mRNA_H-elongata_contig92557.16709.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig92557.16709.1
Unique NamemRNA_H-elongata_contig92557.16709.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig92557.16709.1 vs. uniprot
Match: D8LKU2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKU2_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 2.110e-64
Identity = 178/475 (37.47%), Postives = 221/475 (46.53%), Query Frame = 1 
Query:    1 LTRPSTSSGFSALLAPGVPSFRANCAIDLLLSPGDLSFRCGNYPVSEVECG----RNGSEWPSTNAGAAKVDVGRGFKAADATSGQVGEGGEDLVDGITXXXXXXXXXXXXXXXXRRPESRIEIVNAASSASTLESRMGESYAREGETPPRGVGQGNATXXXXXXXXXXXXXXXXXXXXNDGRRRRVWVFHNYLAERGLKRQSLVGLSVWVTNATLSLLDPGDERVYLPRGNGGERTREAFFTGGGEDGNGDGAAFLFHRAFDYDTGLPVAHAEGNSSSLSAATSVLLLLGDGPDCGNNFPPITHAALFVLVAIELCFSFAMGVSCLVFSLNLVRKLREEVDPSAHGHYRYRICQPDS-------------------------QPSDGGSXXXXXXAFGSRPAVGRHHSRRPATAT----------EERGIGSLLRRNVLSRVDLYHDSDDENDGRSHDSEYLETVNMAPVSEAA 1308
            L RP+TSSGFSALL+PG+  F+AN AI+ LLSPGD+SFRCG++PV ++ECG     +G  W     G   V+                  G+    GI                   P   +E +     A  LESR+  +     E P        A                     + G   RVWV HN+LA RGL+R SL GLSVW+ N+T SLL    E  Y  R   G R                   F FHRAFD  +GLP+   EGNSSSL+AA S+LLLLGD PD GN+FPPITHA LF+LVA+EL FSFAMGVSCL+F+++L+RKL +E  P+ H   R+ I    S                         +  DG          G      R   R  ++A           + RGIGSLL R   SRVDLY+D D   D       YLETV M+    AA
Sbjct:  343 LARPATSSGFSALLSPGLAPFKANAAIEALLSPGDVSFRCGDFPVMDLECGYGENASGGGW----GGLGVVEGXXXXXXXXXXXXXXXXAGDR---GIVTGSGDGGAAVLFSPAAAGPG--LEELGVEGDAGQLESRVANTRRTAAEVP--------AVPPPATDFSAEATTAARFDAEDGGSSSRVWVLHNFLAVRGLRRLSLNGLSVWLANSTSSLLGNPPEGEYEYRYYYGARADXXXXXXXXX------LLFRFHRAFDGFSGLPLPGPEGNSSSLAAAASILLLLGDAPDGGNDFPPITHATLFMLVAVELAFSFAMGVSCLLFNVSLLRKLAKEDQPTHHSQGRHSIGDGGSXXXXXXXXXXINGNIGNTAVGVARTKAEDGDRNEAQGERVGGAGDSWRRRGRGSSSAASAVTAGAEFGQGRGIGSLLSRRAGSRVDLYYDDDSGED-------YLETVAMSTRDTAA 787
[Close]
BLAST of mRNA_H-elongata_contig92557.16709.1 vs. uniprot
Match: A0A835Z1J8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1J8_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.740e-19
Identity = 64/154 (41.56%), Postives = 85/154 (55.19%), Query Frame = 1 
Query:  544 RVWVFHNYLAERGLKRQSLVGLSVWVTNATLSLLDPGDERVYLPRGNGGERTREAFFTGGGEDGNGDGAAFLFHRAFDYDTGLPVAHAEGNSSSLSAATSVLLLLGDGPDCGNNFPPITHAALFVLVAIELCFSFAMGVSCLVFSLNLVRKLRE 1005
