mRNA_H-elongata_contig93136.16764.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig93136.16764.1 vs. uniprot
Match: D7G0B4_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0B4_ECTSI) HSP 1 Score: 279 bits (714), Expect = 9.980e-90 Identity = 126/197 (63.96%), Postives = 153/197 (77.66%), Query Frame = 1
Query: 1 AHCGLMSLIDYAGWGVWISAALVRVYRSWKILVRHSVDMWPAWRQVALLSIPFLIPAVAYTIDEELAPYNERSNWCETFDPIHAALYFYGCVPVASAFGLVYQMRRVRKQMNEYRMQALQLLFLLIMGGTVFPLQKTVFLSNHSIRRIWAMYHNVVCSVILFWPPIAEPLYRYIRGDEDYLYSYTKGFSTLPTPSQV 591
AHCGL ++ Y WGVWIS ALVRVYRSWKIL++HSV+MWP W QV LL++P+ IPAVAYTID+ L+ +NE NWCE + PI Y G +ASAF LVYQMR+VRKQMNEYR+Q QL FLL+ G VFPLQ + + H IRRIW +YHN + S++LFWPPIAEP+YRY+ GD DYL SYT+GFSTLPTP+Q+
Sbjct: 29 AHCGLDAVFHYTTWGVWISVALVRVYRSWKILIKHSVEMWPPWAQVLLLTVPWCIPAVAYTIDDHLSRFNEVRNWCEIYRPIDTFTYILGSSLIASAFVLVYQMRKVRKQMNEYRLQVFQLAFLLLTGSVVFPLQHLLLDNKHGIRRIWVLYHNFLDSLVLFWPPIAEPMYRYLTGDVDYLNSYTQGFSTLPTPAQM 225
BLAST of mRNA_H-elongata_contig93136.16764.1 vs. uniprot
Match: A0A6H5K1F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F7_9PHAE) HSP 1 Score: 281 bits (719), Expect = 7.130e-87 Identity = 126/197 (63.96%), Postives = 152/197 (77.16%), Query Frame = 1
Query: 1 AHCGLMSLIDYAGWGVWISAALVRVYRSWKILVRHSVDMWPAWRQVALLSIPFLIPAVAYTIDEELAPYNERSNWCETFDPIHAALYFYGCVPVASAFGLVYQMRRVRKQMNEYRMQALQLLFLLIMGGTVFPLQKTVFLSNHSIRRIWAMYHNVVCSVILFWPPIAEPLYRYIRGDEDYLYSYTKGFSTLPTPSQV 591
AHCG +L YA WGVWIS ALVRVYRSWKILV+HSVDMW W QVALL++P+ PAV YT DE+LAP+NE NWCE++ P+ + Y + +A AF LVYQMR+VRKQMNEY +Q QL FLL+ G VFPLQ + H IRRIW +YHN+ S++LFWPPIAEP+YRY+ GDE+YL+SYT GFSTLPTP+QV
Sbjct: 392 AHCGFDALFQYATWGVWISVALVRVYRSWKILVKHSVDMWRPWAQVALLTLPWCFPAVVYTTDEDLAPFNETRNWCESYRPVQSFTYVLDGLLIAGAFVLVYQMRKVRKQMNEYHLQVFQLTFLLVTGTVVFPLQHAILDHRHEIRRIWVLYHNLFDSLVLFWPPIAEPMYRYLTGDEEYLHSYTHGFSTLPTPAQV 588
BLAST of mRNA_H-elongata_contig93136.16764.1 vs. uniprot
Match: D7G7J3_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J3_ECTSI) HSP 1 Score: 271 bits (694), Expect = 3.850e-83 Identity = 130/197 (65.99%), Postives = 148/197 (75.13%), Query Frame = 1
Query: 1 AHCGLMSLIDYAGWGVWISAALVRVYRSWKILVRHSVDMWPAWRQVALLSIPFLIPAVAYTIDEELAPYNERSNWCETFDPIHAALYFYGCVPVASAFGLVYQMRRVRKQMNEYRMQALQLLFLLIMGGTVFPLQKTVFLSNHSIRRIWAMYHNVVCSVILFWPPIAEPLYRYIRGDEDYLYSYTKGFSTLPTPSQV 591
