mRNA_H-elongata_contig121862.1673.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121862.1673.1
Unique NamemRNA_H-elongata_contig121862.1673.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig121862.1673.1 vs. uniprot
Match: D7FPG7_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPG7_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.970e-18
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    1 MSHRKVRAMIPRAGFLTLIVMLVMTSSVI-AFKDPHNVFCGKDDCYKLLGLDRGAEKTEIKKAYREISKEVHPDKNESPEAHE 246
            M+ +++R M P+A F  + + +   S    AFKDPHN FCG+D+CY +LGL RGA+K +IKKAYR IS +VHPDKN +  A E
Sbjct:    1 MARKRMRVMSPQAIFFVVAIAVAAFSGFAEAFKDPHNKFCGEDECYAVLGLQRGADKADIKKAYRTISLDVHPDKNPTAAAKE 83          
BLAST of mRNA_H-elongata_contig121862.1673.1 vs. uniprot
Match: A0A835YSJ5_9STRA (Heat shock protein 40 like protein/ DnaJ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.680e-11
Identity = 28/58 (48.28%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   52 LIVMLVMTSSVIAFKDPHNVFCGKDDCYKLLGLDRGAEKTEIKKAYREISKEVHPDKN 225
            L+++L+  ++    KDPH +FCGKD+CY++L + R A K EI+++YR +S E HPDKN
Sbjct:    9 LLLVLLGFAAAAKIKDPHGIFCGKDNCYEVLAVPRNATKDEIRRSYRALSLENHPDKN 66          
BLAST of mRNA_H-elongata_contig121862.1673.1 vs. uniprot
Match: A0A7S1TDL4_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDL4_9RHOD)

HSP 1 Score: 62.8 bits (151), Expect = 8.860e-10
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 1
Query:   94 KDPHNVFCGKDDCYKLLGLDRGAEKTEIKKAYREISKEVHPDKNESPEAHE 246
            +DP   FCGKDDC+ LLGL+R A   E+K +YR +S ++HPD+N++ +A E
Sbjct:    5 RDPTEFFCGKDDCFSLLGLNRSATLAEVKSSYRRLSLQLHPDRNKADDAEE 55          
BLAST of mRNA_H-elongata_contig121862.1673.1 vs. uniprot
Match: A0A7S3VYZ7_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3VYZ7_9SPIT)

HSP 1 Score: 59.7 bits (143), Expect = 1.000e-9
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1
Query:   88 AFKDPHNVFCGKDDCYKLLGLDRGAEKTEIKKAYREISKEVHPDKNESPEA 240
            A +   +++CGKDDCY LL +DR A  TEIKKAYR+++ + HPDKN   +A
Sbjct:    2 AAQGASDLYCGKDDCYSLLDVDRAATSTEIKKAYRKLALKWHPDKNRGAKA 52          
BLAST of mRNA_H-elongata_contig121862.1673.1 vs. uniprot
Match: A0A4D9D8H7_9STRA (J domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8H7_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.200e-9
Identity = 29/75 (38.67%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   10 RKVRAMIPRAGFLTLIVMLVMTSSVIAFKDPHNVFCGKDDCYKLLGLDRGAEKTEIKKAYREISKEVHPDKNESP 234
            R   A   R+  L  ++++ +   + + KD HN+FCGK++CY LLG+ + AE   I++A+R++S   HPDK  SP
Sbjct:    5 RNYHAAFGRSRLLVAMILVSLFQGLQSLKDYHNIFCGKENCYDLLGVPQEAESPAIRRAFRQLSLVHHPDKGGSP 79          
BLAST of mRNA_H-elongata_contig121862.1673.1 vs. uniprot
Match: UPI0006B07742 (dnaJ homolog subfamily C member 25 homolog n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B07742)

