mRNA_H-elongata_contig93136.16764.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93136.16764.1
Unique NamemRNA_H-elongata_contig93136.16764.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig93136.16764.1 vs. uniprot
Match: D7G0B4_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0B4_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 9.980e-90
Identity = 126/197 (63.96%), Postives = 153/197 (77.66%), Query Frame = 1
Query:    1 AHCGLMSLIDYAGWGVWISAALVRVYRSWKILVRHSVDMWPAWRQVALLSIPFLIPAVAYTIDEELAPYNERSNWCETFDPIHAALYFYGCVPVASAFGLVYQMRRVRKQMNEYRMQALQLLFLLIMGGTVFPLQKTVFLSNHSIRRIWAMYHNVVCSVILFWPPIAEPLYRYIRGDEDYLYSYTKGFSTLPTPSQV 591
            AHCGL ++  Y  WGVWIS ALVRVYRSWKIL++HSV+MWP W QV LL++P+ IPAVAYTID+ L+ +NE  NWCE + PI    Y  G   +ASAF LVYQMR+VRKQMNEYR+Q  QL FLL+ G  VFPLQ  +  + H IRRIW +YHN + S++LFWPPIAEP+YRY+ GD DYL SYT+GFSTLPTP+Q+
Sbjct:   29 AHCGLDAVFHYTTWGVWISVALVRVYRSWKILIKHSVEMWPPWAQVLLLTVPWCIPAVAYTIDDHLSRFNEVRNWCEIYRPIDTFTYILGSSLIASAFVLVYQMRKVRKQMNEYRLQVFQLAFLLLTGSVVFPLQHLLLDNKHGIRRIWVLYHNFLDSLVLFWPPIAEPMYRYLTGDVDYLNSYTQGFSTLPTPAQM 225          
BLAST of mRNA_H-elongata_contig93136.16764.1 vs. uniprot
Match: A0A6H5K1F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F7_9PHAE)

HSP 1 Score: 281 bits (719), Expect = 7.130e-87
Identity = 126/197 (63.96%), Postives = 152/197 (77.16%), Query Frame = 1
Query:    1 AHCGLMSLIDYAGWGVWISAALVRVYRSWKILVRHSVDMWPAWRQVALLSIPFLIPAVAYTIDEELAPYNERSNWCETFDPIHAALYFYGCVPVASAFGLVYQMRRVRKQMNEYRMQALQLLFLLIMGGTVFPLQKTVFLSNHSIRRIWAMYHNVVCSVILFWPPIAEPLYRYIRGDEDYLYSYTKGFSTLPTPSQV 591
            AHCG  +L  YA WGVWIS ALVRVYRSWKILV+HSVDMW  W QVALL++P+  PAV YT DE+LAP+NE  NWCE++ P+ +  Y    + +A AF LVYQMR+VRKQMNEY +Q  QL FLL+ G  VFPLQ  +    H IRRIW +YHN+  S++LFWPPIAEP+YRY+ GDE+YL+SYT GFSTLPTP+QV
Sbjct:  392 AHCGFDALFQYATWGVWISVALVRVYRSWKILVKHSVDMWRPWAQVALLTLPWCFPAVVYTTDEDLAPFNETRNWCESYRPVQSFTYVLDGLLIAGAFVLVYQMRKVRKQMNEYHLQVFQLTFLLVTGTVVFPLQHAILDHRHEIRRIWVLYHNLFDSLVLFWPPIAEPMYRYLTGDEEYLHSYTHGFSTLPTPAQV 588          
BLAST of mRNA_H-elongata_contig93136.16764.1 vs. uniprot
Match: D7G7J3_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J3_ECTSI)

HSP 1 Score: 271 bits (694), Expect = 3.850e-83
Identity = 130/197 (65.99%), Postives = 148/197 (75.13%), Query Frame = 1
Query:    1 AHCGLMSLIDYAGWGVWISAALVRVYRSWKILVRHSVDMWPAWRQVALLSIPFLIPAVAYTIDEELAPYNERSNWCETFDPIHAALYFYGCVPVASAFGLVYQMRRVRKQMNEYRMQALQLLFLLIMGGTVFPLQKTVFLSNHSIRRIWAMYHNVVCSVILFWPPIAEPLYRYIRGDEDYLYSYTKGFSTLPTPSQV 591
