mRNA_H-elongata_contig92607.16714.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig92607.16714.1
Unique NamemRNA_H-elongata_contig92607.16714.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig92607.16714.1 vs. uniprot
Match: D7FGR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGR9_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 9.650e-24
Identity = 57/97 (58.76%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:    4 KFTVREPSEGSKNNMYYRTKTLKSQLLVFTLCLALVLDGCQLHFGVLAQDLKLSEAEARALLRELASLFLLSIGCTVNKTMAQLKLPLVFPRSRKAR 294
            KF+V E         Y RTKTLK+QL+V  LCLALVL+GC+L  GVLA+D +LS AEAR++LREL        GCT   T A LKLPL FPRSRKAR
Sbjct:  368 KFSVCEKKGAGGTANYVRTKTLKNQLVVHALCLALVLEGCRLEIGVLAEDFRLSTAEARSMLREL--------GCTATNTSAHLKLPLTFPRSRKAR 456
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92607.16714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FGR9_ECTSI9.650e-2458.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig92607contigH-elongata_contig92607:289..1109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue7.2e-20
Seed eggNOG ortholog2880.D7FGR9
Preferred namePOLR1E
KEGG rclassRC02795
KEGG koko:K03005
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00182
GOsGO:0000428,GO:0001179,GO:0001188,GO:0001650,GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006360,GO:0006361,GO:0006362,GO:0006363,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0008361,GO:0009058,GO:0009059,GO:0009303,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0022607,GO:0030880,GO:0031974,GO:0031981,GO:0032535,GO:0032774,GO:0032991,GO:0034062,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0090066,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.transcription by RNA polymerase I
EggNOG OGsKOG4183@1,KOG4183@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Hectar predicted targeting categorysignal anchor
Exons2
Model size303
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931323.5588505-CDS-H-elongata_contig92607:288..5101622931323.5588505-CDS-H-elongata_contig92607:288..510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92607 289..510 +
1691679789.9136999-CDS-H-elongata_contig92607:288..5101691679789.9136999-CDS-H-elongata_contig92607:288..510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92607 289..510 +
1622931323.5761077-CDS-H-elongata_contig92607:1028..11091622931323.5761077-CDS-H-elongata_contig92607:1028..1109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92607 1029..1109 +
1691679789.9280665-CDS-H-elongata_contig92607:1028..11091691679789.9280665-CDS-H-elongata_contig92607:1028..1109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92607 1029..1109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig92607.16714.1prot_H-elongata_contig92607.16714.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig92607 289..1109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig92607.16714.1

>prot_H-elongata_contig92607.16714.1 ID=prot_H-elongata_contig92607.16714.1|Name=mRNA_H-elongata_contig92607.16714.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
KKFTVREPSEGSKNNMYYRTKTLKSQLLVFTLCLALVLDGCQLHFGVLAQ
DLKLSEAEARALLRELASLFLLSIGCTVNKTMAQLKLPLVFPRSRKARNN
*
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mRNA from alignment at H-elongata_contig92607:289..1109+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig92607.16714.1 ID=mRNA_H-elongata_contig92607.16714.1|Name=mRNA_H-elongata_contig92607.16714.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=821bp|location=Sequence derived from alignment at H-elongata_contig92607:289..1109+ (Himanthalia elongata Himel1 dioecious)
AAGAAATTTACCGTGCGCGAGCCGTCGGAGGGAAGCAAGAACAACATGTA
CTATCGCACGAAAACGTTGAAGAGCCAGCTCCTCGTGTTCACACTTTGTC
TGGCCCTGGTGCTCGATGGGTGCCAGCTTCATTTCGGGGTGCTAGCTCAG
GACCTCAAGCTATCGGAGGCTGAAGCGCGGGCGTTGCTTCGAGAGCTGGC
AAGTCTGTTTTTATTGTCCATTGTGTCGCGATTTACTACGATATTGCTCT
ATATTGCTCTATATAGAGACGGGTAAGTAAAATTCCGGCCATAGCTGTTC
AAATGCGCGCCCCGTCTTGCCTTCACTAGCTAGAGTTTTTTTCCATTCGA
ATTTGGAGGCGTTTTGACGGTCCCACTGCGAGCGATGAGGTTGGAAACGC
GACCTTTTAAAATCACTTAAATTATCATTCATTCAAAACGGTGGGCGGCT
TGCTAAGTACTTGGGGTTTATACATGAGACAAGCGTGATCCGTCAGTTTT
TTCCGACATGAAAACTCTTTTGTCTAATCTAATATCCCTTTCCTAAAAAT
GGTGTGGGGAGGTATATGATAAAAAAAGTTATAAAGGGTTTTACCTAGAA
CGGTCTCGTAGTTTCGGAGGTTACAAACGAATACCCTCTGGCCGGAAGCC
CTTGCCGCTTCCCCTTCTAAAACGTCCGGGAACCCGCGCCCCGTCATCCT
CTTGGTGAACTCTGTTTTGCGGTGCCTGCTTTGTGTTTAGGGCTGCACGG
TAAACAAGACGATGGCTCAGCTGAAGCTACCGCTGGTTTTCCCCCGCTCT
CGGAAGGCGCGCAATAACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig92607:289..1109+

>mRNA_H-elongata_contig92607.16714.1 ID=mRNA_H-elongata_contig92607.16714.1|Name=mRNA_H-elongata_contig92607.16714.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig92607:289..1109+ (Himanthalia elongata Himel1 dioecious)
AAGAAATTTACCGTGCGCGAGCCGTCGGAGGGAAGCAAGAACAACATGTA
CTATCGCACGAAAACGTTGAAGAGCCAGCTCCTCGTGTTCACACTTTGTC
TGGCCCTGGTGCTCGATGGGTGCCAGCTTCATTTCGGGGTGCTAGCTCAG
GACCTCAAGCTATCGGAGGCTGAAGCGCGGGCGTTGCTTCGAGAGCTGGC
AAGTCTGTTTTTATTGTCCATTAAGAAATTTACCGTGCGCGAGCCGTCGG
AGGGAAGCAAGAACAACATGTACTATCGCACGAAAACGTTGAAGAGCCAG
CTCCTCGTGTTCACACTTTGTCTGGCCCTGGTGCTCGATGGGTGCCAGCT
TCATTTCGGGGTGCTAGCTCAGGACCTCAAGCTATCGGAGGCTGAAGCGC
GGGCGTTGCTTCGAGAGCTGGCAAGTCTGTTTTTATTGTCCATTGGCTGC
ACGGTAAACAAGACGATGGCTCAGCTGAAGCTACCGCTGGTTTTCCCCCG
CTCTCGGAAGGCGCGCAATAACTGAGGCTGCACGGTAAACAAGACGATGG
CTCAGCTGAAGCTACCGCTGGTTTTCCCCCGCTCTCGGAAGGCGCGCAAT
AACTGA
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