mRNA_H-elongata_contig93044.16754.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93044.16754.1
Unique NamemRNA_H-elongata_contig93044.16754.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 5.190e-17
Identity = 54/138 (39.13%), Postives = 70/138 (50.72%), Query Frame = 1 
Query:   76 TPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWTEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVGYLRRSKPRHKLDPRGASCIMLGLAPNCPRDTFRERDITTGQILNRQAVTW 468
            +PQYNGV ER LGL+ +  +A       L   V   K+D+LW EAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P  KL P+G SC  +G + + PRD  R      G I   + VTW
Sbjct:   76 SPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRVL-TRAGTIQETRDVTW 210
[Close]
BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 5.360e-17
Identity = 54/138 (39.13%), Postives = 70/138 (50.72%), Query Frame = 1 
Query:   76 TPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWTEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVGYLRRSKPRHKLDPRGASCIMLGLAPNCPRDTFRERDITTGQILNRQAVTW 468
            +PQYNGV ER LGL+ +  +A       L   V   K+D+LW EAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P  KL P+G SC  +G + + PRD  R      G I   + VTW
Sbjct:  343 SPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRVL-TRAGTIQETRDVTW 477
[Close]
BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 5.370e-17
Identity = 54/138 (39.13%), Postives = 70/138 (50.72%), Query Frame = 1 
Query:   76 TPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWTEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVGYLRRSKPRHKLDPRGASCIMLGLAPNCPRDTFRERDITTGQILNRQAVTW 468
            +PQYNGV ER LGL+ +  +A       L   V   K+D+LW EAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P  KL P+G SC  +G + + PRD  R      G I   + VTW
Sbjct:  822 SPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRVL-TRAGTIQETRDVTW 956
[Close]
BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 5.400e-17
Identity = 54/138 (39.13%), Postives = 70/138 (50.72%), Query Frame = 1 
Query:   76 TPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWTEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVGYLRRSKPRHKLDPRGASCIMLGLAPNCPRDTFRERDITTGQILNRQAVTW 468
            +PQYNGV ER LGL+ +  +A       L   V   K+D+LW EAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P  KL P+G SC  +G + + PRD  R      G I   + VTW
Sbjct:  529 SPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRVL-TRAGTIQETRDVTW 663
[Close]
BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.880e-16
Identity = 54/139 (38.85%), Postives = 71/139 (51.08%), Query Frame = 1 
Query:   76 TPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWTEAMAYACDMWNRCTSSSLDSGTSPYELWYGR-RPTFDNIPPFGTVGYLRRSKPRHKLDPRGASCIMLGLAPNCPRDTFRERDITTGQILNRQAVTW 468
            +PQYNGV ER LGL+ +  +A       L   V   K+D+LW EAM +AC+  N    S+     SPYE+WYG  RP      PF    Y +  +P  KL P+G SC  +G + + PRD  R      G I   + VTW
Sbjct:  426 SPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYCKWQRPS-KLFPKGESCFYVGPSRDHPRDCHRVL-TRAGTIQETRDVTW 560
[Close]
BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.920e-16
Identity = 49/121 (40.50%), Postives = 64/121 (52.89%), Query Frame = 1 
Query:   76 TPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWTEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVGYLRRSKPRHKLDPRGASCIMLGLAPNCPRDTFR 417
            +PQYNGV ER LGL+ +  +A       L   V   K+D+LW EAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P  KL P+G SC  +G + + PRD  R