A+C + L DY GWGVW S ALVRVYRSWKIL RHSVDMWPAW QVALLSIP+L+P VAY+I L+ +NE NWC+ I ALY YG VP+ AF L +QMRRVRKQMN YRMQ LQLLFL + G +FPL + SN IRR W MY N+V S+ILFWPPI EPLYR + GDEDYLYSYTKGFS LPTP+Q+
Sbjct: 59 ANCAVEGLFDYTGWGVWTSVALVRVYRSWKILCRHSVDMWPAWAQVALLSIPWLVPVVAYSIKPSLSEFNELGNWCDINVAIDTALYVYGGVPIIGAFFLSFQMRRVRKQMNFYRMQVLQLLFLFVTGTIIFPLLEESLHSN--IRRTWIMYDNIVSSIILFWPPIIEPLYRKLSGDEDYLYSYTKGFSQLPTPAQM 253
BLAST of mRNA_H-elongata_contig93136.16764.1 vs. uniprot
Match: D8LI44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI44_ECTSI) HSP 1 Score: 144 bits (364), Expect = 2.000e-40 Identity = 65/116 (56.03%), Postives = 81/116 (69.83%), Query Frame = 1
Query: 115 MWPAWRQVALLSIPFLIPAVAYTIDEELAPYNERSNWCETFDPIHAALYFYGCVPVASAFGLVYQMRRVRKQMNEYRMQALQLLFLLIMGGTVFPLQKTVFLSNHSIRRIWAMYHN 462
MW W QVALL++P+ PAV YT DE+LAP+NE NWCE++ P+ + Y + +A AF LVYQMR+VRKQMNEY +Q QL FLL+ G VFPLQ + H IRRIW +YHN
Sbjct: 1 MWRPWAQVALLTVPWCFPAVVYTADEDLAPFNETRNWCESYRPVESFTYVLDGLLIAGAFVLVYQMRKVRKQMNEYHLQVFQLTFLLVTGTVVFPLQHAILDHRHEIRRIWVLYHN 116
BLAST of mRNA_H-elongata_contig93136.16764.1 vs. uniprot
Match: D7G9A7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A7_ECTSI) HSP 1 Score: 135 bits (340), Expect = 3.020e-33 Identity = 73/199 (36.68%), Postives = 114/199 (57.29%), Query Frame = 1
Query: 1 AHCGLMSLIDYAGWGVWISAALVRVYRSWKILVRHSVDMWPAWRQVALLSIPFLIPAVAYTIDEELAPYNERSNWCETFDPIHAALYFYGCVPVASAFGLVYQMR--RVRKQMNEYRMQALQLLFLLIMGGTVFPLQKTVFLSNHSIRRIWAMYHNVVCSVILFWPPIAEPLYRYIRGDEDYLYSYTKGFSTLPTPSQV 591
A CG+ +L+ G + A VRVYR+ K+LVRHS MW Q+ L+S+PFL+PA+ YT+D LA + + N C I+ A++ + V+ LV +++ RVRKQ+N+ + L FLL+ + P + + S R AM ++V + +LFW P+ PL +Y++ D Y+ +T GFS LPTP+Q+
Sbjct: 73 ARCGVEALLTSLGMALLFFPACVRVYRNHKVLVRHSASMWTPMAQLQLVSLPFLVPAITYTLDPPLADFEDYRNRCIGNTGINLAVFTFMAAAVSVGTVLVSRIKAKRVRKQLNDDTVMMTSLAFLLVWVLYLIPTGHWFWDDSPSAARRLAMVDSIVSTAVLFWYPVFVPLLKYLQQDYAYISQFTFGFSKLPTPAQI 271
BLAST of mRNA_H-elongata_contig93136.16764.1 vs. uniprot
Match: D7FTZ6_ECTSI (Similar to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ6_ECTSI) HSP 1 Score: 103 bits (256), Expect = 1.640e-22 Identity = 64/201 (31.84%), Postives = 104/201 (51.74%), Query Frame = 1
Query: 1 AHCGLMSLIDYAGWGVWISAALVRVYRSWKILVRHSVDMWPAWRQVALLSIPFLIPAVAYTIDEELAPYNERSNWCETFDP---IHAALYFYGCVPVASA-FGLVYQMRRVRKQMNEYRMQALQLLFLLIMGGTVFPLQKTVFLSNHSIRRIWAMYHNVVCSVILFWPPIAEPLYRYIRGDEDYLYSYTKGFSTLPTPSQV 591
A C + + + ++ V I + VRVYR W+IL++H MWPA QV ++S L P +A + +L ++E N C T + A+ G + F Q+R VRKQ NEY L L ++ + + + + H + R A+ + V+ + L W + EP+ + GDE YL+S+TKGFS +P+P+Q+