            A+C +  L DY GWGVW S ALVRVYRSWKIL RHSVDMWPAW QVALLSIP+L+P VAY+I   L+ +NE  NWC+    I  ALY YG VP+  AF L +QMRRVRKQMN YRMQ LQLLFL + G  +FPL +    SN  IRR W MY N+V S+ILFWPPI EPLYR + GDEDYLYSYTKGFS LPTP+Q+
Sbjct:   59 ANCAVEGLFDYTGWGVWTSVALVRVYRSWKILCRHSVDMWPAWAQVALLSIPWLVPVVAYSIKPSLSEFNELGNWCDINVAIDTALYVYGGVPIIGAFFLSFQMRRVRKQMNFYRMQVLQLLFLFVTGTIIFPLLEESLHSN--IRRTWIMYDNIVSSIILFWPPIIEPLYRKLSGDEDYLYSYTKGFSQLPTPAQM 253          
BLAST of mRNA_H-elongata_contig93136.16764.1 vs. uniprot
Match: D8LI44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI44_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 2.000e-40
Identity = 65/116 (56.03%), Postives = 81/116 (69.83%), Query Frame = 1
Query:  115 MWPAWRQVALLSIPFLIPAVAYTIDEELAPYNERSNWCETFDPIHAALYFYGCVPVASAFGLVYQMRRVRKQMNEYRMQALQLLFLLIMGGTVFPLQKTVFLSNHSIRRIWAMYHN 462
            MW  W QVALL++P+  PAV YT DE+LAP+NE  NWCE++ P+ +  Y    + +A AF LVYQMR+VRKQMNEY +Q  QL FLL+ G  VFPLQ  +    H IRRIW +YHN
Sbjct:    1 MWRPWAQVALLTVPWCFPAVVYTADEDLAPFNETRNWCESYRPVESFTYVLDGLLIAGAFVLVYQMRKVRKQMNEYHLQVFQLTFLLVTGTVVFPLQHAILDHRHEIRRIWVLYHN 116          
BLAST of mRNA_H-elongata_contig93136.16764.1 vs. uniprot
Match: D7G9A7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A7_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 3.020e-33
Identity = 73/199 (36.68%), Postives = 114/199 (57.29%), Query Frame = 1
Query:    1 AHCGLMSLIDYAGWGVWISAALVRVYRSWKILVRHSVDMWPAWRQVALLSIPFLIPAVAYTIDEELAPYNERSNWCETFDPIHAALYFYGCVPVASAFGLVYQMR--RVRKQMNEYRMQALQLLFLLIMGGTVFPLQKTVFLSNHSIRRIWAMYHNVVCSVILFWPPIAEPLYRYIRGDEDYLYSYTKGFSTLPTPSQV 591
            A CG+ +L+   G  +    A VRVYR+ K+LVRHS  MW    Q+ L+S+PFL+PA+ YT+D  LA + +  N C     I+ A++ +    V+    LV +++  RVRKQ+N+  +    L FLL+    + P     +  + S  R  AM  ++V + +LFW P+  PL +Y++ D  Y+  +T GFS LPTP+Q+
Sbjct:   73 ARCGVEALLTSLGMALLFFPACVRVYRNHKVLVRHSASMWTPMAQLQLVSLPFLVPAITYTLDPPLADFEDYRNRCIGNTGINLAVFTFMAAAVSVGTVLVSRIKAKRVRKQLNDDTVMMTSLAFLLVWVLYLIPTGHWFWDDSPSAARRLAMVDSIVSTAVLFWYPVFVPLLKYLQQDYAYISQFTFGFSKLPTPAQI 271          
BLAST of mRNA_H-elongata_contig93136.16764.1 vs. uniprot
Match: D7FTZ6_ECTSI (Similar to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ6_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.640e-22
Identity = 64/201 (31.84%), Postives = 104/201 (51.74%), Query Frame = 1
Query:    1 AHCGLMSLIDYAGWGVWISAALVRVYRSWKILVRHSVDMWPAWRQVALLSIPFLIPAVAYTIDEELAPYNERSNWCETFDP---IHAALYFYGCVPVASA-FGLVYQMRRVRKQMNEYRMQALQLLFLLIMGGTVFPLQKTVFLSNHSIRRIWAMYHNVVCSVILFWPPIAEPLYRYIRGDEDYLYSYTKGFSTLPTPSQV 591