            RV +    LA+RG   +   G+S W+ NAT  L        + PR              GG++G G G AF   RA+  DTG P     G SSSL+AA +++L+  DG    + +PPI+HA +F L+  EL F+FA+GVSCLV SL LVRKL E
Sbjct:  508 RVALLDAVLAQRGAAARGYPGVSGWLVNATTEL--------FCPRA-------------GGQEGQGGGYAFA--RAYRVDTGAPADGEYGVSSSLAAAAAIVLMREDGAQGPSEYPPISHAVMFGLMVSELVFAFAVGVSCLVLSLQLVRKLHE 638
[Close]
BLAST of mRNA_H-elongata_contig92557.16709.1 vs. uniprot
Match: A0A7S2SBS2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SBS2_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.080e-11
Identity = 50/157 (31.85%), Postives = 75/157 (47.77%), Query Frame = 1 
Query:  550 WVFHNYLAERGLKRQSLVGLSVWVTNATLSLLD----PGDERVYLPRGNGGERTREAFFTGGGEDGNGDGAAFLFHRAFDYDTGLPVAHAEGNSSSLSAATSVLLLLGDGPDCGNNFPPITHAALFVLVAIELCFSFAMGVSCLVFSLNLVRKLREE 1008
            WV HN L  RG  +     ++ WVTNATL L+     PG+                               +  F  A+   TG P+   E NSS+L+AAT+++LL  D P    +  P+ H  + VL+ IEL F+F +G++ +  S+ L++KLR E
Sbjct:  461 WVVHNLLVARGATQNGASAVADWVTNATLLLVAGRTWPGNTS--------------------------SSCSIAFSPAYSTATGAPLQAVEVNSSTLAAATTLVLLHADSPLPALDDSPLEHTTVVVLMVIELVFAFGVGLAIVSMSVALIQKLRSE 591
[Close]
BLAST of mRNA_H-elongata_contig92557.16709.1 vs. uniprot
Match: A0A7S1FUC9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUC9_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.330e-5
Identity = 37/110 (33.64%), Postives = 56/110 (50.91%), Query Frame = 1 
Query:  694 RTREAFFTGGGEDGNGDGAAFLFHRAFDYDTGLPVAHAEGNSSSLSAATSVLLLLGDGPDCGNNFPPITHAALFVLVAIELCFSFAMGVSCLVFSLNLVRKLREEVDPSA 1023
            R R      G  DG G+     F R +D DTG     + G  +  +AA  + +   DG     + PP+T   + VL+ +EL  +  +GVSC+V S+ L+RKLR++ D  A
Sbjct:  177 RNRTMSLVAGARDGEGE---VSFERFYDSDTGKERVSSWGRGAE-TAAVVLDMAKDDGVFSYRSAPPLTATWVMVLIVLELVIALGIGVSCVVLSMTLLRKLRDDDDARA 282
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92557.16709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LKU2_ECTSI2.110e-6437.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z1J8_9STRA3.740e-1941.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SBS2_9STRA4.080e-1131.85Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1FUC9_9STRA1.330e-533.64Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig92557contigH-elongata_contig92557:341..2179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score236.9
Seed ortholog evalue1.9e-59
Seed eggNOG ortholog2880.D8LKU2
