mRNA_H-elongata_contig9300.16751.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig9300.16751.1
Unique Name	mRNA_H-elongata_contig9300.16751.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig9300.16751.1 vs. uniprot
Match: A0A6H5K9K6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K6_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.180e-22
Identity = 48/110 (43.64%), Postives = 70/110 (63.64%), Query Frame = 1

Query:    1 TKEIGLMFVRGSGLKFSVYADANYAVASNDRRSVFGVAVMLGNTAIGWKGSTQKCVKTVKCEAECVALCDAFKEALFMRAVLKFLQPELTGMRMNIFGDNEGATAIIDSP 330
            T ++G+ +VRGSGL   VY DA+YA     RRSV G+AV +G T +     TQ+ V     EAE +A  +  KEALF+RAVL F+ PE +G ++ +  DN+GA +++ +P
Sbjct:  201 TMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNP 310

[Close]

BLAST of mRNA_H-elongata_contig9300.16751.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 4.030e-22
Identity = 48/110 (43.64%), Postives = 70/110 (63.64%), Query Frame = 1

Query:    1 TKEIGLMFVRGSGLKFSVYADANYAVASNDRRSVFGVAVMLGNTAIGWKGSTQKCVKTVKCEAECVALCDAFKEALFMRAVLKFLQPELTGMRMNIFGDNEGATAIIDSP 330
            T ++G+ +VRGSGL   VY DA+YA     RRSV G+AV +G T +     TQ+ V     EAE +A  +  KEALF+RAVL F+ PE +G ++ +  DN+GA +++ +P
Sbjct: 1076 TMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNP 1185

[Close]

BLAST of mRNA_H-elongata_contig9300.16751.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 4.090e-22
Identity = 48/110 (43.64%), Postives = 70/110 (63.64%), Query Frame = 1

Query:    1 TKEIGLMFVRGSGLKFSVYADANYAVASNDRRSVFGVAVMLGNTAIGWKGSTQKCVKTVKCEAECVALCDAFKEALFMRAVLKFLQPELTGMRMNIFGDNEGATAIIDSP 330
            T ++G+ +VRGSGL   VY DA+YA     RRSV G+AV +G T +     TQ+ V     EAE +A  +  KEALF+RAVL F+ PE +G ++ +  DN+GA +++ +P
Sbjct: 1629 TMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNP 1738

[Close]

BLAST of mRNA_H-elongata_contig9300.16751.1 vs. uniprot
Match: A0A6H5KCR8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR8_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.470e-21
Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = 1

Query:    1 TKEIGLMFVRGSGLKFSVYADANYAVASNDRRSVFGVAVMLGNTAIGWKGSTQKCVKTVKCEAECVALCDAFKEALFMRAVLKFLQPELTGMRMNIFGDNEGATAIIDSP 330
            TK++G+ +VRGSGL   V+ D++YA ++ DRRS  G+AV +G T +     TQ        EAE +A  +  KEALF+R VL F+ PE +G  + +  DNEGA A++ +P
Sbjct:   15 TKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVREDNEGALALVQNP 124

[Close]

BLAST of mRNA_H-elongata_contig9300.16751.1 vs. uniprot
Match: A0A6H5KR64_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR64_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.710e-21
Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = 1

Query:    1 TKEIGLMFVRGSGLKFSVYADANYAVASNDRRSVFGVAVMLGNTAIGWKGSTQKCVKTVKCEAECVALCDAFKEALFMRAVLKFLQPELTGMRMNIFGDNEGATAIIDSP 330
            TK++G+ +VRGSGL   V+ D++YA ++ DRRS  G+AV +G T +     TQ        EAE +A  +  KEALF+R VL F+ PE +G  + +  DNEGA A++ +P
Sbjct:   42 TKDLGIAYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVREDNEGALALVQNP 151

[Close]

BLAST of mRNA_H-elongata_contig9300.16751.1 vs. uniprot
Match: A0A6H5K887_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K887_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 4.930e-21
Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = 1

Query:    1 TKEIGLMFVRGSGLKFSVYADANYAVASNDRRSVFGVAVMLGNTAIGWKGSTQKCVKTVKCEAECVALCDAFKEALFMRAVLKFLQPELTGMRMNIFGDNEGATAIIDSP 330
            TK++G+ +VRGSGL   V+ D++YA ++ DRRS  G+AV +G T +     TQ        EAE +A  +  KEALF+R VL F+ PE +G  + +  DNEGA A++ +P
Sbjct:   42 TKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVREDNEGALALVQNP 151

