prot_H-elongata_contig93147.16766.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig93147.16766.1
Unique Nameprot_H-elongata_contig93147.16766.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length151
Homology
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BLAST of mRNA_H-elongata_contig93147.16766.1 vs. uniprot
Match: D8LIL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIL4_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 1.660e-65
Identity = 105/151 (69.54%), Postives = 118/151 (78.15%), Query Frame = 0 
Query:    1 RVFVRFGQAIGVIAWESLDDFPDARKIVMNANSAWPMFISVVFIPQCLMAFYLIGTPSLCEGVPARERVYWEEGGGYFRRGTLSAGISQAFPFSVDWRSMLDAVGEEGLVERLRGFACTRTPLLYFTRPYPSPRRTMSAVLLVGLVQYTQV 151
            RVFVRFGQAIGVIAWESLDDFPDARKIV +A S WPMFI +VFIPQCLMA  L+GTP LC+GV   ERV     GG F R     GISQAFPF + W+S L+A  ++GL +RL+ F C RTPLLY TRPYP+PRRTMSAVL+VGLVQY QV
Sbjct:  124 RVFVRFGQAIGVIAWESLDDFPDARKIVNHATSQWPMFIFIVFIPQCLMALSLVGTPWLCKGVAVPERV-----GGVFHR---DPGISQAFPFHLKWQSFLEAARQDGLADRLQSFVCVRTPLLYLTRPYPNPRRTMSAVLVVGLVQYVQV 266
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93147.16766.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIL4_ECTSI1.660e-6569.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 55..151
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 34..54
NoneNo IPR availableTMHMMTMhelixcoord: 34..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93147contigH-elongata_contig93147:898..2268 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93147.16766.1mRNA_H-elongata_contig93147.16766.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig93147 898..2268 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig93147.16766.1 ID=prot_H-elongata_contig93147.16766.1|Name=mRNA_H-elongata_contig93147.16766.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=151bp
RVFVRFGQAIGVIAWESLDDFPDARKIVMNANSAWPMFISVVFIPQCLMA
FYLIGTPSLCEGVPARERVYWEEGGGYFRRGTLSAGISQAFPFSVDWRSM
LDAVGEEGLVERLRGFACTRTPLLYFTRPYPSPRRTMSAVLLVGLVQYTQ
V
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