EggNOG OGs28RAS@1,2QXZV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1345
Cds size1344
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931323.148031-CDS-H-elongata_contig92557:341..7741622931323.148031-CDS-H-elongata_contig92557:341..774Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92557 342..774 -
1691679789.7769883-CDS-H-elongata_contig92557:341..7741691679789.7769883-CDS-H-elongata_contig92557:341..774Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92557 342..774 -
1622931323.1605773-CDS-H-elongata_contig92557:1268..21791622931323.1605773-CDS-H-elongata_contig92557:1268..2179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92557 1269..2179 -
1691679789.7873573-CDS-H-elongata_contig92557:1268..21791691679789.7873573-CDS-H-elongata_contig92557:1268..2179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92557 1269..2179 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig92557.16709.1prot_H-elongata_contig92557.16709.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig92557 342..2179 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig92557.16709.1

>prot_H-elongata_contig92557.16709.1 ID=prot_H-elongata_contig92557.16709.1|Name=mRNA_H-elongata_contig92557.16709.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=448bp
LTRPSTSSGFSALLAPGVPSFRANCAIDLLLSPGDLSFRCGNYPVSEVEC
GRNGSEWPSTNAGAAKVDVGRGFKAADATSGQVGEGGEDLVDGITDGSAN
SSSNSNSNSSDRRPESRIEIVNAASSASTLESRMGESYAREGETPPRGVG
QGNATGGGNGGGEGAGGNDGGGRGQNDGRRRRVWVFHNYLAERGLKRQSL
VGLSVWVTNATLSLLDPGDERVYLPRGNGGERTREAFFTGGGEDGNGDGA
AFLFHRAFDYDTGLPVAHAEGNSSSLSAATSVLLLLGDGPDCGNNFPPIT
HAALFVLVAIELCFSFAMGVSCLVFSLNLVRKLREEVDPSAHGHYRYRIC
QPDSQPSDGGSGGGPGGAFGSRPAVGRHHSRRPATATEERGIGSLLRRNV
LSRVDLYHDSDDENDGRSHDSEYLETVNMAPVSEAAATVSSPVVSPNP
back to top

mRNA from alignment at H-elongata_contig92557:341..2179-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig92557.16709.1 ID=mRNA_H-elongata_contig92557.16709.1|Name=mRNA_H-elongata_contig92557.16709.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1839bp|location=Sequence derived from alignment at H-elongata_contig92557:341..2179- (Himanthalia elongata Himel1 dioecious)
CTGACACGCCCTTCTACGAGCTCGGGGTTTTCCGCCCTCCTGGCGCCAGG
CGTGCCTTCTTTCCGTGCGAATTGCGCCATCGATTTGCTTCTCTCCCCCG
GAGACCTGTCGTTCCGGTGCGGAAACTACCCCGTGTCGGAGGTAGAGTGC
GGGCGAAATGGCAGCGAGTGGCCGTCCACCAACGCCGGCGCAGCCAAAGT
TGACGTAGGGCGAGGCTTCAAGGCGGCGGATGCCACGTCGGGACAGGTCG
