mRNA_H-elongata_contig92574.16711.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig92574.16711.1 vs. uniprot
Match: D7FYZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ0_ECTSI) HSP 1 Score: 123 bits (309), Expect = 5.780e-28 Identity = 62/136 (45.59%), Postives = 90/136 (66.18%), Query Frame = 3
Query: 36 SACFGVVQTIAKDSNYELKGELDRAKVELL-PKTKRRATSRSNDMLMWGELAMYKSPNEVKGALEADKVDDQYVRLIEVADNAQLRLMLEPGVELCGGDWALYTRVDPTYSIYWVRWDNRTSKADLDVVCDRSSAG 440
+A F V Q ++K S+ L+G+ K+ L PK R++ + +L+WG+L +Y SPN ++++D+VD+++VRL+ +A NAQL+LMLEPG E C + ALY RVD T IYW RW N+ SKADLD+ CD G
Sbjct: 312 AASFAVAQAVSKTSHLVLQGDPSNPKLVLKKPKRSSRSSRDISGLLVWGDLIVYSSPNAASQSMDSDEVDEEFVRLLRIATNAQLQLMLEPGTERCTPEAALYLRVDKTCPIYWTRW-NKKSKADLDICCDIPQRG 446
BLAST of mRNA_H-elongata_contig92574.16711.1 vs. uniprot
Match: A0A6H5JDB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB1_9PHAE) HSP 1 Score: 116 bits (291), Expect = 3.620e-25 Identity = 60/136 (44.12%), Postives = 89/136 (65.44%), Query Frame = 3
Query: 36 SACFGVVQTIAKDSNYELKGELDRAKVELL-PKTKRRATSRSNDMLMWGELAMYKSPNEVKGALEADKVDDQYVRLIEVADNAQLRLMLEPGVELCGGDWALYTRVDPTYSIYWVRWDNRTSKADLDVVCDRSSAG 440
+A + V QTIAK ++ L+G+ K+ + P+ +A +D+ +WGEL +Y SP K +L ++VD++YVRL+ +A NAQL+LMLEPG E C + ALY RV T ++WVRW+++T KADLD+ CD G
Sbjct: 973 TASYTVAQTIAKTTHLTLQGDHHSPKLVMKKPRRASKAPKEVSDIPVWGELIVYPSPQAAKDSLTQEEVDEEYVRLLRIATNAQLQLMLEPGTERCTPEAALYLRVAATCPVFWVRWESKT-KADLDISCDIPQRG 1107
BLAST of mRNA_H-elongata_contig92574.16711.1 vs. uniprot
Match: A0A6H5KW52_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW52_9PHAE) HSP 1 Score: 105 bits (261), Expect = 1.230e-23 Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = 3
Query: 126 PKTKRRATSRSNDMLMWGELAMYKSPNEVKGALEADKVDDQYVRLIEVADNAQLRLMLEPGVELCGGDWALYTRVDPTYSIYWVRWDNRTSKADLDVVCDRSSAG 440
P+ +A +D+ +WGEL +Y SP K +L ++VD++YVRL+ +A NAQL+LMLEPG E C + ALY RV T ++WVRW+++T KADLD+ CD G
Sbjct: 4 PRRASKAPKEVSDIPVWGELIVYPSPQAAKDSLTQEEVDEEYVRLLRIATNAQLQLMLEPGTERCTPEAALYLRVAATCPVFWVRWESKT-KADLDISCDIPQRG 107
BLAST of mRNA_H-elongata_contig92574.16711.1 vs. uniprot
Match: A0A6H5KEI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI5_9PHAE) HSP 1 Score: 111 bits (277), Expect = 1.550e-23 Identity = 59/136 (43.38%), Postives = 88/136 (64.71%), Query Frame = 3
Query: 36 SACFGVVQTIAKDSNYELKGELDRAKVELL-PKTKRRATSRSNDMLMWGELAMYKSPNEVKGALEADKVDDQYVRLIEVADNAQLRLMLEPGVELCGGDWALYTRVDPTYSIYWVRWDNRTSKADLDVVCDRSSAG 440
+A + V QTIAK ++ L+G+ K+ + P+ +A +D+ +WGEL +Y SP K +L ++VD++YVRL+ +A NAQL+LMLEPG E C + ALY RV T ++WVR +++T KADLD+ CD G
Sbjct: 367 TASYTVAQTIAKTTHLTLQGDHHSPKLVMKKPRRASKAPKEVSDIPVWGELIVYPSPQAAKDSLTQEEVDEEYVRLLRIATNAQLQLMLEPGTERCTPEAALYLRVAATCPVFWVRSESKT-KADLDISCDIPQRG 501
BLAST of mRNA_H-elongata_contig92574.16711.1 vs. uniprot
Match: A0A6H5K708_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K708_9PHAE) HSP 1 Score: 105 bits (261), Expect = 2.140e-21 Identity = 58/136 (42.65%), Postives = 85/136 (62.50%), Query Frame = 3
Query: 36 SACFGVVQTIAKDSNYELKGELDRAKVELL-PKTKRRATSRSNDMLMWGELAMYKSPNEVKGALEADKVDDQYVRLIEVADNAQLRLMLEPGVELCGGDWALYTRVDPTYSIYWVRWDNRTSKADLDVVCDRSSAG 440
+A F V QTIAK ++ L+G+ K+ + P+ +A +D+ +WGEL +Y SP K +L ++VD++YVRL+ +A NAQL+L LE G E C + ALY RV T + WVR +++T KADLD+ CD G
Sbjct: 381 TASFTVAQTIAKRTHLTLQGDHHSPKLVMKKPRRASKAPKEVSDIPVWGELIVYPSPQAAKDSLTQEEVDEEYVRLLRIATNAQLQLTLESGTERCTPEAALYLRVAATCPVLWVRSESKT-KADLDISCDIPQRG 515
BLAST of mRNA_H-elongata_contig92574.16711.1 vs. uniprot
Match: A0A6H5K9C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9C3_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 4.280e-20 Identity = 55/136 (40.44%), Postives = 84/136 (61.76%), Query Frame = 3