Sbjct: 66 AICYIDTTLSWSTLAVHIMSFAVRVYRMWRILIKHDDSMWPAKYQVMVMSSISLGPLLAAVLVPDLHFFDETVNSCNTTTDSRNVVLAMNALGFYLICYLWFVCTRQLRWVRKQFNEYEAMKWTLSCLTLLLFSYAAVVAIILNNQHVLVRRVAIVYPVLSTYTLLWGSVGEPVVKKFTGDEGYLWSFTKGFSEMPSPAQL 266
BLAST of mRNA_H-elongata_contig93136.16764.1 vs. uniprot
Match: A0A6H5KAT5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT5_9PHAE) HSP 1 Score: 100 bits (248), Expect = 5.950e-21 Identity = 63/201 (31.34%), Postives = 100/201 (49.75%), Query Frame = 1
Query: 1 AHCGLMSLIDYAGWGVWISAALVRVYRSWKILVRHSVDMWPAWRQVALLSIPFLIPAVAYTIDEELAPYNERSNWCET--FDPIHA-ALYFYGCVPVASA-FGLVYQMRRVRKQMNEYRMQALQLLFLLIMGGTVFPLQKTVFLSNHSIRRIWAMYHNVVCSVILFWPPIAEPLYRYIRGDEDYLYSYTKGFSTLPTPSQV 591
A C + ++ V A +RVYR W+IL++H MW Q+ +S LIP VA ++E +N C T F I + G + + F Q++ VRKQ NEY LL++ I + + + N + R ++++ ++ + IL W I EP I GD++YL+SYTKGF+ LP+P+Q+
Sbjct: 72 AACDFERFLSWSTLCVHTVAFFIRVYRMWRILIKHDDQMWHTGHQILFMSSLSLIPVVATWAVPHTGYFDEVANTCSTTTFSTIVVLGMDALGFLAICYLWFVCARQLKWVRKQFNEYETMKRTLLYMTITLASYGVIVVYLLADNLVLGRRVSVFYPLLTTYILLWGSIREPFMMKILGDDEYLWSYTKGFAQLPSPAQL 272
BLAST of mRNA_H-elongata_contig93136.16764.1 vs. uniprot
Match: D7FTZ9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ9_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 2.550e-20 Identity = 68/207 (32.85%), Postives = 103/207 (49.76%), Query Frame = 1
Query: 1 AHCGLMSLIDYAGWGVWISAALVRVYRSWKILVRHSVDMWPAWRQVALLSIPFLIPAVAYTIDEELAPYNERSNWCETFDPIHA------ALYFYGCVPVASAFGLVYQMRRVRKQMNEYRM--QALQLLFLLIMGGTVFPLQKTVFLSN--HSIRRIWAMYHNVVCSVILFWPPIAEPLYRYIRGDEDYLYSYTKGFSTLPTPSQV 591
A C L L+ ++ + + A +RVY W+I+VRH D+ Q+ LLS L+P + + ++E N C T A+ FY + G Q+RRVRKQ NEY L L LL++ TV + L N H + R A+ + V+ + L W I EPL + GD +YL+S+T+GFS +P+P+Q+
Sbjct: 82 AECSLEKLLTWSTLCIHMFAFFIRVYLMWRIMVRHDEDVGSPKGQIFLLSSISLVPPLIALLVPGAYVFDETINSCNTTSTSRTVGLGMNAVGFYTICFLWFVCGR--QLRRVRKQFNEYEAIKWTLSCLILLVLSYTVGV---NIILDNKHHVLARRLAIVYPVLTTHTLLWGSIGEPLLKKWEGDREYLWSFTRGFSEMPSPAQL 283
BLAST of mRNA_H-elongata_contig93136.16764.1 vs. uniprot
Match: A0A6H5JMI3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI3_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 2.820e-20 Identity = 58/199 (29.15%), Postives = 109/199 (54.77%), Query Frame = 1