HSP 1 Score: 61.2 bits (147), Expect = 3.930e-9
Identity = 24/68 (35.29%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   37 AGFLTLIVMLVMTSSVIAFKDPHNVFCGKDDCYKLLGLDRGAEKTEIKKAYREISKEVHPDKNESPEA 240
            +   T+I++L+M  ++  F +   ++CGK++CY +LG+ R + K++I +AYR ++++ HPD + S EA
Sbjct:   12 SNIFTIILVLIMVQAIHGFMELEGLYCGKENCYDVLGVPRESSKSDIARAYRRLARKYHPDMHRSTEA 79          
BLAST of mRNA_H-elongata_contig121862.1673.1 vs. uniprot
Match: A0A5J4Z9U7_PORPP (Chaperone protein dnaJ 50 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z9U7_PORPP)

HSP 1 Score: 59.3 bits (142), Expect = 1.740e-8
Identity = 30/70 (42.86%), Postives = 50/70 (71.43%), Query Frame = 1
Query:   40 GFLTLIVMLVMTSSVIAFKDPHNVFCGKD-DCYKLLGLDRGAEKTEIKKAYREISKEVHPDKNESPEAHE 246
            G  +++V++ + + V +    + +FCGK  +CY+LLG++RGAE  +IK+AYR++S E+HPDKN   +A E
Sbjct:   19 GIASVLVVIGLCAQVAS---AYEIFCGKKANCYELLGVERGAELRDIKRAYRKLSLELHPDKNPREDAAE 85          
BLAST of mRNA_H-elongata_contig121862.1673.1 vs. uniprot
Match: UPI001BB18367 (dnaJ homolog subfamily C member 25 homolog isoform X1 n=3 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB18367)

HSP 1 Score: 57.8 bits (138), Expect = 6.610e-8
Identity = 30/74 (40.54%), Postives = 47/74 (63.51%), Query Frame = 1
Query:   25 MIPRAGFLTLIVMLVMTSSVIAFKDPHNVFCGKDDCYKLLGLDRGAEKTEIKKAYREISKEVHPDKNESPEAHE 246
            M P +G + LI + V      A  D   ++CGK++CY +LG+ + AEK+EI K YR+++++ HPDKN+   A E
Sbjct:    1 MAPYSGIVILISVFVTFHCCDAMID--GLYCGKENCYDVLGVSKDAEKSEIAKNYRQLARKYHPDKNKDAGAEE 72          
BLAST of mRNA_H-elongata_contig121862.1673.1 vs. uniprot
Match: UPI00103DEA57 (dnaJ homolog subfamily C member 25 homolog n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103DEA57)

HSP 1 Score: 57.4 bits (137), Expect = 9.140e-8
Identity = 25/65 (38.46%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   52 LIVMLVMTSSVIAFKDP--HNVFCGKDDCYKLLGLDRGAEKTEIKKAYREISKEVHPDKNESPEA 240
            ++V ++  +++++  D     ++CGK +CY++LGL R A K+EI K YR+++K+ HPD +  PEA
Sbjct:    8 ILVAVIWQATIVSSHDHLLEGIYCGKQNCYEVLGLTREATKSEIGKTYRQLAKKFHPDLHRDPEA 72          
BLAST of mRNA_H-elongata_contig121862.1673.1 vs. uniprot
Match: T0SAV8_SAPDV (J domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0SAV8_SAPDV)