            A C + + + ++   V I +  VRVYR W+IL++H   MWPA  QV ++S   L P +A  +  +L  ++E  N C T      +  A+   G   +    F    Q+R VRKQ NEY      L  L ++  +   +   +  + H + R  A+ + V+ +  L W  + EP+ +   GDE YL+S+TKGFS +P+P+Q+
Sbjct:   66 AICYIDTTLSWSTLAVHIMSFAVRVYRMWRILIKHDDSMWPAKYQVMVMSSISLGPLLAAVLVPDLHFFDETVNSCNTTTDSRNVVLAMNALGFYLICYLWFVCTRQLRWVRKQFNEYEAMKWTLSCLTLLLFSYAAVVAIILNNQHVLVRRVAIVYPVLSTYTLLWGSVGEPVVKKFTGDEGYLWSFTKGFSEMPSPAQL 266          
BLAST of mRNA_H-elongata_contig93136.16764.1 vs. uniprot
Match: A0A6H5KAT5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT5_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 5.950e-21
Identity = 63/201 (31.34%), Postives = 100/201 (49.75%), Query Frame = 1
Query:    1 AHCGLMSLIDYAGWGVWISAALVRVYRSWKILVRHSVDMWPAWRQVALLSIPFLIPAVAYTIDEELAPYNERSNWCET--FDPIHA-ALYFYGCVPVASA-FGLVYQMRRVRKQMNEYRMQALQLLFLLIMGGTVFPLQKTVFLSNHSIRRIWAMYHNVVCSVILFWPPIAEPLYRYIRGDEDYLYSYTKGFSTLPTPSQV 591
            A C     + ++   V   A  +RVYR W+IL++H   MW    Q+  +S   LIP VA         ++E +N C T  F  I    +   G + +    F    Q++ VRKQ NEY      LL++ I   +   +   +   N  + R  ++++ ++ + IL W  I EP    I GD++YL+SYTKGF+ LP+P+Q+
Sbjct:   72 AACDFERFLSWSTLCVHTVAFFIRVYRMWRILIKHDDQMWHTGHQILFMSSLSLIPVVATWAVPHTGYFDEVANTCSTTTFSTIVVLGMDALGFLAICYLWFVCARQLKWVRKQFNEYETMKRTLLYMTITLASYGVIVVYLLADNLVLGRRVSVFYPLLTTYILLWGSIREPFMMKILGDDEYLWSYTKGFAQLPSPAQL 272          
BLAST of mRNA_H-elongata_contig93136.16764.1 vs. uniprot
Match: D7FTZ9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ9_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.550e-20
Identity = 68/207 (32.85%), Postives = 103/207 (49.76%), Query Frame = 1
Query:    1 AHCGLMSLIDYAGWGVWISAALVRVYRSWKILVRHSVDMWPAWRQVALLSIPFLIPAVAYTIDEELAPYNERSNWCETFDPIHA------ALYFYGCVPVASAFGLVYQMRRVRKQMNEYRM--QALQLLFLLIMGGTVFPLQKTVFLSN--HSIRRIWAMYHNVVCSVILFWPPIAEPLYRYIRGDEDYLYSYTKGFSTLPTPSQV 591
            A C L  L+ ++   + + A  +RVY  W+I+VRH  D+     Q+ LLS   L+P +   +      ++E  N C T            A+ FY    +    G   Q+RRVRKQ NEY      L  L LL++  TV      + L N  H + R  A+ + V+ +  L W  I EPL +   GD +YL+S+T+GFS +P+P+Q+
Sbjct:   82 AECSLEKLLTWSTLCIHMFAFFIRVYLMWRIMVRHDEDVGSPKGQIFLLSSISLVPPLIALLVPGAYVFDETINSCNTTSTSRTVGLGMNAVGFYTICFLWFVCGR--QLRRVRKQFNEYEAIKWTLSCLILLVLSYTVGV---NIILDNKHHVLARRLAIVYPVLTTHTLLWGSIGEPLLKKWEGDREYLWSFTRGFSEMPSPAQL 283          
BLAST of mRNA_H-elongata_contig93136.16764.1 vs. uniprot
Match: A0A6H5JMI3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI3_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.820e-20
Identity = 58/199 (29.15%), Postives = 109/199 (54.77%), Query Frame = 1
