prot_H-elongata_contig92557.16709.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig92557.16709.1
Unique Nameprot_H-elongata_contig92557.16709.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length448
Homology
BLAST of mRNA_H-elongata_contig92557.16709.1 vs. uniprot
Match: D8LKU2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKU2_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 2.110e-64
Identity = 178/475 (37.47%), Postives = 221/475 (46.53%), Query Frame = 0
Query:    1 LTRPSTSSGFSALLAPGVPSFRANCAIDLLLSPGDLSFRCGNYPVSEVECG----RNGSEWPSTNAGAAKVDVGRGFKAADATSGQVGEGGEDLVDGITXXXXXXXXXXXXXXXXRRPESRIEIVNAASSASTLESRMGESYAREGETPPRGVGQGNATXXXXXXXXXXXXXXXXXXXXNDGRRRRVWVFHNYLAERGLKRQSLVGLSVWVTNATLSLLDPGDERVYLPRGNGGERTREAFFTGGGEDGNGDGAAFLFHRAFDYDTGLPVAHAEGNSSSLSAATSVLLLLGDGPDCGNNFPPITHAALFVLVAIELCFSFAMGVSCLVFSLNLVRKLREEVDPSAHGHYRYRICQPDS-------------------------QPSDGGSXXXXXXAFGSRPAVGRHHSRRPATAT----------EERGIGSLLRRNVLSRVDLYHDSDDENDGRSHDSEYLETVNMAPVSEAA 436
            L RP+TSSGFSALL+PG+  F+AN AI+ LLSPGD+SFRCG++PV ++ECG     +G  W     G   V+                  G+    GI                   P   +E +     A  LESR+  +     E P        A                     + G   RVWV HN+LA RGL+R SL GLSVW+ N+T SLL    E  Y  R   G R                   F FHRAFD  +GLP+   EGNSSSL+AA S+LLLLGD PD GN+FPPITHA LF+LVA+EL FSFAMGVSCL+F+++L+RKL +E  P+ H   R+ I    S                         +  DG          G      R   R  ++A           + RGIGSLL R   SRVDLY+D D   D       YLETV M+    AA
Sbjct:  343 LARPATSSGFSALLSPGLAPFKANAAIEALLSPGDVSFRCGDFPVMDLECGYGENASGGGW----GGLGVVEGXXXXXXXXXXXXXXXXAGDR---GIVTGSGDGGAAVLFSPAAAGPG--LEELGVEGDAGQLESRVANTRRTAAEVP--------AVPPPATDFSAEATTAARFDAEDGGSSSRVWVLHNFLAVRGLRRLSLNGLSVWLANSTSSLLGNPPEGEYEYRYYYGARADXXXXXXXXX------LLFRFHRAFDGFSGLPLPGPEGNSSSLAAAASILLLLGDAPDGGNDFPPITHATLFMLVAVELAFSFAMGVSCLLFNVSLLRKLAKEDQPTHHSQGRHSIGDGGSXXXXXXXXXXINGNIGNTAVGVARTKAEDGDRNEAQGERVGGAGDSWRRRGRGSSSAASAVTAGAEFGQGRGIGSLLSRRAGSRVDLYYDDDSGED-------YLETVAMSTRDTAA 787          
BLAST of mRNA_H-elongata_contig92557.16709.1 vs. uniprot
Match: A0A835Z1J8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1J8_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.740e-19
Identity = 64/154 (41.56%), Postives = 85/154 (55.19%), Query Frame = 0
Query:  182 RVWVFHNYLAERGLKRQSLVGLSVWVTNATLSLLDPGDERVYLPRGNGGERTREAFFTGGGEDGNGDGAAFLFHRAFDYDTGLPVAHAEGNSSSLSAATSVLLLLGDGPDCGNNFPPITHAALFVLVAIELCFSFAMGVSCLVFSLNLVRKLRE 335
            RV +    LA+RG   +   G+S W+ NAT  L        + PR              GG++G G G AF   RA+  DTG P     G SSSL+AA +++L+  DG    + +PPI+HA +F L+  EL F+FA+GVSCLV SL LVRKL E
Sbjct:  508 RVALLDAVLAQRGAAARGYPGVSGWLVNATTEL--------FCPRA-------------GGQEGQGGGYAFA--RAYRVDTGAPADGEYGVSSSLAAAAAIVLMREDGAQGPSEYPPISHAVMFGLMVSELVFAFAVGVSCLVLSLQLVRKLHE 638          
BLAST of mRNA_H-elongata_contig92557.16709.1 vs. uniprot
Match: A0A7S2SBS2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SBS2_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.080e-11