Sbjct:  190 SPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHR 308
[Close]
BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.200e-16
Identity = 53/139 (38.13%), Postives = 73/139 (52.52%), Query Frame = 1 
Query:   76 TPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWTEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVGYLRRSKPRHKLDPRGASCIMLGLAPNCPRDTFRERDITTGQILNR-QAVTW 468
            +PQYNGV ER LGL+ +  +A       L   V   K+D+LW EAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P  KL P+G SC  +G + + PRD  R   +T  + + + + VTW
Sbjct:  410 SPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRV--LTRARTIQKTRDVTW 544
[Close]
BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.410e-16
Identity = 53/138 (38.41%), Postives = 69/138 (50.00%), Query Frame = 1 
Query:   76 TPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWTEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVGYLRRSKPRHKLDPRGASCIMLGLAPNCPRDTFRERDITTGQILNRQAVTW 468
            +PQYNGV ER LGL+ +  +A       L   V   K+D+LW EAM +AC+  N    S+      PYE+WYG  P      PF    Y R  +P  KL P+G SC  +G + + PRD  R      G I   + VTW
Sbjct:  288 SPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRVL-TRAGTIQETRDVTW 422
[Close]
BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot
Match: A0A6H5KWE4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE4_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 6.510e-16
Identity = 52/138 (37.68%), Postives = 69/138 (50.00%), Query Frame = 1 
Query:   76 TPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWTEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFDNIPPFGTVGYLRRSKPRHKLDPRGASCIMLGLAPNCPRDTFRERDITTGQILNRQAVTW 468
            +PQYNGV ER LGL+    +A       L   V   K+DRLW EAM +AC+  N    S+     SPYE+W+G   +     PF    Y R  +P  KL P+G +C  +G + + PRD  R      G I   + VTW
Sbjct:   76 SPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEA-SHARPYPFLKPAYCRWQRPS-KLLPKGEACFYVGPSRDHPRDCHRVL-TRVGTIQETRNVTW 210
[Close]
BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 8.580e-16
Identity = 53/139 (38.13%), Postives = 71/139 (51.08%), Query Frame = 1 
Query:   76 TPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWTEAMAYACDMWNRCTSSSLDSGTSPYELWYGR-RPTFDNIPPFGTVGYLRRSKPRHKLDPRGASCIMLGLAPNCPRDTFRERDITTGQILNRQAVTW 468
            +P++NGV ER LGL+ +  +A       L   V   K+DRLW EAM +AC+  N    S+     SPYE+WYG  RP      PF    Y +  +P  KL P+G SC  +G + + PRD  R      G I   + VTW
Sbjct:  573 SPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYCKWQRPS-KLLPKGESCFYVGPSRDHPRDCHRVL-TRAGTIQETRNVTW 707
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93044.16754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKK1_9PHAE5.190e-1739.13Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE5.360e-1739.13Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JBA7_9PHAE5.370e-1739.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE5.400e-1739.13Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB16_9PHAE1.880e-1638.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KVR5_9PHAE1.920e-1640.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV76_9PHAE2.200e-1638.13Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L3Y0_9PHAE2.410e-1638.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KWE4_9PHAE6.510e-1637.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K622_9PHAE8.580e-1638.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93044contigH-elongata_contig93044:111..626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score71.2
