCC CACCGAAAGAGTGTTAGAAACCCCCCCCCAAATAAAAAATAAACACCCCA TTGACAAGAGTGTGAGGACCTCCCCCTCCTTTATTTCCCGTTCTTAAAAG TATCTACCATCTACCATCTACCGACGCCCCCTGCTTATTGTCTTCGCTCC CCGACTGCTGCTCATCTTGTGTACTGCTTTTAGTGTGAAACATGGACATG ATACCTATAGCGTCGATCGGAACGCCGTCTGGTTTGGCTTAGTTTAGTTT TACGTGTAGCTCGCAACACACAAGAAAATCGCAATTTAAAAATCGTAGTA GGCGGGGACAGGGGACGAACGGGATGGGTAGCGTTGGTTAAGGCGGGATG GATACACATGCAATTTGGCACGTCGAGTGCCCTCACTACCAGAAGACATT TCATTAGATTGTCATAATCTATCAATAGTGTCAACAATAAACAGACACCC TGATAATAGGGGTAATAGGGCTCGAAACACAACGACAAACAAACACTTTA TTATTATAAAGATTACGGGGAAATCCTTAATAAGCCCCTCGCGCGTTCGT CCATGCCTTGGCTGACGATATTATTCTTTTGGCAGTTCCTCATCCTGGCA ACCGATGGAGTCTGGGATGTCATGGATATCGCGCAAGCCGCTCAGATCGT ACAGGTAAAGCGTATCGCAGTGATTATGGTTGGGGCACACACAAGAAAGA CAAATACTTATTAGTGTAGATGACACCGGCAGCCCAGATATCACGCCTGG TATTCCCACCATCGCCAGCTTTGGAGGCGAACCGACGACGAGGATTAGAC CGCAGGCCTCGTAACCTCACTAGTTGCCGTCGGCGTGGACACACACATGC GCGCGCTATTAACTGAGCTTAGTATGCCTTAGGCATGCATAACGGAGCCG CGAAGATATTATTTCCGCCCTTGTCGCGAACCCGACCTCCCCAATCTCTT TCCCCCGCGGTGCTCAATAGGGCTACGCATCCCGGTGCCAAGGAAACGCT TGGGATCCTCAGGGAGCGGCGGCTCTCCTCTCCCACACCGCGAGAAAGCG CTGGGAGGGGCTATCGGCCATAATCGACGACATCACGGCCATGGTGGTTC GACTCAACATC
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Coding sequence (CDS) from alignment at H-elongata_contig936:4328..8538-

>mRNA_H-elongata_contig936.16792.1 ID=mRNA_H-elongata_contig936.16792.1|Name=mRNA_H-elongata_contig936.16792.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig936:4328..8538- (Himanthalia elongata Himel1 dioecious)
ATGGAAGAGAAGCTCGGTGGCAGCGGCGGGGCTCGACTGTTTGTCGTCCT
CGACGGGCATGGCGAGATGGAAGAGAAGCTCGGTGGCAGCGGCGGGGCTC
GACTGTTTGTCGTCCTCGACGGGCATGGCGAGATTGGACATCTTGTAAGC
CGAAGGTGCGCCGAACGTCTTCCAAAGATGGTGGTGGAAAGTGGCTTCGG
GGTGGGCCGGGCAATTGTCCGGCTGAGAGACGATCTGCGTAGCTGTCCGG
TGGACTGTTCATCGAGCGGCGCCACGTGCGTCCTCGTAACAATACGTGGA
AAAAAGATTGGACATCTTGTAAGCCGAAGGTGCGCCGAACGTCTTCCAAA
GATGGTGGTGGAAAGTGGCTTCGGGGTGGGCCGGGCAATTGTCCGGCTGA
GAGACGATCTGCGTAGCTGTCCGGTGGACTGTTCATCGAGCGGCGCCACG
TGCGTCCTCGTAACAATACGTGGAAAAAAGATTTGCATCGCTAACCTAGG
AGACTCCAAGTGCGTCTTGGGGAGACTCGTGAACGGTCAAATATGCTCGG
TCCCGCTATCGGAGGACCACAAGCCCGATCGGCCGGATGAAAAGCAGAGG
ATACTCGACCTTGGGGGCCAGATTTGCATCGCTAACCTAGGAGACTCCAA
GTGCGTCTTGGGGAGACTCGTGAACGGTCAAATATGCTCGGTCCCGCTAT
CGGAGGACCACAAGCCCGATCGGCCGGATGAAAAGCAGAGGATACTCGAC
CTTGGGGGCCAGGTTGGCTCCAGGCAGCTAGTGGTAGGTTCAAGCCCCTC
CGGACCGATTCGCATTCCTATGGGCCCCGCTAGAGTGTGGTATCGATGCC
GAGGGGAAGTCATGGGGTTGGCCATGAGCCGCAGCCTGGGGGACGACATC
GCCCACCAGGCGGGCGTTTCCTCCGAGCCGGAGATCATGGAACATGATAT
CGATGCGAGCGACCAGGTTGGCTCCAGGCAGCTAGTGGTAGGTTCAAGCC
CCTCCGGACCGATTCGCATTCCTATGGGCCCCGCTAGAGTGTGGTATCGA
TGCCGAGGGGAAGTCATGGGGTTGGCCATGAGCCGCAGCCTGGGGGACGA
CATCGCCCACCAGGCGGGCGTTTCCTCCGAGCCGGAGATCATGGAACATG
ATATCGATGCGAGCGACCAGTTCCTCATCCTGGCAACCGATGGAGTCTGG
GATGTCATGGATATCGCGCAAGCCGCTCAGATCGTACAGTTCCTCATCCT
GGCAACCGATGGAGTCTGGGATGTCATGGATATCGCGCAAGCCGCTCAGA
TCGTACAGGGCTACGCATCCCGGTGCCAAGGAAACGCTTGGGATCCTCAG
GGAGCGGCGGCTCTCCTCTCCCACACCGCGAGAAAGCGCTGGGAGGGGCT
ATCGGCCATAATCGACGACATCACGGCCATGGTGGTTCGACTCAACATCG
GCTACGCATCCCGGTGCCAAGGAAACGCTTGGGATCCTCAGGGAGCGGCG
GCTCTCCTCTCCCACACCGCGAGAAAGCGCTGGGAGGGGCTATCGGCCAT
AATCGACGACATCACGGCCATGGTGGTTCGACTCAACATC
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