[Close]

BLAST of mRNA_H-elongata_contig9300.16751.1 vs. uniprot
Match: A0A6H5JRV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV3_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 6.190e-21
Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = 1

Query:    1 TKEIGLMFVRGSGLKFSVYADANYAVASNDRRSVFGVAVMLGNTAIGWKGSTQKCVKTVKCEAECVALCDAFKEALFMRAVLKFLQPELTGMRMNIFGDNEGATAIIDSP 330
            TK++G+ +VRGSGL   V+ D++YA ++ DRRS  G+AV +G T +     TQ        EAE +A  +  KEALF+R VL F+ PE +G  + +  DNEGA A++ +P
Sbjct:  110 TKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVREDNEGALALVQNP 219

[Close]

BLAST of mRNA_H-elongata_contig9300.16751.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.690e-20
Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = 1

Query:    1 TKEIGLMFVRGSGLKFSVYADANYAVASNDRRSVFGVAVMLGNTAIGWKGSTQKCVKTVKCEAECVALCDAFKEALFMRAVLKFLQPELTGMRMNIFGDNEGATAIIDSP 330
            TK++G+ +VRGSGL   V+ D++YA ++ DRRS  G+AV +G T +     TQ        EAE +A  +  KEALF+R VL F+ PE +G  + +  DNEGA A++ +P
Sbjct:  243 TKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVLEDNEGALALVQNP 352

[Close]

BLAST of mRNA_H-elongata_contig9300.16751.1 vs. uniprot
Match: A0A6H5KNB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNB1_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.090e-20
Identity = 48/110 (43.64%), Postives = 69/110 (62.73%), Query Frame = 1

Query:    1 TKEIGLMFVRGSGLKFSVYADANYAVASNDRRSVFGVAVMLGNTAIGWKGSTQKCVKTVKCEAECVALCDAFKEALFMRAVLKFLQPELTGMRMNIFGDNEGATAIIDSP 330
            TK++G+ +VRGSGL   V+ D++YA ++ DRRS  G+AV +G T +     TQ        EAE +A  +  KEALF+R VL F+ PE +G  M +  DNEGA A++ +P
Sbjct:  344 TKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGTTMRVREDNEGALALVQNP 453

[Close]

BLAST of mRNA_H-elongata_contig9300.16751.1 vs. uniprot
Match: A0A6H5JU54_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU54_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.780e-20
Identity = 48/110 (43.64%), Postives = 70/110 (63.64%), Query Frame = 1

Query:    1 TKEIGLMFVRGSGLKFSVYADANYAVASNDRRSVFGVAVMLGNTAIGWKGSTQKCVKTVKCEAECVALCDAFKEALFMRAVLKFLQPELTGMRMNIFGDNEGATAIIDSP 330
            TK++G+ +VRGSGL   V+ D++YA ++ DRRS  G+AV +G T +     TQ        EAE +A  +A KEALF+R VL F+ PE +G  + +  DNEGA A++ +P
Sbjct:  201 TKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAGGEAVKEALFVRGVLSFIAPETSGATIRVREDNEGALALVQNP 310

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig9300.16751.1 vs. uniprot

BLAST of mRNA_H-elongata_contig9300.16751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K9K6_9PHAE	1.180e-22	43.64	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JKS3_9PHAE	4.030e-22	43.64	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L175_9PHAE	4.090e-22	43.64	Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KCR8_9PHAE	1.470e-21	42.73	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KR64_9PHAE	2.710e-21	42.73	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K887_9PHAE	4.930e-21	42.73	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRV3_9PHAE	6.190e-21	42.73	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KCN6_9PHAE	1.690e-20	42.73	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KNB1_9PHAE	2.090e-20	43.64	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JU54_9PHAE	2.780e-20	43.64	Reverse transcriptase Ty1/copia-type domain-contai...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig9300	contig	H-elongata_contig9300:947..1276 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	64.7
Seed ortholog evalue	2.9e-08
Seed eggNOG ortholog	67593.Physo133508
EggNOG free text desc.	gag-polypeptide of LTR copia-type
EggNOG OGs	3QHHC@4776,COG2801@1,KOG0017@2759
COG Functional cat.	L
Best tax level	Peronosporales
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	1
Model size	330
Cds size	312
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931327.9533136-CDS-H-elongata_contig9300:946..1258	1622931327.9533136-CDS-H-elongata_contig9300:946..1258	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig9300 947..1258 -
1691679791.896255-CDS-H-elongata_contig9300:946..1258	1691679791.896255-CDS-H-elongata_contig9300:946..1258	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig9300 947..1258 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931327.9691372-UTR-H-elongata_contig9300:1258..1276	1622931327.9691372-UTR-H-elongata_contig9300:1258..1276	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig9300 1259..1276 -
1691679791.9080124-UTR-H-elongata_contig9300:1258..1276	1691679791.9080124-UTR-H-elongata_contig9300:1258..1276	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig9300 1259..1276 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig9300.16751.1	prot_H-elongata_contig9300.16751.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig9300 947..1258 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig9300:947..1276-
coding sequence from alignment at H-elongata_contig9300:947..1276-

