mRNA_H-elongata_contig92574.16711.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig92574.16711.1
Unique NamemRNA_H-elongata_contig92574.16711.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig92574.16711.1 vs. uniprot
Match: D7FYZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ0_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 5.780e-28
Identity = 62/136 (45.59%), Postives = 90/136 (66.18%), Query Frame = 3
Query:   36 SACFGVVQTIAKDSNYELKGELDRAKVELL-PKTKRRATSRSNDMLMWGELAMYKSPNEVKGALEADKVDDQYVRLIEVADNAQLRLMLEPGVELCGGDWALYTRVDPTYSIYWVRWDNRTSKADLDVVCDRSSAG 440
            +A F V Q ++K S+  L+G+    K+ L  PK   R++   + +L+WG+L +Y SPN    ++++D+VD+++VRL+ +A NAQL+LMLEPG E C  + ALY RVD T  IYW RW N+ SKADLD+ CD    G
Sbjct:  312 AASFAVAQAVSKTSHLVLQGDPSNPKLVLKKPKRSSRSSRDISGLLVWGDLIVYSSPNAASQSMDSDEVDEEFVRLLRIATNAQLQLMLEPGTERCTPEAALYLRVDKTCPIYWTRW-NKKSKADLDICCDIPQRG 446          
BLAST of mRNA_H-elongata_contig92574.16711.1 vs. uniprot
Match: A0A6H5JDB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB1_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 3.620e-25
Identity = 60/136 (44.12%), Postives = 89/136 (65.44%), Query Frame = 3
Query:   36 SACFGVVQTIAKDSNYELKGELDRAKVELL-PKTKRRATSRSNDMLMWGELAMYKSPNEVKGALEADKVDDQYVRLIEVADNAQLRLMLEPGVELCGGDWALYTRVDPTYSIYWVRWDNRTSKADLDVVCDRSSAG 440
            +A + V QTIAK ++  L+G+    K+ +  P+   +A    +D+ +WGEL +Y SP   K +L  ++VD++YVRL+ +A NAQL+LMLEPG E C  + ALY RV  T  ++WVRW+++T KADLD+ CD    G
Sbjct:  973 TASYTVAQTIAKTTHLTLQGDHHSPKLVMKKPRRASKAPKEVSDIPVWGELIVYPSPQAAKDSLTQEEVDEEYVRLLRIATNAQLQLMLEPGTERCTPEAALYLRVAATCPVFWVRWESKT-KADLDISCDIPQRG 1107          
BLAST of mRNA_H-elongata_contig92574.16711.1 vs. uniprot
Match: A0A6H5KW52_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW52_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.230e-23
Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = 3
Query:  126 PKTKRRATSRSNDMLMWGELAMYKSPNEVKGALEADKVDDQYVRLIEVADNAQLRLMLEPGVELCGGDWALYTRVDPTYSIYWVRWDNRTSKADLDVVCDRSSAG 440
            P+   +A    +D+ +WGEL +Y SP   K +L  ++VD++YVRL+ +A NAQL+LMLEPG E C  + ALY RV  T  ++WVRW+++T KADLD+ CD    G
Sbjct:    4 PRRASKAPKEVSDIPVWGELIVYPSPQAAKDSLTQEEVDEEYVRLLRIATNAQLQLMLEPGTERCTPEAALYLRVAATCPVFWVRWESKT-KADLDISCDIPQRG 107          
BLAST of mRNA_H-elongata_contig92574.16711.1 vs. uniprot
Match: A0A6H5KEI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI5_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.550e-23
Identity = 59/136 (43.38%), Postives = 88/136 (64.71%), Query Frame = 3
Query:   36 SACFGVVQTIAKDSNYELKGELDRAKVELL-PKTKRRATSRSNDMLMWGELAMYKSPNEVKGALEADKVDDQYVRLIEVADNAQLRLMLEPGVELCGGDWALYTRVDPTYSIYWVRWDNRTSKADLDVVCDRSSAG 440
            +A + V QTIAK ++  L+G+    K+ +  P+   +A    +D+ +WGEL +Y SP   K +L  ++VD++YVRL+ +A NAQL+LMLEPG E C  + ALY RV  T  ++WVR +++T KADLD+ CD    G
Sbjct:  367 TASYTVAQTIAKTTHLTLQGDHHSPKLVMKKPRRASKAPKEVSDIPVWGELIVYPSPQAAKDSLTQEEVDEEYVRLLRIATNAQLQLMLEPGTERCTPEAALYLRVAATCPVFWVRSESKT-KADLDISCDIPQRG 501          
BLAST of mRNA_H-elongata_contig92574.16711.1 vs. uniprot
Match: A0A6H5K708_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K708_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.140e-21