Query: 36 SACFGVVQTIAKDSNYELKGELDRAKVELL-PKTKRRATSRSNDMLMWGELAMYKSPNEVKGALEADKVDDQYVRLIEVADNAQLRLMLEPGVELCGGDWALYTRVDPTYSIYWVRWDNRTSKADLDVVCDRSSAG 440
+A + V QTIAK ++ L+G+ K+ + P+ +A +++ +WGE +Y SP K +L ++VD++YVRL+ +A NAQL+LMLEPG E LY RV T ++WVR +++T KADLD+ CD G
Sbjct: 47 TASYTVAQTIAKTTHLTLQGDHHSPKLVMKKPRRASKAPKEVSNIPVWGESIVYPSPQAAKDSLTQEEVDEEYVRLLRIATNAQLQLMLEPGTE------PLYWRVAATCPVFWVRSESKT-KADLDISCDIPQRG 175
BLAST of mRNA_H-elongata_contig92574.16711.1 vs. uniprot
Match: A0A6H5KE40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE40_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 2.290e-19 Identity = 51/111 (45.95%), Postives = 75/111 (67.57%), Query Frame = 3
Query: 117 ELLPKTKRRATS---RSNDMLMWGELAMYKSPNEVKGALEADKVDDQYVRLIEVADNAQLRLMLEPGVELCGGDWALYTRVDPTYSIYWVRWDNRTSKADLDVVCDRSSAG 440
+L+ K RRA+ +D+ +WGEL +Y SP K +L ++VD++YVRL+++A NAQL+LML+PG E C + ALY RV T ++WVR +++T KADLD+ CD G
Sbjct: 232 KLVTKKPRRASKVPKEVSDIPVWGELIVYPSPQAAKDSLTQEEVDEEYVRLLQIATNAQLQLMLKPGTERCTPEAALYLRVAATCPVFWVRSESKT-KADLDISCDIPQRG 341
BLAST of mRNA_H-elongata_contig92574.16711.1 vs. uniprot
Match: A0A6H5JMW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW0_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 1.960e-17 Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 3
Query: 222 LEADKVDDQYVRLIEVADNAQLRLMLEPGVELCGGDWALYTRVDPTYSIYWVRWDNRTSKADLDVVCDRSSAG 440
+++D+VD+++VRL+ +A NAQL+LML+PG E C + ALY RVD T IYW RW N+ SKADLD+ CD G
Sbjct: 1 MDSDEVDEEFVRLLRIATNAQLQLMLDPGTERCTPEAALYLRVDKTCPIYWTRW-NKKSKADLDICCDIPQRG 72
BLAST of mRNA_H-elongata_contig92574.16711.1 vs. uniprot
Match: D8LJG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG8_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 6.320e-8 Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = 3
Query: 171 MWGELAMYKSPNEVKGALEADKVDDQYVRLIEVADNAQLRLMLEPGVELCGGDWALYTRVDPTYSIYWVRWDNRTSKADLDVVCD------RSSAGCLGDDAREGP 470
+WG++ ++ SP E + +L AD+VD VRLI VAD+AQL+ ML PG E LY RV T Y+ RW++ +++ + +S L DA + P
Sbjct: 662 IWGDMEIHLSPAEARESLRADRVDGA-VRLIRVADSAQLKQMLVPGKEFVAPGATLYMRVAKTCPAYYARWESSDPFTHHEILSEVPRDKKKSDTHALWFDAEDNP 766
BLAST of mRNA_H-elongata_contig92574.16711.1 vs. uniprot
Match: A0A6H5KN26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN26_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 1.640e-7 Identity = 38/106 (35.85%), Postives = 56/106 (52.83%), Query Frame = 3
Query: 171 MWGELAMYKSPNEVKGALEADKVDDQYVRLIEVADNAQLRLMLEPGVELCGGDWALYTRVDPTYSIYWVRWDNRTSKADLDVVCD------RSSAGCLGDDAREGP 470
+WG++ ++ SP E + +L AD VD VRLI VAD+AQL+ ML PG E LY RV T Y+ RW++ +++ + +S L DA + P
Sbjct: 1065 IWGDMEIHLSPAEARESLRADPVDGA-VRLIRVADSAQLKQMLVPGKEFVAPGATLYMRVAKTCPAYYARWESSDPFTHHEILSEVPRDKKKSDTHALWFDAEDNP 1169 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92574.16711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig92574.16711.1 >prot_H-elongata_contig92574.16711.1 ID=prot_H-elongata_contig92574.16711.1|Name=mRNA_H-elongata_contig92574.16711.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp MLMWGELAMYKSPNEVKGALEADKVDDQYVRLIEVADNAQLRLMLEPGVEback to top mRNA from alignment at H-elongata_contig92574:1283..2567+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig92574.16711.1 ID=mRNA_H-elongata_contig92574.16711.1|Name=mRNA_H-elongata_contig92574.16711.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1285bp|location=Sequence derived from alignment at H-elongata_contig92574:1283..2567+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig92574:1283..2567+ >mRNA_H-elongata_contig92574.16711.1 ID=mRNA_H-elongata_contig92574.16711.1|Name=mRNA_H-elongata_contig92574.16711.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig92574:1283..2567+ (Himanthalia elongata Himel1 dioecious)back to top |