GGGAAGGCGGAGAAGATCTGGTAGACGGTATCACGGACGGCAGCGCAAAC
AGCAGCAGTAATAGCAATAGCAATAGCAGCGACAGAAGGCCGGAGTCGAG
AATAGAAATCGTGAACGCCGCTTCTTCCGCCTCCACTTTAGAGTCAAGGA
TGGGGGAAAGCTACGCGCGGGAGGGTGAAACACCACCCCGGGGCGTCGGG
CAGGGGAACGCCACGGGGGGGGGCAATGGGGGAGGGGAGGGGGCGGGGGG
GAATGATGGGGGGGGTCGAGGCCAGAATGATGGTCGACGGCGGCGGGTGT
GGGTTTTCCACAACTACCTGGCGGAGCGCGGACTGAAAAGACAGTCGCTG
GTTGGGCTGTCCGTCTGGGTGACCAACGCGACGCTGTCTTTGCTCGATCC
AGGCGATGAAAGAGTTTATCTCCCCCGCGGCAACGGCGGAGAACGCACGA
GGGAGGCGTTTTTTACAGGGGGCGGCGAGGACGGGAACGGTGACGGCGCG
GCGTTCCTTTTCCACCGCGCGTTCGACTACGACACCGGTCTCCCCGTGGC
GCATGCAGAGGGAAACTCTTCTTCACTGTCGGCCGCGACGTCTGTGCTGC
TGCTGCTCGGGGACGGCCCGGACTGCGGGAACAATTTTCCGCCGATCACG
CACGCTGCTCTGTAAGTGTGCGTGTATGTGTGCATAAAAGAGATATATCT
GAGCTCGAAATAAAGAGAATAAAATGAGCCATTTAAATTTGTGAAGTTCT
GTGGTTTTGATTTACTTCGTGTAGAGAGCAAGTTAACCGCCCCTACCGAT
AGGAGTCAGTAGGTTGTGCGCGGCTTGTCTGATTGGACGAGGTGGGCGGA
GGGTTGAGTTGCGGTGGAGGGGGGGTATTTTTCTTTTCATACGACAAGCA
TGGACGTATACACCGAACCGCGACTTAAAACGCGCAATGCTGTCGTCGAT
CAATGCAGCAGCTCTGCTCTTTTTTGAGTGGGCCTACACATACGCTGCAT
GCACGCCTCGATGTGCACGCTTCGGCGAGCGCAAGTATTCCCTCCCCTCC
ACCTTGCCCTCTGCCGCAACACCCGTAATGGTTTTCCAACACTCACTTCA
CGACCCAGTATTTATTTTGTGTGTGTCTGAGCGATGCGTGGCGTGGTCTC
GACAGGTTCGTGCTGGTGGCGATCGAGCTGTGTTTCTCCTTCGCCATGGG
CGTCTCCTGTCTGGTCTTCAGCCTCAACCTTGTCCGCAAGCTCCGTGAGG
AGGTGGACCCAAGCGCGCATGGTCACTACCGATATCGCATCTGCCAACCC
GATAGCCAACCGAGCGACGGCGGCAGCGGTGGTGGGCCGGGTGGGGCGTT
CGGATCGCGGCCAGCCGTAGGCCGCCATCATTCGCGGAGGCCTGCGACCG
CCACCGAAGAGCGGGGGATCGGAAGCCTGCTGAGGAGAAACGTCCTCTCG
AGGGTGGACTTGTACCACGACAGTGACGACGAAAACGACGGCAGAAGCCA
CGACAGCGAGTACCTGGAGACGGTCAACATGGCACCGGTGTCGGAGGCGG
CGGCGACAGTATCTTCACCCGTGGTCTCGCCGAACCCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig92557:341..2179-

>mRNA_H-elongata_contig92557.16709.1 ID=mRNA_H-elongata_contig92557.16709.1|Name=mRNA_H-elongata_contig92557.16709.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2688bp|location=Sequence derived from alignment at H-elongata_contig92557:341..2179- (Himanthalia elongata Himel1 dioecious)
CTGACACGCCCTTCTACGAGCTCGGGGTTTTCCGCCCTCCTGGCGCCAGG
CGTGCCTTCTTTCCGTGCGAATTGCGCCATCGATTTGCTTCTCTCCCCCG
GAGACCTGTCGTTCCGGTGCGGAAACTACCCCGTGTCGGAGGTAGAGTGC
GGGCGAAATGGCAGCGAGTGGCCGTCCACCAACGCCGGCGCAGCCAAAGT
TGACGTAGGGCGAGGCTTCAAGGCGGCGGATGCCACGTCGGGACAGGTCG
GGGAAGGCGGAGAAGATCTGGTAGACGGTATCACGGACGGCAGCGCAAAC
AGCAGCAGTAATAGCAATAGCAATAGCAGCGACAGAAGGCCGGAGTCGAG
