mRNA_H-elongata_contig121985.1679.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: D8LND0_ECTSI (Replication factor C subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LND0_ECTSI) HSP 1 Score: 94.0 bits (232), Expect = 8.080e-21 Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query: 58 GLRKQLVIMDEVDGMGGSDRGGIHELILLIKKTKVPIIAICNDRQHPKIR 207
G RKQLV+MDEVDGMGGSDRGGI ELILLIKK++VPIIAICNDRQH KIR
Sbjct: 564 GFRKQLVVMDEVDGMGGSDRGGIQELILLIKKSRVPIIAICNDRQHQKIR 613
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: A0A0L0HA68_SPIPD (Replication factor C subunit 1 n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HA68_SPIPD) HSP 1 Score: 82.4 bits (202), Expect = 9.270e-17 Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 1
Query: 1 QVLSFSKEGTSGGGSSGCGGLR---KQLVIMDEVDGMGGSDRGGIHELILLIKKTKVPIIAICNDRQHPKIR 207
+ S S+ G++ GGLR +Q+++MDEVDGM G DRGG ELI LIKKTKVPII ICNDRQ PKI+
Sbjct: 557 EFFSSSENGSTNSNGKKTGGLRTGKRQVLVMDEVDGMSGGDRGGTAELIQLIKKTKVPIICICNDRQSPKIK 628
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: T0RT30_SAPDV (Replication factor C subunit 1 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RT30_SAPDV) HSP 1 Score: 81.3 bits (199), Expect = 2.350e-16 Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 1
Query: 1 QVLSFSKEGTSGGGSSGCGGLRKQLVIMDEVDGMGGSDRGGIHELILLIKKTKVPIIAICNDRQHPKIR 207
Q LSF GGS+ GL+K+L++MDEVDGM DRGG+ ELI +IKK+K PI+ ICNDRQ PK+R
Sbjct: 361 QALSF-------GGSATKMGLKKRLIVMDEVDGMSSGDRGGMAELIAIIKKSKTPIVCICNDRQSPKVR 422
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: A0A507ETD7_9FUNG (BRCT domain-containing protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507ETD7_9FUNG) HSP 1 Score: 81.3 bits (199), Expect = 2.370e-16 Identity = 42/72 (58.33%), Postives = 50/72 (69.44%), Query Frame = 1
Query: 1 QVLSFSKEGTSGGGSSGCGGLR---KQLVIMDEVDGMGGSDRGGIHELILLIKKTKVPIIAICNDRQHPKIR 207
+ S S+ G+ GGLR +Q+++MDEVDGM G DRGG ELI LIKKTKVPII ICNDRQ PKI+
Sbjct: 895 EFFSSSENGSINSNGKKAGGLRTGKRQVLVMDEVDGMSGGDRGGSAELIQLIKKTKVPIICICNDRQSPKIK 966
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: A0A1E1X5R4_9ACAR (Replication factor C subunit 1 (Fragment) n=1 Tax=Amblyomma aureolatum TaxID=187763 RepID=A0A1E1X5R4_9ACAR) HSP 1 Score: 80.9 bits (198), Expect = 3.200e-16 Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1
Query: 43 SSGCGGLRKQLVIMDEVDGMGGS-DRGGIHELILLIKKTKVPIIAICNDRQHPKIR 207
SSGCG K ++IMDEVDGM G+ DRGG+ ELI LIK T++PII ICNDR HPK+R
Sbjct: 276 SSGCGMTSKHVLIMDEVDGMAGNEDRGGVQELIALIKTTRIPIICICNDRSHPKMR 331
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: A0A1Y2GD29_9FUNG (Replication factor C subunit 1 n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GD29_9FUNG) HSP 1 Score: 80.5 bits (197), Expect = 4.410e-16 Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 1
Query: 64 RKQLVIMDEVDGMGGSDRGGIHELILLIKKTKVPIIAICNDRQHPKIR 207
+KQL+IMDEVDGM G DRGGI +LI IKKT+VPII ICNDRQ PK+R
Sbjct: 585 KKQLIIMDEVDGMAGGDRGGIAQLISFIKKTRVPIICICNDRQSPKVR 632
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: A0A2K6GMT7_PROCO (Replication factor C subunit 1 n=6 Tax=Lemuriformes TaxID=376915 RepID=A0A2K6GMT7_PROCO) HSP 1 Score: 80.1 bits (196), Expect = 6.030e-16 Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 1
Query: 40 GSSGCGGLRKQLVIMDEVDGMGGS-DRGGIHELILLIKKTKVPIIAICNDRQHPKIR 207
G + C G K ++IMDEVDGM GS DRGGI ELI LIK TK+PII +CNDR HPKIR
Sbjct: 674 GGAACSGSTKHVLIMDEVDGMAGSEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIR 730
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: A0A1S3EKN1_DIPOR (Replication factor C subunit 1 n=6 Tax=Heteromyidae TaxID=10015 RepID=A0A1S3EKN1_DIPOR) HSP 1 Score: 79.7 bits (195), Expect = 8.240e-16 Identity = 40/60 (66.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query: 31 SGGGSSGCGGLRKQLVIMDEVDGMGGS-DRGGIHELILLIKKTKVPIIAICNDRQHPKIR 207
SGG G G K +IMDEVDGM G+ DRGGI ELI LIK TK+PII +CNDR HPKIR
Sbjct: 707 SGGSGGGASGSTKHALIMDEVDGMAGTEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIR 766
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: A0A197K2W2_9FUNG (Replication factor C subunit 1 n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197K2W2_9FUNG) HSP 1 Score: 79.3 bits (194), Expect = 1.120e-15 Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1
Query: 64 RKQLVIMDEVDGMGGSDRGGIHELILLIKKTKVPIIAICNDRQHPKIR 207
+KQL+IMDEVDGM G DRGG+ ++I IKKT+VPII ICNDRQ PK+R
Sbjct: 556 KKQLIIMDEVDGMAGGDRGGVAQMIAFIKKTQVPIICICNDRQSPKVR 603
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Match: UPI0018A7B502 (replication factor C subunit 1-like n=1 Tax=Penaeus monodon TaxID=6687 RepID=UPI0018A7B502) HSP 1 Score: 73.9 bits (180), Expect = 1.500e-15 Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 1
Query: 67 KQLVIMDEVDGMGGS-DRGGIHELILLIKKTKVPIIAICNDRQHPKIR 207
K ++MDEVDGM G+ DRGG+ ELI LIKK+K+PII +CNDR HPKIR
Sbjct: 52 KHALVMDEVDGMSGNEDRGGVQELITLIKKSKIPIITMCNDRNHPKIR 99 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121985.1679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig121985.1679.1 >prot_H-elongata_contig121985.1679.1 ID=prot_H-elongata_contig121985.1679.1|Name=mRNA_H-elongata_contig121985.1679.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp QVLSFSKEGTSGGGSSGCGGLRKQLVIMDEVDGMGGSDRGGIHELILLIKback to top mRNA from alignment at H-elongata_contig121985:206..412+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig121985.1679.1 ID=mRNA_H-elongata_contig121985.1679.1|Name=mRNA_H-elongata_contig121985.1679.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig121985:206..412+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig121985:206..412+ >mRNA_H-elongata_contig121985.1679.1 ID=mRNA_H-elongata_contig121985.1679.1|Name=mRNA_H-elongata_contig121985.1679.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig121985:206..412+ (Himanthalia elongata Himel1 dioecious)back to top |