HSP 1 Score: 56.6 bits (135), Expect = 1.650e-7
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 1
Query:   82 VIAFKDPHNVFCGKDDCYKLLGLDRGAEKTEIKKAYREISKEVHPDKNESPEA 240
            V+A     N++CG+ +CY LLGL+R A  TE++K YR +S  +HPDKN S +A
Sbjct:    9 VLAVVHGRNMYCGQRECYDLLGLERTASATEVRKQYRALSLLMHPDKNPSADA 61          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121862.1673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPG7_ECTSI1.970e-1851.81Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A835YSJ5_9STRA4.680e-1148.28Heat shock protein 40 like protein/ DnaJ domain-co... [more]
A0A7S1TDL4_9RHOD8.860e-1050.98Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A7S3VYZ7_9SPIT1.000e-952.94Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A4D9D8H7_9STRA1.200e-938.67J domain-containing protein n=2 Tax=Monodopsidacea... [more]
UPI0006B077423.930e-935.29dnaJ homolog subfamily C member 25 homolog n=1 Tax... [more]
A0A5J4Z9U7_PORPP1.740e-842.86Chaperone protein dnaJ 50 n=1 Tax=Porphyridium pur... [more]
UPI001BB183676.610e-840.54dnaJ homolog subfamily C member 25 homolog isoform... [more]
UPI00103DEA579.140e-838.46dnaJ homolog subfamily C member 25 homolog n=1 Tax... [more]
T0SAV8_SAPDV1.650e-749.06J domain-containing protein n=1 Tax=Saprolegnia di... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121862contigH-elongata_contig121862:341..586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue7.4e-15
Seed eggNOG ortholog2880.D7FPG7
KEGG koko:K09515,ko:K19371
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0012505,GO:0016020,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0098827
EggNOG free text desc.DnaJ molecular chaperone homology domain
EggNOG OGsCOG0484@1,KOG0722@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Hectar predicted targeting categorysignal peptide
Exons1
Model size246
Cds size246
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929717.564528-CDS-H-elongata_contig121862:340..5861622929717.564528-CDS-H-elongata_contig121862:340..586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121862 341..586 +
1691679130.5956538-CDS-H-elongata_contig121862:340..5861691679130.5956538-CDS-H-elongata_contig121862:340..586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121862 341..586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121862.1673.1prot_H-elongata_contig121862.1673.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121862 341..586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121862.1673.1

>prot_H-elongata_contig121862.1673.1 ID=prot_H-elongata_contig121862.1673.1|Name=mRNA_H-elongata_contig121862.1673.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
MSHRKVRAMIPRAGFLTLIVMLVMTSSVIAFKDPHNVFCGKDDCYKLLGL
DRGAEKTEIKKAYREISKEVHPDKNESPEAHE
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mRNA from alignment at H-elongata_contig121862:341..586+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121862.1673.1 ID=mRNA_H-elongata_contig121862.1673.1|Name=mRNA_H-elongata_contig121862.1673.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at H-elongata_contig121862:341..586+ (Himanthalia elongata Himel1 dioecious)
ATGTCGCACAGAAAAGTAAGAGCGATGATTCCCCGAGCTGGATTTTTAAC CCTGATCGTGATGTTGGTGATGACATCGAGTGTCATAGCGTTCAAAGACC CCCACAACGTCTTCTGCGGCAAGGACGACTGCTATAAGTTGCTTGGCTTG GATAGGGGAGCAGAAAAAACAGAGATAAAGAAGGCCTACCGCGAGATCTC CAAAGAGGTGCATCCTGACAAGAACGAGAGCCCGGAAGCTCATGAA
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Coding sequence (CDS) from alignment at H-elongata_contig121862:341..586+

>mRNA_H-elongata_contig121862.1673.1 ID=mRNA_H-elongata_contig121862.1673.1|Name=mRNA_H-elongata_contig121862.1673.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig121862:341..586+ (Himanthalia elongata Himel1 dioecious)
ATGTCGCACAGAAAAGTAAGAGCGATGATTCCCCGAGCTGGATTTTTAAC
CCTGATCGTGATGTTGGTGATGACATCGAGTGTCATAGCGTTCAAAGACC
CCCACAACGTCTTCTGCGGCAAGGACGACTGCTATAAGTTGCTTGGCTTG
GATAGGGGAGCAGAAAAAACAGAGATAAAGAAGGCCTACCGCGAGATCTC
CAAAGAGGTGCATCCTGACAAGAACGAGAGCCCGGAAGCTCATGAAATGT
CGCACAGAAAAGTAAGAGCGATGATTCCCCGAGCTGGATTTTTAACCCTG
ATCGTGATGTTGGTGATGACATCGAGTGTCATAGCGTTCAAAGACCCCCA
CAACGTCTTCTGCGGCAAGGACGACTGCTATAAGTTGCTTGGCTTGGATA
GGGGAGCAGAAAAAACAGAGATAAAGAAGGCCTACCGCGAGATCTCCAAA
GAGGTGCATCCTGACAAGAACGAGAGCCCGGAAGCTCATGAA
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