Identity = 58/136 (42.65%), Postives = 85/136 (62.50%), Query Frame = 3
Query:   36 SACFGVVQTIAKDSNYELKGELDRAKVELL-PKTKRRATSRSNDMLMWGELAMYKSPNEVKGALEADKVDDQYVRLIEVADNAQLRLMLEPGVELCGGDWALYTRVDPTYSIYWVRWDNRTSKADLDVVCDRSSAG 440
            +A F V QTIAK ++  L+G+    K+ +  P+   +A    +D+ +WGEL +Y SP   K +L  ++VD++YVRL+ +A NAQL+L LE G E C  + ALY RV  T  + WVR +++T KADLD+ CD    G
Sbjct:  381 TASFTVAQTIAKRTHLTLQGDHHSPKLVMKKPRRASKAPKEVSDIPVWGELIVYPSPQAAKDSLTQEEVDEEYVRLLRIATNAQLQLTLESGTERCTPEAALYLRVAATCPVLWVRSESKT-KADLDISCDIPQRG 515          
BLAST of mRNA_H-elongata_contig92574.16711.1 vs. uniprot
Match: A0A6H5K9C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9C3_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 4.280e-20
Identity = 55/136 (40.44%), Postives = 84/136 (61.76%), Query Frame = 3
Query:   36 SACFGVVQTIAKDSNYELKGELDRAKVELL-PKTKRRATSRSNDMLMWGELAMYKSPNEVKGALEADKVDDQYVRLIEVADNAQLRLMLEPGVELCGGDWALYTRVDPTYSIYWVRWDNRTSKADLDVVCDRSSAG 440
            +A + V QTIAK ++  L+G+    K+ +  P+   +A    +++ +WGE  +Y SP   K +L  ++VD++YVRL+ +A NAQL+LMLEPG E       LY RV  T  ++WVR +++T KADLD+ CD    G
Sbjct:   47 TASYTVAQTIAKTTHLTLQGDHHSPKLVMKKPRRASKAPKEVSNIPVWGESIVYPSPQAAKDSLTQEEVDEEYVRLLRIATNAQLQLMLEPGTE------PLYWRVAATCPVFWVRSESKT-KADLDISCDIPQRG 175          
BLAST of mRNA_H-elongata_contig92574.16711.1 vs. uniprot
Match: A0A6H5KE40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE40_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.290e-19
Identity = 51/111 (45.95%), Postives = 75/111 (67.57%), Query Frame = 3
Query:  117 ELLPKTKRRATS---RSNDMLMWGELAMYKSPNEVKGALEADKVDDQYVRLIEVADNAQLRLMLEPGVELCGGDWALYTRVDPTYSIYWVRWDNRTSKADLDVVCDRSSAG 440
            +L+ K  RRA+      +D+ +WGEL +Y SP   K +L  ++VD++YVRL+++A NAQL+LML+PG E C  + ALY RV  T  ++WVR +++T KADLD+ CD    G
Sbjct:  232 KLVTKKPRRASKVPKEVSDIPVWGELIVYPSPQAAKDSLTQEEVDEEYVRLLQIATNAQLQLMLKPGTERCTPEAALYLRVAATCPVFWVRSESKT-KADLDISCDIPQRG 341          
BLAST of mRNA_H-elongata_contig92574.16711.1 vs. uniprot
Match: A0A6H5JMW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW0_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.960e-17
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 3
Query:  222 LEADKVDDQYVRLIEVADNAQLRLMLEPGVELCGGDWALYTRVDPTYSIYWVRWDNRTSKADLDVVCDRSSAG 440
            +++D+VD+++VRL+ +A NAQL+LML+PG E C  + ALY RVD T  IYW RW N+ SKADLD+ CD    G
Sbjct:    1 MDSDEVDEEFVRLLRIATNAQLQLMLDPGTERCTPEAALYLRVDKTCPIYWTRW-NKKSKADLDICCDIPQRG 72          
BLAST of mRNA_H-elongata_contig92574.16711.1 vs. uniprot
Match: D8LJG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG8_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 6.320e-8
Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = 3
Query:  171 MWGELAMYKSPNEVKGALEADKVDDQYVRLIEVADNAQLRLMLEPGVELCGGDWALYTRVDPTYSIYWVRWDNRTSKADLDVVCD------RSSAGCLGDDAREGP 470
            +WG++ ++ SP E + +L AD+VD   VRLI VAD+AQL+ ML PG E       LY RV  T   Y+ RW++       +++ +      +S    L  DA + P
Sbjct:  662 IWGDMEIHLSPAEARESLRADRVDGA-VRLIRVADSAQLKQMLVPGKEFVAPGATLYMRVAKTCPAYYARWESSDPFTHHEILSEVPRDKKKSDTHALWFDAEDNP 766          
BLAST of mRNA_H-elongata_contig92574.16711.1 vs. uniprot
Match: A0A6H5KN26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN26_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.640e-7