Query:    1 AHCGLMSLIDYAGWGVWISAALVRVYRSWKILVRHSVDMWPAWRQVALLSIPFLIPAVAYTIDEELAPYNERSNWCE--TFDPIHAALYFYGCVPVASAFGLVYQMRRVRKQMNEYRMQALQLLFLLIMGGTVFPLQKTVFLSNHSIRRIWAMYHNVVCSVILFWPPIAEPLYRYIRGDEDYLYSYTKGFSTLPTPSQV 591
            ++C    ++   G G++ + A+VRVYR++K+L+ H+VDM P   Q+ ++  P  + A+ + +   +A ++  +N C+      +  A  + G + + S + L+++MR  R+QM EYR   + L+ LL+M   V      +   +   RRI A+ +N+V  ++LFWP I  PL +Y + D+ Y   ++ G     TP+ +
Sbjct:   79 SNCFFQGVLVSTGAGLYFAGAVVRVYRNYKVLMLHTVDMLPPTVQILIVQAPMWVAAM-FLLIPSVASFDFEANRCKGNARHVLLGAFNYAGLLVIGSVY-LLWKMRDARRQMTEYRAMMVSLVSLLVMLAAVNLTAGKIAEDDTLTRRI-ALLNNMVRGLLLFWPVIFTPLCKYAKRDQRYAERFSAGMRPSITPAML 274          
BLAST of mRNA_H-elongata_contig93136.16764.1 vs. uniprot
Match: A0A6H5L5B5_9PHAE (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5B5_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 8.590e-20
Identity = 56/166 (33.73%), Postives = 87/166 (52.41%), Query Frame = 1
Query:    1 AHCGLMSLIDYAGWGVWISAALVRVYRSWKILVRHSVDMWPAWRQVALLSIPFLIPAVAYTIDEELAPYNERSNWCETFDPIHAALYFYGCVPVASAFGLVYQMR--RVRKQMNEYRMQALQLLFLLIMGGTVFPLQKTVFLSNHSIRRIWAMYHNVVCSVILFWP 492
            A CG+ +L+   G  +    A VRVYR+  +LVRHS  MW    Q+ L+S+PFL+PA+ YT+D  LA + +  N C     I+ A++ +    V+    LV +++  RVRKQ+N+  +    + FLL+    + P     +  N S  R  AM  ++V    L  P
Sbjct:   73 ARCGVEALLTLLGMALLFFPAFVRVYRNHMVLVRHSASMWAPMAQLQLVSLPFLVPAITYTLDPSLAEFEDYRNRCIGNTGINLAVFTFMAAAVSVGTVLVARIKAKRVRKQLNDDTVMMTSVAFLLVWVLYLIPTGHWFWDDNPSATRRLAMVDSIVVRTRLAVP 238          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93136.16764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7G0B4_ECTSI9.980e-9063.96RGS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5K1F7_9PHAE7.130e-8763.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7J3_ECTSI3.850e-8365.99RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LI44_ECTSI2.000e-4056.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G9A7_ECTSI3.020e-3336.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTZ6_ECTSI1.640e-2231.84Similar to regulator of G-protein signaling 16 n=1... [more]
A0A6H5KAT5_9PHAE5.950e-2131.34RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTZ9_ECTSI2.550e-2032.85RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JMI3_9PHAE2.820e-2029.15RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L5B5_9PHAE8.590e-2033.73G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93136contigH-elongata_contig93136:163..2409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score270.0
Seed ortholog evalue8.5e-70
Seed eggNOG ortholog2880.D7G0B4
Preferred nameRGS1
KEGG koko:K16449