Seed ortholog evalue5.2e-10
Seed eggNOG ortholog4558.Sb07g028153.1
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size516
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931328.1972432-CDS-H-elongata_contig93044:110..6261622931328.1972432-CDS-H-elongata_contig93044:110..626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93044 111..626 -
1691679791.991337-CDS-H-elongata_contig93044:110..6261691679791.991337-CDS-H-elongata_contig93044:110..626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93044 111..626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93044.16754.1prot_H-elongata_contig93044.16754.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93044 111..626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93044.16754.1

>prot_H-elongata_contig93044.16754.1 ID=prot_H-elongata_contig93044.16754.1|Name=mRNA_H-elongata_contig93044.16754.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp
MVKELERVERTVDPKDVNIIILGGLTPQYNGVVERALGLLRDKTVALLRG
VMEGKSDRLWTEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFDNIP
PFGTVGYLRRSKPRHKLDPRGASCIMLGLAPNCPRDTFRERDITTGQILN
RQAVTWHPPTGGRGTRPFPHHP
back to top

mRNA from alignment at H-elongata_contig93044:111..626-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93044.16754.1 ID=mRNA_H-elongata_contig93044.16754.1|Name=mRNA_H-elongata_contig93044.16754.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=516bp|location=Sequence derived from alignment at H-elongata_contig93044:111..626- (Himanthalia elongata Himel1 dioecious)
ATGGTCAAGGAACTGGAAAGGGTGGAGCGAACGGTGGACCCAAAGGACGT
GAACATCATAATTCTTGGCGGCCTCACACCCCAATACAATGGCGTCGTGG
AGCGCGCTCTAGGGCTACTGCGCGACAAGACCGTGGCCCTGCTGCGAGGT
GTAATGGAGGGTAAGAGCGACCGTCTATGGACCGAAGCTATGGCGTACGC
ATGCGATATGTGGAACCGATGCACCTCCTCCTCCCTCGACAGTGGCACCT
CGCCATATGAGCTTTGGTACGGCAGACGTCCGACATTTGACAACATCCCC
CCATTCGGGACCGTGGGGTATCTACGACGGTCGAAGCCGAGGCACAAACT
AGATCCCCGCGGGGCGAGCTGCATCATGCTCGGGCTGGCCCCCAACTGCC
CGCGGGACACTTTCCGGGAGCGTGACATCACCACAGGCCAGATCCTCAAC
CGTCAAGCCGTCACCTGGCACCCACCGACCGGGGGGAGGGGAACACGCCC
CTTTCCGCACCATCCA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig93044:111..626-

>mRNA_H-elongata_contig93044.16754.1 ID=mRNA_H-elongata_contig93044.16754.1|Name=mRNA_H-elongata_contig93044.16754.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at H-elongata_contig93044:111..626- (Himanthalia elongata Himel1 dioecious)
ATGGTCAAGGAACTGGAAAGGGTGGAGCGAACGGTGGACCCAAAGGACGT
GAACATCATAATTCTTGGCGGCCTCACACCCCAATACAATGGCGTCGTGG
AGCGCGCTCTAGGGCTACTGCGCGACAAGACCGTGGCCCTGCTGCGAGGT
GTAATGGAGGGTAAGAGCGACCGTCTATGGACCGAAGCTATGGCGTACGC
ATGCGATATGTGGAACCGATGCACCTCCTCCTCCCTCGACAGTGGCACCT
CGCCATATGAGCTTTGGTACGGCAGACGTCCGACATTTGACAACATCCCC
CCATTCGGGACCGTGGGGTATCTACGACGGTCGAAGCCGAGGCACAAACT
AGATCCCCGCGGGGCGAGCTGCATCATGCTCGGGCTGGCCCCCAACTGCC
CGCGGGACACTTTCCGGGAGCGTGACATCACCACAGGCCAGATCCTCAAC
CGTCAAGCCGTCACCTGGCACCCACCGACCGGGGGGAGGGGAACACGCCC
CTTTCCGCACCATCCAATGGTCAAGGAACTGGAAAGGGTGGAGCGAACGG
TGGACCCAAAGGACGTGAACATCATAATTCTTGGCGGCCTCACACCCCAA
TACAATGGCGTCGTGGAGCGCGCTCTAGGGCTACTGCGCGACAAGACCGT
GGCCCTGCTGCGAGGTGTAATGGAGGGTAAGAGCGACCGTCTATGGACCG
AAGCTATGGCGTACGCATGCGATATGTGGAACCGATGCACCTCCTCCTCC
CTCGACAGTGGCACCTCGCCATATGAGCTTTGGTACGGCAGACGTCCGAC
ATTTGACAACATCCCCCCATTCGGGACCGTGGGGTATCTACGACGGTCGA
AGCCGAGGCACAAACTAGATCCCCGCGGGGCGAGCTGCATCATGCTCGGG
CTGGCCCCCAACTGCCCGCGGGACACTTTCCGGGAGCGTGACATCACCAC
AGGCCAGATCCTCAACCGTCAAGCCGTCACCTGGCACCCACCGACCGGGG
GGAGGGGAACACGCCCCTTTCCGCACCATCCA
back to top