Identity = 38/106 (35.85%), Postives = 56/106 (52.83%), Query Frame = 3
Query:  171 MWGELAMYKSPNEVKGALEADKVDDQYVRLIEVADNAQLRLMLEPGVELCGGDWALYTRVDPTYSIYWVRWDNRTSKADLDVVCD------RSSAGCLGDDAREGP 470
            +WG++ ++ SP E + +L AD VD   VRLI VAD+AQL+ ML PG E       LY RV  T   Y+ RW++       +++ +      +S    L  DA + P
Sbjct: 1065 IWGDMEIHLSPAEARESLRADPVDGA-VRLIRVADSAQLKQMLVPGKEFVAPGATLYMRVAKTCPAYYARWESSDPFTHHEILSEVPRDKKKSDTHALWFDAEDNP 1169          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92574.16711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FYZ0_ECTSI5.780e-2845.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDB1_9PHAE3.620e-2544.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW52_9PHAE1.230e-2347.62Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEI5_9PHAE1.550e-2343.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K708_9PHAE2.140e-2142.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9C3_9PHAE4.280e-2040.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE40_9PHAE2.290e-1945.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMW0_9PHAE1.960e-1754.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJG8_ECTSI6.320e-835.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN26_9PHAE1.640e-735.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig92574contigH-elongata_contig92574:1283..2567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size973
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig92574.16711.1prot_H-elongata_contig92574.16711.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig92574 1759..2070 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931323.2541413-UTR-H-elongata_contig92574:1282..13741622931323.2541413-UTR-H-elongata_contig92574:1282..1374Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig92574 1283..1374 +
1691679789.8122063-UTR-H-elongata_contig92574:1282..13741691679789.8122063-UTR-H-elongata_contig92574:1282..1374Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig92574 1283..1374 +
1622931323.2690892-UTR-H-elongata_contig92574:1686..17581622931323.2690892-UTR-H-elongata_contig92574:1686..1758Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig92574 1687..1758 +
1691679789.820989-UTR-H-elongata_contig92574:1686..17581691679789.820989-UTR-H-elongata_contig92574:1686..1758Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig92574 1687..1758 +
1622931323.2967236-UTR-H-elongata_contig92574:2070..25671622931323.2967236-UTR-H-elongata_contig92574:2070..2567Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig92574 2071..2567 +
1691679789.8394837-UTR-H-elongata_contig92574:2070..25671691679789.8394837-UTR-H-elongata_contig92574:2070..2567Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig92574 2071..2567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931323.2828383-CDS-H-elongata_contig92574:1758..20701622931323.2828383-CDS-H-elongata_contig92574:1758..2070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92574 1759..2070 +
1691679789.8302612-CDS-H-elongata_contig92574:1758..20701691679789.8302612-CDS-H-elongata_contig92574:1758..2070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92574 1759..2070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig92574.16711.1

