prot_H-elongata_contig92571.16710.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig92571.16710.1
Unique Nameprot_H-elongata_contig92571.16710.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length62
Homology
BLAST of mRNA_H-elongata_contig92571.16710.1 vs. uniprot
Match: D7G490_ECTSI (Dhm exonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G490_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.390e-27
Identity = 48/58 (82.76%), Postives = 56/58 (96.55%), Query Frame = 0
Query:    3 GLEKHTSPVDNLYLDMNGIIHMCTHANDDEFVELNEKEMFRRIFIFTDRLYKLIRPRR 60
            GL +HT+P+DNLYLDMNG+IHMCTH NDDEF+ELNEKEMFRRIFIFTDR++KL+RPRR
Sbjct:  154 GLNEHTAPIDNLYLDMNGVIHMCTHHNDDEFIELNEKEMFRRIFIFTDRMFKLVRPRR 211          
BLAST of mRNA_H-elongata_contig92571.16710.1 vs. uniprot
Match: A0A835ZEW4_9STRA (5'-3' exoribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEW4_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.860e-20
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 0
Query:    3 GLEKHTSPVDNLYLDMNGIIHMCTHANDDEFVELNEKEMFRRIFIFTDRLYKLIRPRR 60
            G    T+P+DN YLDMNGIIHM TH N D F+ELNE+EMF+RIFI+TDRLYKL+ P R
Sbjct:   87 GFNTETAPIDNFYLDMNGIIHMATHNNADSFIELNEEEMFKRIFIYTDRLYKLVAPTR 144          
BLAST of mRNA_H-elongata_contig92571.16710.1 vs. uniprot
Match: A0A7S2LHT5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LHT5_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 7.730e-18
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 0
Query:   11 VDNLYLDMNGIIHMCTHANDDEFVELNEKEMFRRIFIFTDRLYKLIRP 58
            VDN YLDMNGIIH CTH N DE V LNE EMF++IF++ DRLYKL++P
Sbjct:   69 VDNFYLDMNGIIHPCTHGNSDELVVLNETEMFKKIFLYVDRLYKLVQP 116          
BLAST of mRNA_H-elongata_contig92571.16710.1 vs. uniprot
Match: W7TB93_9STRA (5-3 exoribonuclease 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TB93_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 9.530e-18
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 0
Query:    1 GTGLEKHTSPVDNLYLDMNGIIHMCTHANDDEFVELNEKEMFRRIFIFTDRLYKLIRPRR 60
            G  L   T+ V+N YLDMNGIIHMCTHAN +E + L+E++MF+RIF +TDRLYK++ P R
Sbjct:  119 GETLGTETAKVENFYLDMNGIIHMCTHANAEELIVLDERKMFQRIFTYTDRLYKIVAPTR 178          
BLAST of mRNA_H-elongata_contig92571.16710.1 vs. uniprot
Match: A0A7R9WBB9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WBB9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.530e-17
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = 0
Query:   11 VDNLYLDMNGIIHMCTHANDDEFVELNEKEMFRRIFIFTDRLYKLIRPRR 60
            VDN YLDMNGIIH CTH N +EFV L+E+EMF++IF + DRLY+++RPRR
Sbjct:   63 VDNFYLDMNGIIHPCTHGNREEFVVLDEREMFKKIFGYVDRLYRIVRPRR 112          
BLAST of mRNA_H-elongata_contig92571.16710.1 vs. uniprot
Match: A0A4D9CYF6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYF6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.320e-17
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 0
Query:    1 GTGLEKHTSPVDNLYLDMNGIIHMCTHANDDEFVELNEKEMFRRIFIFTDRLYKLIRPRR 60
            G  L   T+ V+N YLDMNGIIHMCTHAN +E + L+E++MF+RIF +TDRLYK++ P R
Sbjct:   61 GETLGTETAKVENFYLDMNGIIHMCTHANAEELIVLDERKMFQRIFTYTDRLYKIVAPTR 120          
BLAST of mRNA_H-elongata_contig92571.16710.1 vs. uniprot
Match: A0A7S2AHT5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AHT5_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.830e-17
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 0
Query:    3 GLEKHTSPVDNLYLDMNGIIHMCTHANDDEFVELNEKEMFRRIFIFTDRLYKLIRPRR 60