GOsGO:0001101,GO:0003674,GO:0004888,GO:0004930,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005886,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0008047,GO:0008150,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010182,GO:0012505,GO:0016020,GO:0023052,GO:0030234,GO:0030695,GO:0031090,GO:0031410,GO:0031982,GO:0033993,GO:0034284,GO:0038023,GO:0042127,GO:0042221,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051336,GO:0051345,GO:0051716,GO:0060089,GO:0060589,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071322,GO:0071944,GO:0097305,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901700,GO:1901701
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2CNEE@1,2QVMV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorysignal peptide
Exons4
Model size591
Cds size576
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93136.16764.1prot_H-elongata_contig93136.16764.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93136 178..2409 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931328.954539-UTR-H-elongata_contig93136:162..1771622931328.954539-UTR-H-elongata_contig93136:162..177Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93136 163..177 +
1691679792.2059693-UTR-H-elongata_contig93136:162..1771691679792.2059693-UTR-H-elongata_contig93136:162..177Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93136 163..177 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931328.9744735-CDS-H-elongata_contig93136:177..3231622931328.9744735-CDS-H-elongata_contig93136:177..323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93136 178..323 +
1691679792.2194827-CDS-H-elongata_contig93136:177..3231691679792.2194827-CDS-H-elongata_contig93136:177..323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93136 178..323 +
1622931328.9963145-CDS-H-elongata_contig93136:896..10861622931328.9963145-CDS-H-elongata_contig93136:896..1086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93136 897..1086 +
1691679792.2274456-CDS-H-elongata_contig93136:896..10861691679792.2274456-CDS-H-elongata_contig93136:896..1086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93136 897..1086 +
1622931329.0137389-CDS-H-elongata_contig93136:1843..19601622931329.0137389-CDS-H-elongata_contig93136:1843..1960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93136 1844..1960 +
1691679792.2354105-CDS-H-elongata_contig93136:1843..19601691679792.2354105-CDS-H-elongata_contig93136:1843..1960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93136 1844..1960 +