AATAGAAATCGTGAACGCCGCTTCTTCCGCCTCCACTTTAGAGTCAAGGA
TGGGGGAAAGCTACGCGCGGGAGGGTGAAACACCACCCCGGGGCGTCGGG
CAGGGGAACGCCACGGGGGGGGGCAATGGGGGAGGGGAGGGGGCGGGGGG
GAATGATGGGGGGGGTCGAGGCCAGAATGATGGTCGACGGCGGCGGGTGT
GGGTTTTCCACAACTACCTGGCGGAGCGCGGACTGAAAAGACAGTCGCTG
GTTGGGCTGTCCGTCTGGGTGACCAACGCGACGCTGTCTTTGCTCGATCC
AGGCGATGAAAGAGTTTATCTCCCCCGCGGCAACGGCGGAGAACGCACGA
GGGAGGCGTTTTTTACAGGGGGCGGCGAGGACGGGAACGGTGACGGCGCG
GCGTTCCTTTTCCACCGCGCGTTCGACTACGACACCGGTCTCCCCGTGGC
GCATGCAGAGGGAAACTCTTCTTCACTGTCGGCCGCGACGTCTGTGCTGC
TGCTGCTCGGGGACGGCCCGGACTGCGGGAACAATTTTCCGCCGATCACG
CACGCTGCTCTCTGACACGCCCTTCTACGAGCTCGGGGTTTTCCGCCCTC
CTGGCGCCAGGCGTGCCTTCTTTCCGTGCGAATTGCGCCATCGATTTGCT
TCTCTCCCCCGGAGACCTGTCGTTCCGGTGCGGAAACTACCCCGTGTCGG
AGGTAGAGTGCGGGCGAAATGGCAGCGAGTGGCCGTCCACCAACGCCGGC
GCAGCCAAAGTTGACGTAGGGCGAGGCTTCAAGGCGGCGGATGCCACGTC
GGGACAGGTCGGGGAAGGCGGAGAAGATCTGGTAGACGGTATCACGGACG
GCAGCGCAAACAGCAGCAGTAATAGCAATAGCAATAGCAGCGACAGAAGG
CCGGAGTCGAGAATAGAAATCGTGAACGCCGCTTCTTCCGCCTCCACTTT
AGAGTCAAGGATGGGGGAAAGCTACGCGCGGGAGGGTGAAACACCACCCC
GGGGCGTCGGGCAGGGGAACGCCACGGGGGGGGGCAATGGGGGAGGGGAG
GGGGCGGGGGGGAATGATGGGGGGGGTCGAGGCCAGAATGATGGTCGACG
GCGGCGGGTGTGGGTTTTCCACAACTACCTGGCGGAGCGCGGACTGAAAA
GACAGTCGCTGGTTGGGCTGTCCGTCTGGGTGACCAACGCGACGCTGTCT
TTGCTCGATCCAGGCGATGAAAGAGTTTATCTCCCCCGCGGCAACGGCGG
AGAACGCACGAGGGAGGCGTTTTTTACAGGGGGCGGCGAGGACGGGAACG
GTGACGGCGCGGCGTTCCTTTTCCACCGCGCGTTCGACTACGACACCGGT
CTCCCCGTGGCGCATGCAGAGGGAAACTCTTCTTCACTGTCGGCCGCGAC
GTCTGTGCTGCTGCTGCTCGGGGACGGCCCGGACTGCGGGAACAATTTTC
CGCCGATCACGCACGCTGCTCTGTTCGTGCTGGTGGCGATCGAGCTGTGT
TTCTCCTTCGCCATGGGCGTCTCCTGTCTGGTCTTCAGCCTCAACCTTGT
CCGCAAGCTCCGTGAGGAGGTGGACCCAAGCGCGCATGGTCACTACCGAT
ATCGCATCTGCCAACCCGATAGCCAACCGAGCGACGGCGGCAGCGGTGGT
GGGCCGGGTGGGGCGTTCGGATCGCGGCCAGCCGTAGGCCGCCATCATTC
GCGGAGGCCTGCGACCGCCACCGAAGAGCGGGGGATCGGAAGCCTGCTGA
GGAGAAACGTCCTCTCGAGGGTGGACTTGTACCACGACAGTGACGACGAA
AACGACGGCAGAAGCCACGACAGCGAGTACCTGGAGACGGTCAACATGGC
ACCGGTGTCGGAGGCGGCGGCGACAGTATCTTCACCCGTGGTCTCGCCGA
ACCCAGTTCGTGCTGGTGGCGATCGAGCTGTGTTTCTCCTTCGCCATGGG
CGTCTCCTGTCTGGTCTTCAGCCTCAACCTTGTCCGCAAGCTCCGTGAGG
AGGTGGACCCAAGCGCGCATGGTCACTACCGATATCGCATCTGCCAACCC
GATAGCCAACCGAGCGACGGCGGCAGCGGTGGTGGGCCGGGTGGGGCGTT
CGGATCGCGGCCAGCCGTAGGCCGCCATCATTCGCGGAGGCCTGCGACCG
CCACCGAAGAGCGGGGGATCGGAAGCCTGCTGAGGAGAAACGTCCTCTCG
AGGGTGGACTTGTACCACGACAGTGACGACGAAAACGACGGCAGAAGCCA
CGACAGCGAGTACCTGGAGACGGTCAACATGGCACCGGTGTCGGAGGCGG
CGGCGACAGTATCTTCACCCGTGGTCTCGCCGAACCCA
back to top