            GL   +  VDNLYLDMNGIIHMCTH N D  V L EKEM +RIF +TDR+YK+++P++
Sbjct:   87 GLGAQSQDVDNLYLDMNGIIHMCTHGNADSIVLLQEKEMLQRIFTYTDRIYKIVQPKK 144          
BLAST of mRNA_H-elongata_contig92571.16710.1 vs. uniprot
Match: A0A0G4EF62_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EF62_VITBC)

HSP 1 Score: 79.3 bits (194), Expect = 8.310e-16
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0
Query:   11 VDNLYLDMNGIIHMCTHAN-DDEFVELNEKEMFRRIFIFTDRLYKLIRPRR 60
            VD  YLDMNGIIHMCTHAN D +FVE +E+EMF RIF + DRLYK+IRPRR
Sbjct:   30 VDTFYLDMNGIIHMCTHANVDADFVEHDEEEMFHRIFAYIDRLYKIIRPRR 80          
BLAST of mRNA_H-elongata_contig92571.16710.1 vs. uniprot
Match: A0A5J4YW09_PORPP (5'-3' exoribonuclease n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YW09_PORPP)

HSP 1 Score: 78.2 bits (191), Expect = 2.120e-15
Identity = 32/49 (65.31%), Postives = 42/49 (85.71%), Query Frame = 0
Query:   12 DNLYLDMNGIIHMCTHANDDEFVELNEKEMFRRIFIFTDRLYKLIRPRR 60
            DN YLDMNGIIH CTH NDDE V +N+++MF+ +F +TDRLYK++RPR+
Sbjct:   28 DNFYLDMNGIIHQCTHPNDDEIVVMNQEQMFQAMFDYTDRLYKIVRPRK 76          
BLAST of mRNA_H-elongata_contig92571.16710.1 vs. uniprot
Match: A0A6U6L5K8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6L5K8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.890e-15
Identity = 33/50 (66.00%), Postives = 42/50 (84.00%), Query Frame = 0
Query:   11 VDNLYLDMNGIIHMCTHANDDEFVELNEKEMFRRIFIFTDRLYKLIRPRR 60
            VDN YLDMNGIIH CTH N +EF+ L+E EMF++IF + DRLY+++RPRR
Sbjct:   26 VDNFYLDMNGIIHPCTHGNREEFIVLDEAEMFKKIFGYVDRLYRIVRPRR 75          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92571.16710.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G490_ECTSI1.390e-2782.76Dhm exonuclease n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
A0A835ZEW4_9STRA3.860e-2068.975'-3' exoribonuclease n=1 Tax=Tribonema minus TaxI... [more]
A0A7S2LHT5_9STRA7.730e-1870.83Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
W7TB93_9STRA9.530e-1860.005-3 exoribonuclease 1 n=1 Tax=Nannochloropsis gadi... [more]
A0A7R9WBB9_9STRA1.530e-1768.00Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A4D9CYF6_9STRA3.320e-1760.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2AHT5_9STRA6.830e-1762.07Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0G4EF62_VITBC8.310e-1674.51Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A5J4YW09_PORPP2.120e-1565.315'-3' exoribonuclease n=1 Tax=Porphyridium purpure... [more]
A0A6U6L5K8_9STRA2.890e-1566.00Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004859Putative 5-3 exonucleasePFAMPF03159XRN_Ncoord: 7..61
e-value: 7.5E-14
score: 51.7
NoneNo IPR availableGENE3D3.40.50.12390coord: 3..62
e-value: 9.0E-17
score: 63.4
NoneNo IPR availablePANTHERPTHR12341:SF415'-3' EXORIBONUCLEASE 2coord: 9..61
IPR0270735'-3' exoribonucleasePANTHERPTHR123415'->3' EXORIBONUCLEASEcoord: 9..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig92571contigH-elongata_contig92571:123..308 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig92571.16710.1mRNA_H-elongata_contig92571.16710.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig92571 123..308 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig92571.16710.1 ID=prot_H-elongata_contig92571.16710.1|Name=mRNA_H-elongata_contig92571.16710.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
GTGLEKHTSPVDNLYLDMNGIIHMCTHANDDEFVELNEKEMFRRIFIFTD
RLYKLIRPRRFV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004859Put_53exo
IPR0270735_3_exoribonuclease