mRNA_H-elongata_contig92953.16743.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig92953.16743.1
Unique NamemRNA_H-elongata_contig92953.16743.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92953.16743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig92953contigH-elongata_contig92953:622..1179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size559
Cds size558
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931327.0389872-CDS-H-elongata_contig92953:621..11791622931327.0389872-CDS-H-elongata_contig92953:621..1179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92953 622..1179 +
1691679791.4523735-CDS-H-elongata_contig92953:621..11791691679791.4523735-CDS-H-elongata_contig92953:621..1179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92953 622..1179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig92953.16743.1prot_H-elongata_contig92953.16743.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig92953 622..1179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig92953.16743.1

>prot_H-elongata_contig92953.16743.1 ID=prot_H-elongata_contig92953.16743.1|Name=mRNA_H-elongata_contig92953.16743.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
PYSSPLTLHNHSAPYVHLHEKLVFPDTSFAVLSSVMSRIQLFPNTSKLFR
AYYRPQTSQSSHTLKCHPQQPVTDELRRPYFGVSDIFSSRKFNSLLSFHH
TPFATGLAAAVYNMSLLDQGRLAVTRSSPETMTSKPIFWDMPRTSGSFHD
IISIHRRGSFLWCSDDYFSSVSLLAVATRFASRPSV
back to top

mRNA from alignment at H-elongata_contig92953:622..1179+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig92953.16743.1 ID=mRNA_H-elongata_contig92953.16743.1|Name=mRNA_H-elongata_contig92953.16743.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=558bp|location=Sequence derived from alignment at H-elongata_contig92953:622..1179+ (Himanthalia elongata Himel1 dioecious)
CCGTATTCCTCGCCCCTAACCCTCCACAACCATTCCGCCCCTTACGTCCA
TCTACACGAAAAGCTAGTCTTCCCTGACACCTCTTTTGCGGTCTTGTCGA
GTGTTATGTCCAGAATACAGCTTTTCCCGAACACGAGCAAATTATTTAGG
GCATATTATCGACCACAAACGAGTCAGTCCTCGCACACACTTAAGTGTCA
CCCTCAGCAGCCGGTGACTGATGAACTCCGGCGACCGTACTTCGGCGTTA
GTGATATTTTTTCGAGCAGAAAATTTAACTCCCTATTGAGCTTTCATCAT
ACGCCTTTTGCTACCGGACTTGCCGCTGCAGTATACAACATGTCCCTCTT
GGACCAAGGAAGACTGGCCGTTACGCGGAGTTCCCCGGAAACGATGACGT
CGAAGCCCATCTTCTGGGACATGCCGAGGACCAGCGGCTCGTTCCACGAT
ATTATTTCCATCCATCGCCGTGGTTCATTTCTTTGGTGCAGCGATGATTA
TTTCTCGTCTGTGAGCTTGCTCGCGGTCGCTACTCGCTTTGCGTCACGCC
CTTCTGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig92953:622..1179+

>mRNA_H-elongata_contig92953.16743.1 ID=mRNA_H-elongata_contig92953.16743.1|Name=mRNA_H-elongata_contig92953.16743.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1116bp|location=Sequence derived from alignment at H-elongata_contig92953:622..1179+ (Himanthalia elongata Himel1 dioecious)
CCGTATTCCTCGCCCCTAACCCTCCACAACCATTCCGCCCCTTACGTCCA
TCTACACGAAAAGCTAGTCTTCCCTGACACCTCTTTTGCGGTCTTGTCGA
GTGTTATGTCCAGAATACAGCTTTTCCCGAACACGAGCAAATTATTTAGG
GCATATTATCGACCACAAACGAGTCAGTCCTCGCACACACTTAAGTGTCA
CCCTCAGCAGCCGGTGACTGATGAACTCCGGCGACCGTACTTCGGCGTTA
GTGATATTTTTTCGAGCAGAAAATTTAACTCCCTATTGAGCTTTCATCAT
ACGCCTTTTGCTACCGGACTTGCCGCTGCAGTATACAACATGTCCCTCTT
GGACCAAGGAAGACTGGCCGTTACGCGGAGTTCCCCGGAAACGATGACGT
CGAAGCCCATCTTCTGGGACATGCCGAGGACCAGCGGCTCGTTCCACGAT
ATTATTTCCATCCATCGCCGTGGTTCATTTCTTTGGTGCAGCGATGATTA
TTTCTCGTCTGTGAGCTTGCTCGCGGTCGCTACTCGCTTTGCGTCACGCC
CTTCTGTGCCGTATTCCTCGCCCCTAACCCTCCACAACCATTCCGCCCCT
TACGTCCATCTACACGAAAAGCTAGTCTTCCCTGACACCTCTTTTGCGGT
CTTGTCGAGTGTTATGTCCAGAATACAGCTTTTCCCGAACACGAGCAAAT
TATTTAGGGCATATTATCGACCACAAACGAGTCAGTCCTCGCACACACTT
AAGTGTCACCCTCAGCAGCCGGTGACTGATGAACTCCGGCGACCGTACTT
CGGCGTTAGTGATATTTTTTCGAGCAGAAAATTTAACTCCCTATTGAGCT
TTCATCATACGCCTTTTGCTACCGGACTTGCCGCTGCAGTATACAACATG
TCCCTCTTGGACCAAGGAAGACTGGCCGTTACGCGGAGTTCCCCGGAAAC
GATGACGTCGAAGCCCATCTTCTGGGACATGCCGAGGACCAGCGGCTCGT
TCCACGATATTATTTCCATCCATCGCCGTGGTTCATTTCTTTGGTGCAGC
GATGATTATTTCTCGTCTGTGAGCTTGCTCGCGGTCGCTACTCGCTTTGC
GTCACGCCCTTCTGTG
back to top