1622931329.0329094-CDS-H-elongata_contig93136:2286..24091622931329.0329094-CDS-H-elongata_contig93136:2286..2409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93136 2287..2409 +
1691679792.2432392-CDS-H-elongata_contig93136:2286..24091691679792.2432392-CDS-H-elongata_contig93136:2286..2409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93136 2287..2409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93136.16764.1

>prot_H-elongata_contig93136.16764.1 ID=prot_H-elongata_contig93136.16764.1|Name=mRNA_H-elongata_contig93136.16764.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=192bp
MSLIDYAGWGVWISAALVRVYRSWKILVRHSVDMWPAWRQVALLSIPFLI
PAVAYTIDEELAPYNERSNWCETFDPIHAALYFYGCVPVASAFGLVYQMR
RVRKQMNEYRMQALQLLFLLIMGGTVFPLQKTVFLSNHSIRRIWAMYHNV
VCSVILFWPPIAEPLYRYIRGDEDYLYSYTKGFSTLPTPSQV
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mRNA from alignment at H-elongata_contig93136:163..2409+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93136.16764.1 ID=mRNA_H-elongata_contig93136.16764.1|Name=mRNA_H-elongata_contig93136.16764.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2247bp|location=Sequence derived from alignment at H-elongata_contig93136:163..2409+ (Himanthalia elongata Himel1 dioecious)
GCTCACTGCGGCCTGATGAGCCTCATCGACTACGCCGGGTGGGGCGTGTG GATATCAGCCGCCCTCGTCCGTGTGTACCGCAGCTGGAAGATCCTCGTGA GGCACTCGGTGGACATGTGGCCAGCCTGGAGGCAGGTGGCGCTCCTCAGC ATCCCGTTCTTGTGAGTCTCGAGAGCGGATGCTCCACCGACAAGGCCTCA AAAGAATTATGTTCAATCGCCTCTCGAGGAAACGGCGCGCGCGAGGACGG CCATAGGGCTTTAAACATGTAACGAGGCTTTTGCGTAGTCACAAAGAAGC GGCGTACGGGGGAACGCACATACAATCCCGCCCTCACTGCTGCTGCTGTT GCTGCTGCCAATTATCACTCGAAGCTGCAGAGCTCTCTGAGGAAGATACG GTGGAATATTTTGCCCGTTTTTCAAAACGGTTCAACTATTTATCGCTTGG GCTTCCGTGCTACCCCTAATACCTAGGGAGTTCATAGATATGAAAACGTT ACCGTCCTTCCGATTCCATCTATCCGATCAGACAGCTGTGCGATACGCGA AGCGCGAGGCCTTCTTGTATCCTGCCGTCTCCGCTCATCGTCCCCTCCAA ATCCCTGGAAACCCCCTGACGTTCGTGTCGGGACTAATAACACCACTATG CTACGCCACTACTACTAGTCCTCTACCACTGACTATGTCTTGTTCTCTGA TATTTTTTGGGGGGGGGTTATTATACCTGCACAGGATTCCCGCCGTGGCG TACACGATCGATGAGGAACTCGCCCCTTACAACGAGCGCAGTAACTGGTG CGAGACATTCGACCCCATCCACGCGGCACTGTACTTCTACGGCTGCGTGC CCGTCGCCTCCGCGTTCGGGCTGGTGTACCAAATGAGGAGGGTCAGGAAA CAGATGAATGAGTACCGGATGCAGGTGGGCCACCTTTGCGCGATAATATT TGCCGTATTAACCGTGTGGTCAGTTAACGCAAATTTGCACTTGTCTCAAT AGTTCCGGTGCTGTCCGCTCCCTAATTCATCATCGAAACATATCGTGTGT CTCTGGCTGGATATAAAGATGTAAGCTATGTGCGCTTGCGGCTCTGCGCT GACCCGCCCTCTCTTCTTGCATCTATCCCGTGACCACCCTGCTGAAAGGC TGTACGCGCGCCCGCTTCGGGTTCATTTGACAACCAAACGGCGACACACA TACGATTACTTGTCATTCATTAAATTCGTCATGATTTGCGCCTACCCCCC CCCCCCCCCCTTTCCCCTCTTTTTTTCCCCACACCCCTCCCAACCCCCAA