mRNA_H-elongata_contig93020.16752.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93020.16752.1
Unique NamemRNA_H-elongata_contig93020.16752.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig93020.16752.1 vs. uniprot
Match: D7FMV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV8_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 8.630e-54
Identity = 96/134 (71.64%), Postives = 109/134 (81.34%), Query Frame = 1 
Query:    1 RARVFRFSDLRNDWLAGGDVARSTQASYTVRVERIPRAFRSPAMLQKFFSTLFPGQIYSATVCLGLEELKPLTLKRDKCLQAIESALIRESALGKATTVRDGWCGLKVNAVRHYGNVLANINSQLRPKQEHKLE 402
            R   F FSDLRNDWLAGGDVARSTQ +YTVRVERIPRAFRSP +LQKFFSTLFPGQI+SATVCLGL++L+ LTLKR KCLQA+E A+IR+  L  +  VR  W G K +AVR+YG  LA IN +LRPKQE KLE
Sbjct:  213 RKEFFAFSDLRNDWLAGGDVARSTQTAYTVRVERIPRAFRSPVILQKFFSTLFPGQIHSATVCLGLKDLRALTLKRAKCLQALERAIIRQEVLKLSPQVRPSWFGPKEDAVRYYGLRLAEINQKLRPKQEAKLE 346
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BLAST of mRNA_H-elongata_contig93020.16752.1 vs. uniprot
Match: A0A7S1XZC5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZC5_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.160e-9
Identity = 30/84 (35.71%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:   19 FSDLRNDWLAGGDVARSTQASYTVRVERIPRAFRSPAMLQKFFSTLFPGQIYSATVCLGLEELKPLTLKRDKCLQAIESALIRE 270
            F  LR+D++  G    + Q  YT+ VE +P+  R+P ML  +F  LFPGQ+YS ++C+  +++  L   R+  L+ +E+  I E
Sbjct:  203 FVQLRHDFITNGFKGGNKQTGYTILVENLPKRLRTPRMLFGYFDYLFPGQVYSTSICMESKKINGLLEVREDVLRHLETLYIFE 286
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BLAST of mRNA_H-elongata_contig93020.16752.1 vs. uniprot
Match: A0A8J9X4I7_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X4I7_PHATR)

HSP 1 Score: 59.7 bits (143), Expect = 1.100e-7
Identity = 30/92 (32.61%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:   19 FSDLRNDWLAGGDVARSTQASYTVRVERIPRAFRSPAMLQKFFSTLFPGQIYSATVCLGLEELKPLTLKRDKCLQAIESALIRESALGKATT 294
            F DLR D+LA G++    Q  +++ +E IP   RS   L+++F  +FPG+++SA+V L L EL+  +++  +  + +E ++    A G   T
Sbjct:  230 FLDLRQDFLARGNMHVDPQHHHSLEIENIPYELRSDRALKEYFEKMFPGRVHSASVVLNLPELEDASVRCMRTCRRLEKSIAFLHATGNRPT 321
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BLAST of mRNA_H-elongata_contig93020.16752.1 vs. uniprot
Match: B7FTE9_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FTE9_PHATC)

HSP 1 Score: 59.7 bits (143), Expect = 1.210e-7
Identity = 30/92 (32.61%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:   19 FSDLRNDWLAGGDVARSTQASYTVRVERIPRAFRSPAMLQKFFSTLFPGQIYSATVCLGLEELKPLTLKRDKCLQAIESALIRESALGKATT 294
            F DLR D+LA G++    Q  +++ +E IP   RS   L+++F  +FPG+++SA+V L L EL+  +++  +  + +E ++    A G   T
Sbjct:  230 FLDLRQDFLARGNMHVDPQHHHSLEIENIPYELRSDRALKEYFEKMFPGRVHSASVVLNLPELEDASVRCMRTCRRLEKSIAFLHATGSRPT 321