protein sequence of mRNA_H-elongata_contig9300.16751.1

>prot_H-elongata_contig9300.16751.1 ID=prot_H-elongata_contig9300.16751.1|Name=mRNA_H-elongata_contig9300.16751.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MFVRGSGLKFSVYADANYAVASNDRRSVFGVAVMLGNTAIGWKGSTQKCV
KTVKCEAECVALCDAFKEALFMRAVLKFLQPELTGMRMNIFGDNEGATAI
IDSP

mRNA from alignment at H-elongata_contig9300:947..1276-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig9300.16751.1 ID=mRNA_H-elongata_contig9300.16751.1|Name=mRNA_H-elongata_contig9300.16751.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=330bp|location=Sequence derived from alignment at H-elongata_contig9300:947..1276- (Himanthalia elongata Himel1 dioecious)
ACTAAGGAGATTGGTTTGATGTTTGTGCGAGGTTCTGGCCTGAAGTTTTC
TGTGTACGCAGATGCTAATTACGCGGTGGCATCCAACGATCGAAGGTCCG
TGTTTGGTGTTGCAGTGATGTTGGGAAACACAGCCATTGGTTGGAAGGGT
TCTACGCAGAAATGCGTAAAGACTGTCAAGTGTGAAGCCGAGTGCGTTGC
TTTGTGTGATGCGTTCAAGGAGGCGCTCTTCATGAGAGCTGTCTTGAAAT
TTCTACAGCCTGAGCTGACCGGGATGAGAATGAATATTTTCGGTGATAAC
GAAGGTGCGACAGCAATCATAGACAGCCCG

Coding sequence (CDS) from alignment at H-elongata_contig9300:947..1276-

>mRNA_H-elongata_contig9300.16751.1 ID=mRNA_H-elongata_contig9300.16751.1|Name=mRNA_H-elongata_contig9300.16751.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig9300:947..1276- (Himanthalia elongata Himel1 dioecious)
ATGTTTGTGCGAGGTTCTGGCCTGAAGTTTTCTGTGTACGCAGATGCTAA
TTACGCGGTGGCATCCAACGATCGAAGGTCCGTGTTTGGTGTTGCAGTGA
TGTTGGGAAACACAGCCATTGGTTGGAAGGGTTCTACGCAGAAATGCGTA
AAGACTGTCAAGTGTGAAGCCGAGTGCGTTGCTTTGTGTGATGCGTTCAA
GGAGGCGCTCTTCATGAGAGCTGTCTTGAAATTTCTACAGCCTGAGCTGA
CCGGGATGAGAATGAATATTTTCGGTGATAACGAAGGTGCGACAGCAATC
ATAGACAGCCCGATGTTTGTGCGAGGTTCTGGCCTGAAGTTTTCTGTGTA
CGCAGATGCTAATTACGCGGTGGCATCCAACGATCGAAGGTCCGTGTTTG
GTGTTGCAGTGATGTTGGGAAACACAGCCATTGGTTGGAAGGGTTCTACG
CAGAAATGCGTAAAGACTGTCAAGTGTGAAGCCGAGTGCGTTGCTTTGTG
TGATGCGTTCAAGGAGGCGCTCTTCATGAGAGCTGTCTTGAAATTTCTAC
AGCCTGAGCTGACCGGGATGAGAATGAATATTTTCGGTGATAACGAAGGT
GCGACAGCAATCATAGACAGCCCG