mRNA_H-elongata_contig93152.16768.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93152.16768.1
Unique NamemRNA_H-elongata_contig93152.16768.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig93152.16768.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 2.170e-39
Identity = 66/106 (62.26%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    1 VVKLDGYTGPQWLDEDLYRNCIPIAPVETFWSAPGQDHEGGAMTTLQLPLKLYWAITMHKSQGQTLSKAVIGLGEKEAYNGLTFVCLSRAKTLTDLLVEPMPFDRL 318
            VVK +GY+G +W  ++ YR C+PI+PV+T W       +GG     QLPL+L WAITMHKSQGQTL+KAVI LG KEA  GLTFVCLSRAK L DL+VEPM FDR+
Sbjct:  148 VVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRI 247
[Close]
BLAST of mRNA_H-elongata_contig93152.16768.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 6.450e-38
Identity = 66/106 (62.26%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    1 VVKLDGYTGPQWLDEDLYRNCIPIAPVETFWSAPGQDHEGGAMTTLQLPLKLYWAITMHKSQGQTLSKAVIGLGEKEAYNGLTFVCLSRAKTLTDLLVEPMPFDRL 318
            VVK +GY+G +W  ++ YR C+PI+PV+T W       +GG     QLPL+L WAITMHKSQGQTL+KAVI LG KEA  GLTFVCLSRAK L DL+VEPM FDR+
Sbjct:  322 VVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRI 421
[Close]
BLAST of mRNA_H-elongata_contig93152.16768.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 8.450e-38
Identity = 66/106 (62.26%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    1 VVKLDGYTGPQWLDEDLYRNCIPIAPVETFWSAPGQDHEGGAMTTLQLPLKLYWAITMHKSQGQTLSKAVIGLGEKEAYNGLTFVCLSRAKTLTDLLVEPMPFDRL 318
            VVK +GY+G +W  ++ YR C+PI+PV+T W       +GG     QLPL+L WAITMHKSQGQTL+KAVI LG KEA  GLTFVCLSRAK L DL+VEPM FDR+
Sbjct:   39 VVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRI 138
[Close]
BLAST of mRNA_H-elongata_contig93152.16768.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 7.440e-37
Identity = 66/106 (62.26%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    1 VVKLDGYTGPQWLDEDLYRNCIPIAPVETFWSAPGQDHEGGAMTTLQLPLKLYWAITMHKSQGQTLSKAVIGLGEKEAYNGLTFVCLSRAKTLTDLLVEPMPFDRL 318
            VVK +GY+G +W  ++ YR C+PI+PV+T W       +GG     QLPL+L WAITMHKSQGQTL+KAVI LG KEA  GLTFVCLSRAK L DL+VEPM FDR+
Sbjct: 1453 VVKFEGYSGGEWSSQERYRRCVPISPVDTTWQ------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRI 1552
[Close]
BLAST of mRNA_H-elongata_contig93152.16768.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.000e-26
Identity = 50/71 (70.42%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:  106 QDHEGGAMTTLQLPLKLYWAITMHKSQGQTLSKAVIGLGEKEAYNGLTFVCLSRAKTLTDLLVEPMPFDRL 318
            +  +GG     QLPL+L WAITMHKSQGQTL+KAVI LG KEA  GLTFVCLSRAK L DL+VEPM FDR+
Sbjct:    6 KGEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRI 76
[Close]
BLAST of mRNA_H-elongata_contig93152.16768.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 3.910e-26
Identity = 53/76 (69.74%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:   91 WSAPGQDHEGGAMTTLQLPLKLYWAITMHKSQGQTLSKAVIGLGEKEAYNGLTFVCLSRAKTLTDLLVEPMPFDRL 318
            WS   +D  GG     QLPL+L WAITMHKSQGQTL+KAVI LG KEA  GLTFVCLSRAK L DL+VEPM FDR+
Sbjct:   67 WSTGRKD--GGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRI 140
[Close]
BLAST of mRNA_H-elongata_contig93152.16768.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 7.110e-26
Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:  103 GQDHEGGAMTTLQLPLKLYWAITMHKSQGQTLSKAVIGLGEKEAYNGLTFVCLSRAKTLTDLLVEPMPFDRL 318
            G+D  GG     QLPL+L WAITMHKSQGQTL+KAVI LG KEA  GLTFVCLSRAK L DL+VEPM FDR+
Sbjct:    5 GED--GGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRI 74
[Close]
BLAST of mRNA_H-elongata_contig93152.16768.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.530e-25
Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:  103 GQDHEGGAMTTLQLPLKLYWAITMHKSQGQTLSKAVIGLGEKEAYNGLTFVCLSRAKTLTDLLVEPMPFDRL 318
            G+D  GG     QLPL+L WAITMHKSQGQTL+KAVI LG KEA  GLTFVCLSRAK L DL+VEPM FDR+
Sbjct:    5 GED--GGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRI 74
[Close]
BLAST of mRNA_H-elongata_contig93152.16768.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.970e-25
Identity = 50/68 (73.53%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:  115 EGGAMTTLQLPLKLYWAITMHKSQGQTLSKAVIGLGEKEAYNGLTFVCLSRAKTLTDLLVEPMPFDRL 318
            +GG     QLPL+L WAITMHKSQGQTL+KAVI LG KEA  GLTFVCLSRAK L DL+VEPM FDR+