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93020.16752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FMV8_ECTSI8.630e-5471.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1XZC5_9STRA2.160e-935.71Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A8J9X4I7_PHATR1.100e-732.61Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
B7FTE9_PHATC1.210e-732.61Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93020contigH-elongata_contig93020:465..2355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.2
Seed ortholog evalue1.6e-46
Seed eggNOG ortholog2880.D7FMV8
EggNOG free text desc.ion transport
EggNOG OGsCOG5594@1,KOG1134@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size423
Cds size423
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93020.16752.1prot_H-elongata_contig93020.16752.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93020 465..2355 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931328.0149913-CDS-H-elongata_contig93020:464..6141622931328.0149913-CDS-H-elongata_contig93020:464..614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93020 465..614 -
1691679791.924559-CDS-H-elongata_contig93020:464..6141691679791.924559-CDS-H-elongata_contig93020:464..614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93020 465..614 -
1622931328.0286963-CDS-H-elongata_contig93020:1272..13771622931328.0286963-CDS-H-elongata_contig93020:1272..1377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93020 1273..1377 -
1691679791.9374256-CDS-H-elongata_contig93020:1272..13771691679791.9374256-CDS-H-elongata_contig93020:1272..1377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93020 1273..1377 -
1622931328.0482006-CDS-H-elongata_contig93020:2187..23551622931328.0482006-CDS-H-elongata_contig93020:2187..2355Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93020 2188..2355 -
1691679791.9459648-CDS-H-elongata_contig93020:2187..23551691679791.9459648-CDS-H-elongata_contig93020:2187..2355Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93020 2188..2355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93020.16752.1

>prot_H-elongata_contig93020.16752.1 ID=prot_H-elongata_contig93020.16752.1|Name=mRNA_H-elongata_contig93020.16752.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
RARVFRFSDLRNDWLAGGDVARSTQASYTVRVERIPRAFRSPAMLQKFFS
TLFPGQIYSATVCLGLEELKPLTLKRDKCLQAIESALIRESALGKATTVR
DGWCGLKVNAVRHYGNVLANINSQLRPKQEHKLEAAKVMW*
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mRNA from alignment at H-elongata_contig93020:465..2355-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93020.16752.1 ID=mRNA_H-elongata_contig93020.16752.1|Name=mRNA_H-elongata_contig93020.16752.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1891bp|location=Sequence derived from alignment at H-elongata_contig93020:465..2355- (Himanthalia elongata Himel1 dioecious)
CGCGCGCGCGTGTTCAGGTTTTCGGACCTGCGAAACGATTGGTTGGCGGG
AGGCGATGTGGCGCGGAGCACTCAGGCCAGCTATACGGTTCGAGTGGAGC
GGATACCCCGGGCGTTCCGCAGCCCCGCAATGCTGCAGAAGTTCTTCAGC
ACCCTTTTCCCGGGCCAGGTTAGGATCGCCAGGAACAATAAGCCGCCGCC