>prot_H-elongata_contig92574.16711.1 ID=prot_H-elongata_contig92574.16711.1|Name=mRNA_H-elongata_contig92574.16711.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MLMWGELAMYKSPNEVKGALEADKVDDQYVRLIEVADNAQLRLMLEPGVE
LCGGDWALYTRVDPTYSIYWVRWDNRTSKADLDVVCDRSSAGCLGDDARE
GPP*
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mRNA from alignment at H-elongata_contig92574:1283..2567+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig92574.16711.1 ID=mRNA_H-elongata_contig92574.16711.1|Name=mRNA_H-elongata_contig92574.16711.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1285bp|location=Sequence derived from alignment at H-elongata_contig92574:1283..2567+ (Himanthalia elongata Himel1 dioecious)
AGATCACACAGAAATAAGGAGAGGGCTACCACTTTTCGGCATGCTTCGGA GTGGTACAGACCATCGCTAAGGACAGCAACTACGAGCTGAAGGTAACATC ACCAACATCGACAGAAGCGTTTCCCAATCGCTACTACCGACATCTACGTC GAACCTTTCCTTGCCGTGTAAATTGAAGATCCCTTTTCTCAATGAATCAA GCTGCTTTAGCTTCTTTTTCGTATGTGAGCTCTTTCATTAAAGCCCCCGA GGCGTTAATGTTTCTAGCAGATCTTCTATATTTTGCCGTACGTTCGATCG CCTGCCTTACTTAGTATATGTCAACACGCCCCTATACGACCGATTGCCTT ACATGACAGCGGCTAATATTTACGTCCTCGTTTTTCGCGTGCATGTAAAT ATAGGGTGAACTCGACAGGGCCAAGGTAGAGCTTCTGCCTAAAACGAAGA GGAGGGCAACGTCCAGGTCCAACGACATGCTCATGTGGGGTGAGCTCGCG ATGTACAAGTCTCCCAACGAAGTGAAGGGTGCACTGGAAGCCGACAAGGT GGACGACCAATATGTGCGCCTCATCGAAGTCGCCGACAACGCGCAGCTTC GGCTAATGCTCGAACCGGGGGTGGAGTTGTGCGGTGGTGATTGGGCCCTA TACACGCGGGTAGATCCGACGTACTCCATCTATTGGGTGCGATGGGACAA CCGTACGTCCAAAGCGGACCTTGACGTCGTCTGTGACCGTTCCTCAGCGG GGTGTTTGGGCGACGATGCTCGAGAGGGTCCACCTTAACGCCGACGGTAT AGGTGGCGTGAAGATCCGGTATGCGAGGAACAAGCCGTCGGAAACCTCAA CCAGTAGAAGTCTACGTGCCTTATTAGTCAGCACGACATACGGTCGAATC GTCGGGTCCGAAAACCTCCCGCGCCGTTCGCCTCGCGGTAAGGGGTCGGG AGACGAAGAAGAGGAAGAGGAAAAGGAGGATAATTAATTTCATTATAATT AGTAGAAGTAGTAGGAGGATAGTAGGAAAAAGTGCGTTGCCGCAGATCCA TCCGCGTCTTCTTGCTCGTGATTTGCGTTTTATACGTTTTGCATTCTCCC TTGATTATTCTAGAGGGTAACAACGACGGATTGAGCTCGCGTTACCTTTG TGGTATTGTTTAGCTTGCTTCCTCGTCCTTCTCGGTTGTTTCCATATTTG CTTTGCGAACGTCGTTTATTCGTACTACCGAGAGTGTACGGGACACGGGA GACTTACGGTAGGGAAGGGCTGTGCGCGATGTAGT
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Coding sequence (CDS) from alignment at H-elongata_contig92574:1283..2567+

>mRNA_H-elongata_contig92574.16711.1 ID=mRNA_H-elongata_contig92574.16711.1|Name=mRNA_H-elongata_contig92574.16711.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig92574:1283..2567+ (Himanthalia elongata Himel1 dioecious)
ATGCTCATGTGGGGTGAGCTCGCGATGTACAAGTCTCCCAACGAAGTGAA
GGGTGCACTGGAAGCCGACAAGGTGGACGACCAATATGTGCGCCTCATCG
AAGTCGCCGACAACGCGCAGCTTCGGCTAATGCTCGAACCGGGGGTGGAG
TTGTGCGGTGGTGATTGGGCCCTATACACGCGGGTAGATCCGACGTACTC
CATCTATTGGGTGCGATGGGACAACCGTACGTCCAAAGCGGACCTTGACG
TCGTCTGTGACCGTTCCTCAGCGGGGTGTTTGGGCGACGATGCTCGAGAG
GGTCCACCTTAAATGCTCATGTGGGGTGAGCTCGCGATGTACAAGTCTCC
CAACGAAGTGAAGGGTGCACTGGAAGCCGACAAGGTGGACGACCAATATG
TGCGCCTCATCGAAGTCGCCGACAACGCGCAGCTTCGGCTAATGCTCGAA
CCGGGGGTGGAGTTGTGCGGTGGTGATTGGGCCCTATACACGCGGGTAGA
TCCGACGTACTCCATCTATTGGGTGCGATGGGACAACCGTACGTCCAAAG
CGGACCTTGACGTCGTCTGTGACCGTTCCTCAGCGGGGTGTTTGGGCGAC
GATGCTCGAGAGGGTCCACCTTAA
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