Query: 1 AHCGLMSLIDYAGWGVWISAALVRVYRSWKILVRHSVDMWPAWRQVALLSIPFLIPAVAYTIDEELAPYNERSNWCE--TFDPIHAALYFYGCVPVASAFGLVYQMRRVRKQMNEYRMQALQLLFLLIMGGTVFPLQKTVFLSNHSIRRIWAMYHNVVCSVILFWPPIAEPLYRYIRGDEDYLYSYTKGFSTLPTPSQV 591
++C ++ G G++ + A+VRVYR++K+L+ H+VDM P Q+ ++ P + A+ + + +A ++ +N C+ + A + G + + S + L+++MR R+QM EYR + L+ LL+M V + + RRI A+ +N+V ++LFWP I PL +Y + D+ Y ++ G TP+ +
Sbjct: 79 SNCFFQGVLVSTGAGLYFAGAVVRVYRNYKVLMLHTVDMLPPTVQILIVQAPMWVAAM-FLLIPSVASFDFEANRCKGNARHVLLGAFNYAGLLVIGSVY-LLWKMRDARRQMTEYRAMMVSLVSLLVMLAAVNLTAGKIAEDDTLTRRI-ALLNNMVRGLLLFWPVIFTPLCKYAKRDQRYAERFSAGMRPSITPAML 274
BLAST of mRNA_H-elongata_contig93136.16764.1 vs. uniprot
Match: A0A6H5L5B5_9PHAE (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5B5_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 8.590e-20 Identity = 56/166 (33.73%), Postives = 87/166 (52.41%), Query Frame = 1
Query: 1 AHCGLMSLIDYAGWGVWISAALVRVYRSWKILVRHSVDMWPAWRQVALLSIPFLIPAVAYTIDEELAPYNERSNWCETFDPIHAALYFYGCVPVASAFGLVYQMR--RVRKQMNEYRMQALQLLFLLIMGGTVFPLQKTVFLSNHSIRRIWAMYHNVVCSVILFWP 492
A CG+ +L+ G + A VRVYR+ +LVRHS MW Q+ L+S+PFL+PA+ YT+D LA + + N C I+ A++ + V+ LV +++ RVRKQ+N+ + + FLL+ + P + N S R AM ++V L P
Sbjct: 73 ARCGVEALLTLLGMALLFFPAFVRVYRNHMVLVRHSASMWAPMAQLQLVSLPFLVPAITYTLDPSLAEFEDYRNRCIGNTGINLAVFTFMAAAVSVGTVLVARIKAKRVRKQLNDDTVMMTSVAFLLVWVLYLIPTGHWFWDDNPSATRRLAMVDSIVVRTRLAVP 238 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93136.16764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig93136.16764.1 >prot_H-elongata_contig93136.16764.1 ID=prot_H-elongata_contig93136.16764.1|Name=mRNA_H-elongata_contig93136.16764.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=192bp MSLIDYAGWGVWISAALVRVYRSWKILVRHSVDMWPAWRQVALLSIPFLIback to top mRNA from alignment at H-elongata_contig93136:163..2409+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig93136.16764.1 ID=mRNA_H-elongata_contig93136.16764.1|Name=mRNA_H-elongata_contig93136.16764.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2247bp|location=Sequence derived from alignment at H-elongata_contig93136:163..2409+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig93136:163..2409+ >mRNA_H-elongata_contig93136.16764.1 ID=mRNA_H-elongata_contig93136.16764.1|Name=mRNA_H-elongata_contig93136.16764.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1152bp|location=Sequence derived from alignment at H-elongata_contig93136:163..2409+ (Himanthalia elongata Himel1 dioecious)back to top |