CCCATATTCTAAGCGCCTGACTTGGAGTAGTTTTTAACGTTAGTCTTCCC
CACGTTGCCCAGTGCGGGCGCCTGTGACTTTTCGACTTCTTATCCTTGCC
CTCATCGATGACGCTGTCATAGTGTTATTGTGTGTATAGCACAGTGCCGA
CGTGTGCGTTATTGACCATTTGTATATCGGCCGAGACTTTTTTTTTTTTT
TTTTTTTTTCTTTTTTTGGTTTTTTTTCTTTTTGGGGGTGTGTTTTTTTT
TTTTTTTTTTTTTTTTTTTACTGTACGGATTTTTGACTTGTAGCGTGTGT
GATTAGTTTTTTTTTTAATCTAATTGATCAAAATCAAGTACACATGCAGT
ATGCGAGTTACCTGCTCGATTCTGGAGACCTCTCAAGATAGGAGAATTGA
TGAATTAAGGCGAAATTTGTCTTGTCACCTCGAGCGCAATGTTACACGGT
TCTTCGCGTGTCTCGAGCGTAGTTCGTTCTCCCCCGCGATAAATGAAGCT
GCTGCTGTTGCTGCTGCTGCTGCTGTTGCTGTTGCAGTTGCCTTGCTGCG
AGTATGTCGAAGATAGGATAAAAAAGACCGACAAAGAGAGCCTTAGTGTT
TGTGTGCGGGCCGCGTACAAGGAACAAACTGGCGTGTATGTAGTCCCCCG
GAATCTGGCATAGCATCATCCCCTTTCCCCCTCCTCGGTAACAGTGCTTC
CCATCCCAGCTGAAGATCTCCTCGGCGTCGGCTCGCCTCGCTTTATCCCG
CTTTTCTGTCGTGGGCTTCTCTGCGCAGATTTACAGCGCGACCGTATGTC
TCGGCCTGGAGGAGCTGAAGCCGTTGACGCTCAAACGCGACAAGTGTCTG
CAAGCCATAGAGAGCGCTCTCATCCGAGAGTCGGTAAGTTTTCTTCAAAA
AACATATGAACTCGTTTCAACCCTCTCCGAACATCCACGCCTTTTTGCCG
CAACAGGGAGTGTCGTAGTGTCGTGTCGTGTGGGGGGGAGTCCTAGGGAA
ATACAGCATGCTGTCCTACAGAGCGATGGAGTGGAGGGAGTTATGAATAG
GAAAGCGGGGGGGGTGACAAACGGATGTCGTTAAGGAATTTATGGTGTTT
TTTGTTTTGGGTTTTGAAGTGGTGTCGGTCGGCGCGTCAGACGGCGTGGT
GCCGGGTCTATGACGAATATTTATAATTTTTTACCGATGGTGTATGTAAT
TGAACATGTGCTAATGCTAGGTTGCTAATGCTAGGTTACCAAGGTTGCCC
ATCCTGCCGTAGCCAGTAGTCCTAGGGGGATCAAATTAATATATCCCTGG
TGAGGGAAAAGAGAAAACAGTTAAGTTTTAAAAAATAAAATGTATGTAGG
CTTGTTTTGTCTGTCGGGATTCTCAGAGCCCCTCCCCCCCCCTCCCCTCC
CAAACACCTCCCGCTAAGATGGTTCTCCCACGGTTTCCTTGAAGTTTCCT
TCCGTGGCGGGCTTACCTCGGCCGGCGTTATTTAGAAACCACCCGCCGAC
GGCGCCCCTTCCTATCCCCCCCTCTCTCTCTCCGCCTCCAGGCCCTGGGC
AAGGCGACCACCGTCCGTGATGGTTGGTGCGGACTAAAGGTTAACGCGGT
TAGGCATTACGGAAATGTGTTGGCAAATATTAACAGCCAGCTCCGCCCCA
AGCAAGAGCACAAGCTGGAGGCCGCAAAGGTAATGTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig93020:465..2355-

>mRNA_H-elongata_contig93020.16752.1 ID=mRNA_H-elongata_contig93020.16752.1|Name=mRNA_H-elongata_contig93020.16752.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig93020:465..2355- (Himanthalia elongata Himel1 dioecious)
CGCGCGCGCGTGTTCAGGTTTTCGGACCTGCGAAACGATTGGTTGGCGGG
AGGCGATGTGGCGCGGAGCACTCAGGCCAGCTATACGGTTCGAGTGGAGC
GGATACCCCGGGCGTTCCGCAGCCCCGCAATGCTGCAGAAGTTCTTCAGC
ACCCTTTTCCCGGGCCAGCGCGCGCGCGTGTTCAGGTTTTCGGACCTGCG
AAACGATTGGTTGGCGGGAGGCGATGTGGCGCGGAGCACTCAGGCCAGCT
ATACGGTTCGAGTGGAGCGGATACCCCGGGCGTTCCGCAGCCCCGCAATG
CTGCAGAAGTTCTTCAGCACCCTTTTCCCGGGCCAGATTTACAGCGCGAC
CGTATGTCTCGGCCTGGAGGAGCTGAAGCCGTTGACGCTCAAACGCGACA
AGTGTCTGCAAGCCATAGAGAGCGCTCTCATCCGAGAGTCGATTTACAGC
GCGACCGTATGTCTCGGCCTGGAGGAGCTGAAGCCGTTGACGCTCAAACG
CGACAAGTGTCTGCAAGCCATAGAGAGCGCTCTCATCCGAGAGTCGGCCC
TGGGCAAGGCGACCACCGTCCGTGATGGTTGGTGCGGACTAAAGGTTAAC
GCGGTTAGGCATTACGGAAATGTGTTGGCAAATATTAACAGCCAGCTCCG
CCCCAAGCAAGAGCACAAGCTGGAGGCCGCAAAGGTAATGTGGTGAGCCC
TGGGCAAGGCGACCACCGTCCGTGATGGTTGGTGCGGACTAAAGGTTAAC
GCGGTTAGGCATTACGGAAATGTGTTGGCAAATATTAACAGCCAGCTCCG
CCCCAAGCAAGAGCACAAGCTGGAGGCCGCAAAGGTAATGTGGTGA
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