CCCTAAAAAAAATAAAAAANNNNNNNNNNCCTCCCCCACCCCCCCCCCAT CTTCATTAAATTTGTCCTTATTTCCCCCCCCCCCCCCCCCCCCCCGTTTC CCGTCTTATATCCCGCACACGCATCCACACAGACATCCATACACATAATA CAGAACCATATCATTCATATATATGCCCCAACCCAATCCACGACGGTGCT GGCGTCCTACTGTTATCCTACTAACTTATGTTGATTTTACGTAGGCGGGG GAGGGGGGGTTCTTGCCCCCTTCTGTCAATGCTCCGTCTTTCCCGAGTCC GCGTGGTCAATGGTCTAAAACTTATGACATGAACAAGAAATAACCCCAGC TCCCCTCCACCCCCACCCCCTCATAAAAAAGGCGCTACAACTTCTATTCC TGCTCATCATGGGAGGCACCGTGTTCCCCCTCCAGAAGACGGTATTTCTC TCAAACCACAGCATCAGGCGGATATGGGCCATGTACCACAATGTCGTGGT GAGCGTGTAATTCCGCGGCTAGTGACATCATGTAACTGAATGTCGCTGCT GATGACGCCTTGCGACAAGCCGTGAACTCTTCGAGGAAAATGGAACGAGG ACACCTATCCAGTAGGAGGCGGGGGTGATGGGGGGGGGGTGGGGGGGATA CATACGTACGTGGGTCATGCCGCCTACGGTAATTCCTTCGAGGGTTTTGG CTTGGGCATCACTTATGCACCGCGCTCGCCGATCCTCCGCGCCGTCTTTT GGTGACCACCGTGCGTCAACATTTTTTGCTTTGGCCGCTGAATAATTCTT CGTTACCCCGTGGTCGTGTGACAGTGCTCGGTTATCCTCTTCTGGCCGCC CATCGCCGAGCCGCTGTACCGCTACATCAGGGGAGACGAGGACTACCTTT ATAGCTACACCAAGGGCTTCTCCACGCTTCCCACTCCGTCGCAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig93136:163..2409+

>mRNA_H-elongata_contig93136.16764.1 ID=mRNA_H-elongata_contig93136.16764.1|Name=mRNA_H-elongata_contig93136.16764.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1152bp|location=Sequence derived from alignment at H-elongata_contig93136:163..2409+ (Himanthalia elongata Himel1 dioecious)
ATGAGCCTCATCGACTACGCCGGGTGGGGCGTGTGGATATCAGCCGCCCT
CGTCCGTGTGTACCGCAGCTGGAAGATCCTCGTGAGGCACTCGGTGGACA
TGTGGCCAGCCTGGAGGCAGGTGGCGCTCCTCAGCATCCCGTTCTTATGA
GCCTCATCGACTACGCCGGGTGGGGCGTGTGGATATCAGCCGCCCTCGTC
CGTGTGTACCGCAGCTGGAAGATCCTCGTGAGGCACTCGGTGGACATGTG
GCCAGCCTGGAGGCAGGTGGCGCTCCTCAGCATCCCGTTCTTGATTCCCG
CCGTGGCGTACACGATCGATGAGGAACTCGCCCCTTACAACGAGCGCAGT
AACTGGTGCGAGACATTCGACCCCATCCACGCGGCACTGTACTTCTACGG
CTGCGTGCCCGTCGCCTCCGCGTTCGGGCTGGTGTACCAAATGAGGAGGG
TCAGGAAACAGATGAATGAGTACCGGATGCAGGATTCCCGCCGTGGCGTA
CACGATCGATGAGGAACTCGCCCCTTACAACGAGCGCAGTAACTGGTGCG
AGACATTCGACCCCATCCACGCGGCACTGTACTTCTACGGCTGCGTGCCC
GTCGCCTCCGCGTTCGGGCTGGTGTACCAAATGAGGAGGGTCAGGAAACA
GATGAATGAGTACCGGATGCAGGCGCTACAACTTCTATTCCTGCTCATCA
TGGGAGGCACCGTGTTCCCCCTCCAGAAGACGGTATTTCTCTCAAACCAC
AGCATCAGGCGGATATGGGCCATGTACCACAATGTCGTGGCGCTACAACT
TCTATTCCTGCTCATCATGGGAGGCACCGTGTTCCCCCTCCAGAAGACGG
TATTTCTCTCAAACCACAGCATCAGGCGGATATGGGCCATGTACCACAAT
GTCGTGTGCTCGGTTATCCTCTTCTGGCCGCCCATCGCCGAGCCGCTGTA
CCGCTACATCAGGGGAGACGAGGACTACCTTTATAGCTACACCAAGGGCT
TCTCCACGCTTCCCACTCCGTCGCAGGTATGCTCGGTTATCCTCTTCTGG
CCGCCCATCGCCGAGCCGCTGTACCGCTACATCAGGGGAGACGAGGACTA
CCTTTATAGCTACACCAAGGGCTTCTCCACGCTTCCCACTCCGTCGCAGG
TA
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