Identity = 50/157 (31.85%), Postives = 75/157 (47.77%), Query Frame = 0
Query:  184 WVFHNYLAERGLKRQSLVGLSVWVTNATLSLLD----PGDERVYLPRGNGGERTREAFFTGGGEDGNGDGAAFLFHRAFDYDTGLPVAHAEGNSSSLSAATSVLLLLGDGPDCGNNFPPITHAALFVLVAIELCFSFAMGVSCLVFSLNLVRKLREE 336
            WV HN L  RG  +     ++ WVTNATL L+     PG+                               +  F  A+   TG P+   E NSS+L+AAT+++LL  D P    +  P+ H  + VL+ IEL F+F +G++ +  S+ L++KLR E
Sbjct:  461 WVVHNLLVARGATQNGASAVADWVTNATLLLVAGRTWPGNTS--------------------------SSCSIAFSPAYSTATGAPLQAVEVNSSTLAAATTLVLLHADSPLPALDDSPLEHTTVVVLMVIELVFAFGVGLAIVSMSVALIQKLRSE 591          
BLAST of mRNA_H-elongata_contig92557.16709.1 vs. uniprot
Match: A0A7S1FUC9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUC9_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.330e-5
Identity = 37/110 (33.64%), Postives = 56/110 (50.91%), Query Frame = 0
Query:  232 RTREAFFTGGGEDGNGDGAAFLFHRAFDYDTGLPVAHAEGNSSSLSAATSVLLLLGDGPDCGNNFPPITHAALFVLVAIELCFSFAMGVSCLVFSLNLVRKLREEVDPSA 341
            R R      G  DG G+     F R +D DTG     + G  +  +AA  + +   DG     + PP+T   + VL+ +EL  +  +GVSC+V S+ L+RKLR++ D  A
Sbjct:  177 RNRTMSLVAGARDGEGE---VSFERFYDSDTGKERVSSWGRGAE-TAAVVLDMAKDDGVFSYRSAPPLTATWVMVLIVLELVIALGIGVSCVVLSMTLLRKLRDDDDARA 282          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92557.16709.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LKU2_ECTSI2.110e-6437.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z1J8_9STRA3.740e-1941.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SBS2_9STRA4.080e-1131.85Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1FUC9_9STRA1.330e-533.64Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..301
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 302..325
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 326..448
NoneNo IPR availableTMHMMTMhelixcoord: 303..325

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig92557contigH-elongata_contig92557:342..2179 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig92557.16709.1mRNA_H-elongata_contig92557.16709.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig92557 341..2179 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig92557.16709.1 ID=prot_H-elongata_contig92557.16709.1|Name=mRNA_H-elongata_contig92557.16709.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=448bp
LTRPSTSSGFSALLAPGVPSFRANCAIDLLLSPGDLSFRCGNYPVSEVEC
GRNGSEWPSTNAGAAKVDVGRGFKAADATSGQVGEGGEDLVDGITDGSAN
SSSNSNSNSSDRRPESRIEIVNAASSASTLESRMGESYAREGETPPRGVG
QGNATGGGNGGGEGAGGNDGGGRGQNDGRRRRVWVFHNYLAERGLKRQSL
VGLSVWVTNATLSLLDPGDERVYLPRGNGGERTREAFFTGGGEDGNGDGA
AFLFHRAFDYDTGLPVAHAEGNSSSLSAATSVLLLLGDGPDCGNNFPPIT
HAALFVLVAIELCFSFAMGVSCLVFSLNLVRKLREEVDPSAHGHYRYRIC
QPDSQPSDGGSGGGPGGAFGSRPAVGRHHSRRPATATEERGIGSLLRRNV
LSRVDLYHDSDDENDGRSHDSEYLETVNMAPVSEAAATVSSPVVSPNP
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