mRNA_H-elongata_contig93044.16755.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93044.16755.1
Unique NamemRNA_H-elongata_contig93044.16755.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig93044.16755.1 vs. uniprot
Match: A0A1Y1MJE9_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1MJE9_PHOPY)

HSP 1 Score: 53.1 bits (126), Expect = 1.980e-5
Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:  241 FSSRRTRRVDIKDHIVRGAIDGGVVHIEYVRSWEQHADILTKSVGVKTFE 390
              +RRT+ +DIK H +R  ++   +HI+Y+ S EQ ADILTKS+ +  FE
Sbjct:  928 LETRRTKHIDIKHHYIRDCVESERIHIQYIPSNEQQADILTKSLSLSKFE 977
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BLAST of mRNA_H-elongata_contig93044.16755.1 vs. uniprot
Match: B8MCQ7_TALSN (Uncharacterized protein n=1 Tax=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) TaxID=441959 RepID=B8MCQ7_TALSN)

HSP 1 Score: 49.7 bits (117), Expect = 4.500e-5
Identity = 21/50 (42.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:  247 SRRTRRVDIKDHIVRGAIDGGVVHIEYVRSWEQHADILTKSVGVKTFEKH 396
            S R++ +DI+ H++R AI  G++ +EY+R+ E  ADILTK++  +  E+H
Sbjct:   25 STRSKHIDIRFHVIREAIANGLIRLEYIRTTEMTADILTKALPKELHERH 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93044.16755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1Y1MJE9_PHOPY1.980e-546.00Integrase catalytic domain-containing protein (Fra... [more]
B8MCQ7_TALSN4.500e-542.00Uncharacterized protein n=1 Tax=Talaromyces stipit... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93044contigH-elongata_contig93044:1603..2010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size408
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931328.1411438-CDS-H-elongata_contig93044:1602..20101622931328.1411438-CDS-H-elongata_contig93044:1602..2010Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93044 1603..2010 -
1691679791.9813516-CDS-H-elongata_contig93044:1602..20101691679791.9813516-CDS-H-elongata_contig93044:1602..2010Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93044 1603..2010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93044.16755.1prot_H-elongata_contig93044.16755.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93044 1603..2010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93044.16755.1

>prot_H-elongata_contig93044.16755.1 ID=prot_H-elongata_contig93044.16755.1|Name=mRNA_H-elongata_contig93044.16755.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MGEAQASSEWPQWKRAIAREMDGQTTRGVWQVVERPKGKTVLGTRVAFPL
TGQRVHDPSNRPRHQDTRGQRRRNQDSENRFSSRRTRRVDIKDHIVRGAI
DGGVVHIEYVRSWEQHADILTKSVGVKTFEKHAISL
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mRNA from alignment at H-elongata_contig93044:1603..2010-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93044.16755.1 ID=mRNA_H-elongata_contig93044.16755.1|Name=mRNA_H-elongata_contig93044.16755.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=408bp|location=Sequence derived from alignment at H-elongata_contig93044:1603..2010- (Himanthalia elongata Himel1 dioecious)
ATGGGCGAGGCGCAAGCGTCGTCGGAGTGGCCGCAATGGAAAAGGGCGAT
CGCGCGCGAGATGGATGGGCAAACTACTCGAGGCGTGTGGCAGGTGGTGG
AGCGCCCAAAAGGGAAGACGGTGTTGGGCACAAGAGTTGCATTTCCTTTG
ACAGGTCAAAGAGTTCATGACCCCTCCAATCGACCTCGCCATCAAGATAC
ACGAGGACAACGAAGGCGCAATCAAGATAGCGAAAACCGCTTCAGCAGTC
GACGAACGAGGCGCGTGGACATCAAGGATCACATTGTCCGCGGCGCGATC
GATGGGGGCGTGGTTCACATAGAATACGTTCGGTCCTGGGAACAGCACGC
CGACATCCTCACGAAGTCCGTAGGCGTCAAAACATTTGAGAAGCACGCGA
TATCCCTT
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Coding sequence (CDS) from alignment at H-elongata_contig93044:1603..2010-

>mRNA_H-elongata_contig93044.16755.1 ID=mRNA_H-elongata_contig93044.16755.1|Name=mRNA_H-elongata_contig93044.16755.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig93044:1603..2010- (Himanthalia elongata Himel1 dioecious)
ATGGGCGAGGCGCAAGCGTCGTCGGAGTGGCCGCAATGGAAAAGGGCGAT
CGCGCGCGAGATGGATGGGCAAACTACTCGAGGCGTGTGGCAGGTGGTGG
AGCGCCCAAAAGGGAAGACGGTGTTGGGCACAAGAGTTGCATTTCCTTTG
ACAGGTCAAAGAGTTCATGACCCCTCCAATCGACCTCGCCATCAAGATAC
ACGAGGACAACGAAGGCGCAATCAAGATAGCGAAAACCGCTTCAGCAGTC
GACGAACGAGGCGCGTGGACATCAAGGATCACATTGTCCGCGGCGCGATC
GATGGGGGCGTGGTTCACATAGAATACGTTCGGTCCTGGGAACAGCACGC
CGACATCCTCACGAAGTCCGTAGGCGTCAAAACATTTGAGAAGCACGCGA
TATCCCTTATGGGCGAGGCGCAAGCGTCGTCGGAGTGGCCGCAATGGAAA
AGGGCGATCGCGCGCGAGATGGATGGGCAAACTACTCGAGGCGTGTGGCA
GGTGGTGGAGCGCCCAAAAGGGAAGACGGTGTTGGGCACAAGAGTTGCAT
TTCCTTTGACAGGTCAAAGAGTTCATGACCCCTCCAATCGACCTCGCCAT
CAAGATACACGAGGACAACGAAGGCGCAATCAAGATAGCGAAAACCGCTT
CAGCAGTCGACGAACGAGGCGCGTGGACATCAAGGATCACATTGTCCGCG
GCGCGATCGATGGGGGCGTGGTTCACATAGAATACGTTCGGTCCTGGGAA
CAGCACGCCGACATCCTCACGAAGTCCGTAGGCGTCAAAACATTTGAGAA
GCACGCGATATCCCTT
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