mRNA_H-elongata_contig92627.16716.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig92627.16716.1
Unique NamemRNA_H-elongata_contig92627.16716.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig92627.16716.1 vs. uniprot
Match: A0A6H5JUI7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUI7_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 3.800e-35
Identity = 61/82 (74.39%), Postives = 71/82 (86.59%), Query Frame = 1 
Query:    1 SSTSLSAGYVPDGLSEQQWEDMKNKKATAAALKKKQVLSKNYESLDTFMKGMESGKRGHTFAKVD*TLTKLLPAGARGVKQN 246
            SST++SAGYVPDGL+ QQWEDMK +KA  AA +KK+V SK +E +DTFMKGME+GKRGHTFAKVD +L KL PAGARGVKQN
Sbjct:   32 SSTAVSAGYVPDGLTAQQWEDMKKEKAAKAAARKKEVASKKFEDIDTFMKGMEAGKRGHTFAKVDESLEKLPPAGARGVKQN 113
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BLAST of mRNA_H-elongata_contig92627.16716.1 vs. uniprot
Match: A0A835YGV9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGV9_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.130e-6
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:    1 SSTSLSAGYVPDGLSEQQWEDMKNKKATAAALKKKQVLSKNYESLDTFMKGMES---GK--RGHTFAKV 192
            SS++L AGYVPDGLSE +WE  K  KA AAA +K +  ++ +E L  +M   ++   G+   GH  AKV
Sbjct:   28 SSSALKAGYVPDGLSEAEWEAQKAAKAEAAAARKAKFAAQTFEDLSEWMTKRDAKFPGQIGAGHRMAKV 96
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BLAST of mRNA_H-elongata_contig92627.16716.1 vs. uniprot
Match: A0A7S2SUA3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUA3_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.400e-5
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:    4 STSLSAGYVPDGLSEQQWEDMKNKKATAAALKKKQVLSKNYESLDTFMKGMES------GKRGHTFAKV 192
            ST+LS GY+PDGLS+ +++ +K K+ +AA  +KK+     +E L  +++  +       GK GHTFAKV
Sbjct:   32 STTLSMGYIPDGLSQAEYDKLKKKEQSAAQERKKKFKFNGFEDLTDWVRARDKKFPNQPGK-GHTFAKV 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92627.16716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JUI7_9PHAE3.800e-3574.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YGV9_9STRA3.130e-644.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SUA3_9STRA1.400e-540.58Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig92627contigH-elongata_contig92627:2283..2528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size246
Cds size135
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig92627.16716.1prot_H-elongata_contig92627.16716.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig92627 2331..2465 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931323.6662776-UTR-H-elongata_contig92627:2282..23301622931323.6662776-UTR-H-elongata_contig92627:2282..2330Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig92627 2283..2330 -
1691679789.9697952-UTR-H-elongata_contig92627:2282..23301691679789.9697952-UTR-H-elongata_contig92627:2282..2330Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig92627 2283..2330 -
1622931323.7030108-UTR-H-elongata_contig92627:2465..25281622931323.7030108-UTR-H-elongata_contig92627:2465..2528Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig92627 2466..2528 -
1691679789.9907408-UTR-H-elongata_contig92627:2465..25281691679789.9907408-UTR-H-elongata_contig92627:2465..2528Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig92627 2466..2528 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931323.6825604-CDS-H-elongata_contig92627:2330..24651622931323.6825604-CDS-H-elongata_contig92627:2330..2465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92627 2331..2465 -
1691679789.979951-CDS-H-elongata_contig92627:2330..24651691679789.979951-CDS-H-elongata_contig92627:2330..2465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92627 2331..2465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig92627.16716.1

>prot_H-elongata_contig92627.16716.1 ID=prot_H-elongata_contig92627.16716.1|Name=mRNA_H-elongata_contig92627.16716.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
MKNKKATAAALKKKQVLSKNYESLDTFMKGMESGKRGHTFAKVD*
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mRNA from alignment at H-elongata_contig92627:2283..2528-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig92627.16716.1 ID=mRNA_H-elongata_contig92627.16716.1|Name=mRNA_H-elongata_contig92627.16716.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at H-elongata_contig92627:2283..2528- (Himanthalia elongata Himel1 dioecious)
TCGTCAACTTCGCTGTCGGCTGGGTATGTGCCGGACGGCCTCTCGGAGCA
GCAATGGGAAGACATGAAAAATAAGAAGGCAACCGCTGCGGCCTTAAAAA
AGAAGCAGGTTTTGTCGAAAAATTATGAGTCCCTCGACACGTTCATGAAG
GGGATGGAATCTGGCAAGAGGGGTCACACCTTCGCGAAGGTTGACTAAAC
GTTGACCAAGTTGCTCCCAGCTGGTGCTCGGGGTGTCAAGCAAAAC
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Coding sequence (CDS) from alignment at H-elongata_contig92627:2283..2528-

>mRNA_H-elongata_contig92627.16716.1 ID=mRNA_H-elongata_contig92627.16716.1|Name=mRNA_H-elongata_contig92627.16716.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig92627:2283..2528- (Himanthalia elongata Himel1 dioecious)
ATGAAAAATAAGAAGGCAACCGCTGCGGCCTTAAAAAAGAAGCAGGTTTT
GTCGAAAAATTATGAGTCCCTCGACACGTTCATGAAGGGGATGGAATCTG
GCAAGAGGGGTCACACCTTCGCGAAGGTTGACTAAATGAAAAATAAGAAG
GCAACCGCTGCGGCCTTAAAAAAGAAGCAGGTTTTGTCGAAAAATTATGA
GTCCCTCGACACGTTCATGAAGGGGATGGAATCTGGCAAGAGGGGTCACA
CCTTCGCGAAGGTTGACTAA
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