Sbjct:    4 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPMSFDRI 71
[Close]
BLAST of mRNA_H-elongata_contig93152.16768.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.960e-24
Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:  103 GQDHEGGAMTTLQLPLKLYWAITMHKSQGQTLSKAVIGLGEKEAYNGLTFVCLSRAKTLTDLLVEPMPFDRL 318
            G+D  GG     QLPL+L WAITMHKSQGQTL+KAVI LG KEA  GLTFVCLSRAK L DL+VEPM FDR+
Sbjct:    5 GED--GGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRI 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93152.16768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUS2_9PHAE2.170e-3962.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG8_9PHAE6.450e-3862.26Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4U7_9PHAE8.450e-3862.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L976_9PHAE7.440e-3762.26ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
A0A6H5KSF1_9PHAE2.000e-2670.42Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMH2_9PHAE3.910e-2669.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFN2_9PHAE7.110e-2672.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCP5_9PHAE1.530e-2572.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K214_9PHAE2.970e-2573.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN08_9PHAE1.960e-2472.22Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93152contigH-elongata_contig93152:348..671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score94.4
Seed ortholog evalue3.6e-17
Seed eggNOG ortholog400682.PAC_15699109
EggNOG free text desc.Helicase
EggNOG OGs39K8F@33154,3C3GY@33208,COG0507@1,KOG0987@2759
COG Functional cat.D
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931329.3029528-CDS-H-elongata_contig93152:347..6711622931329.3029528-CDS-H-elongata_contig93152:347..671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93152 348..671 -
1691679792.347354-CDS-H-elongata_contig93152:347..6711691679792.347354-CDS-H-elongata_contig93152:347..671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93152 348..671 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93152.16768.1prot_H-elongata_contig93152.16768.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93152 348..671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93152.16768.1

>prot_H-elongata_contig93152.16768.1 ID=prot_H-elongata_contig93152.16768.1|Name=mRNA_H-elongata_contig93152.16768.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
VVKLDGYTGPQWLDEDLYRNCIPIAPVETFWSAPGQDHEGGAMTTLQLPL
KLYWAITMHKSQGQTLSKAVIGLGEKEAYNGLTFVCLSRAKTLTDLLVEP
MPFDRLSR
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mRNA from alignment at H-elongata_contig93152:348..671-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93152.16768.1 ID=mRNA_H-elongata_contig93152.16768.1|Name=mRNA_H-elongata_contig93152.16768.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig93152:348..671- (Himanthalia elongata Himel1 dioecious)
GTAGTGAAACTGGACGGCTATACAGGACCACAGTGGTTGGACGAGGATCT
GTATCGAAATTGTATTCCAATCGCTCCCGTTGAGACCTTCTGGTCTGCAC
CAGGCCAAGACCATGAAGGTGGTGCCATGACCACACTTCAGCTTCCACTT
AAGTTATACTGGGCTATCACCATGCACAAGAGTCAAGGCCAGACGTTGTC
AAAAGCCGTGATCGGTTTGGGGGAAAAGGAAGCGTACAATGGATTGACTT
TCGTCTGTTTGAGTCGTGCTAAGACGTTGACTGATTTGCTCGTAGAACCA
ATGCCGTTCGATCGTCTCTCAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig93152:348..671-

>mRNA_H-elongata_contig93152.16768.1 ID=mRNA_H-elongata_contig93152.16768.1|Name=mRNA_H-elongata_contig93152.16768.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig93152:348..671- (Himanthalia elongata Himel1 dioecious)
GTAGTGAAACTGGACGGCTATACAGGACCACAGTGGTTGGACGAGGATCT
GTATCGAAATTGTATTCCAATCGCTCCCGTTGAGACCTTCTGGTCTGCAC
CAGGCCAAGACCATGAAGGTGGTGCCATGACCACACTTCAGCTTCCACTT
AAGTTATACTGGGCTATCACCATGCACAAGAGTCAAGGCCAGACGTTGTC
AAAAGCCGTGATCGGTTTGGGGGAAAAGGAAGCGTACAATGGATTGACTT
TCGTCTGTTTGAGTCGTGCTAAGACGTTGACTGATTTGCTCGTAGAACCA
ATGCCGTTCGATCGTCTCTCAAGGGTAGTGAAACTGGACGGCTATACAGG
ACCACAGTGGTTGGACGAGGATCTGTATCGAAATTGTATTCCAATCGCTC
CCGTTGAGACCTTCTGGTCTGCACCAGGCCAAGACCATGAAGGTGGTGCC
ATGACCACACTTCAGCTTCCACTTAAGTTATACTGGGCTATCACCATGCA
CAAGAGTCAAGGCCAGACGTTGTCAAAAGCCGTGATCGGTTTGGGGGAAA
AGGAAGCGTACAATGGATTGACTTTCGTCTGTTTGAGTCGTGCTAAGACG
TTGACTGATTTGCTCGTAGAACCAATGCCGTTCGATCGTCTCTCAAGG
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