mRNA_H-elongata_contig92520.16705.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig92520.16705.1
Unique NamemRNA_H-elongata_contig92520.16705.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig92520.16705.1 vs. uniprot
Match: D7FT44_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT44_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 6.890e-14
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 1
Query:    1 VVIAERGKCTFTAKVRHAQEASAAGLLIVNNESGVVHPPGPDGKDL 138
            VVIA RG CT+T K R+AQEASA+ LL+VNNE G++HPPGPDG DL
Sbjct:   54 VVIATRGSCTYTNKARNAQEASASALLVVNNEQGLLHPPGPDGMDL 99          
BLAST of mRNA_H-elongata_contig92520.16705.1 vs. uniprot
Match: A0A482RZ19_9ARCH (PA domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZ19_9ARCH)

HSP 1 Score: 57.8 bits (138), Expect = 5.140e-8
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 1
Query:    1 VVIAERGKCTFTAKVRHAQEASAAGLLIVNNESGVVHPPGPDGKDLGERVNIL 159
            V++  RG CTF  K +HAQ  +A+ ++I+NNE G+ H PGPD  DL   V+ +
Sbjct:  131 VLLVHRGSCTFGTKAKHAQLTNASAIVIINNEPGIDHLPGPDAHDLTFSVSSI 183          
BLAST of mRNA_H-elongata_contig92520.16705.1 vs. uniprot
Match: A0A7S1TXM3_9STRA (Hypothetical protein n=6 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TXM3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.590e-7
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    1 VVIAERGKCTFTAKVRHAQEASAAGLLIVNNESGVVHPPGPDGKDLGERVNILS-----RYSAFVRRAG 192
            VV+A RG CTF  K +  +  + +GL+I+NNE G+ H PGPD  +L   V ++S     R  ++V  AG
Sbjct:  200 VVLAYRGTCTFGTKAKLVKNYTDSGLVIMNNEPGLFHLPGPDASELELFVGLISNSTGHRLMSYVEEAG 268          
BLAST of mRNA_H-elongata_contig92520.16705.1 vs. uniprot
Match: A0A7S2CH50_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CH50_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.900e-7
Identity = 24/54 (44.44%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    1 VVIAERGKCTFTAKVRHAQEASAAGLLIVNNESGVVHPPGPDGKDLGERVNILS 162
            +V+A+RG CTF  K ++   +  A L+IVNNE G +H PGPD  DL   V++++
Sbjct:  182 IVVAKRGTCTFGTKGKNVLASGGAALVIVNNEPGNMHAPGPDAHDLKLSVSMVA 235          
BLAST of mRNA_H-elongata_contig92520.16705.1 vs. uniprot
Match: A0A812RLD8_SYMMI (SPPL2 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RLD8_SYMMI)

HSP 1 Score: 53.1 bits (126), Expect = 8.150e-7
Identity = 22/55 (40.00%), Postives = 36/55 (65.45%), Query Frame = 1
Query:    1 VVIAERGKCTFTAKVRHAQEASAAGLLIVNNESGVVHPPGPDGKDLGERVNILSR 165
            VV+  RGKCT+  K  + ++ +A+ ++I+NNE G+ H PGPD  D+   V  +S+
Sbjct:   75 VVLVNRGKCTYGQKALNVKKTAASAVIIINNEPGIDHLPGPDAHDVQIAVMSISQ 129          
BLAST of mRNA_H-elongata_contig92520.16705.1 vs. uniprot
Match: A0A6S8CTY5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8CTY5_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.860e-5
Identity = 22/61 (36.07%), Postives = 36/61 (59.02%), Query Frame = 1
Query:    1 VVIAERGKCTFTAKVRHAQEA------SAAGLLIVNNESGVVHPPGPDGKDLGERVNILSR 165
            +++A+RG CTF  K    + A        + LL++NNE G +H PGPD  D+   ++++SR
Sbjct:  154 IILAKRGTCTFGTKANITERALGIDKSKQSALLLINNEPGSMHAPGPDAHDVQLSISMVSR 214          
BLAST of mRNA_H-elongata_contig92520.16705.1 vs. uniprot
Match: A0A0H5R4T0_9EUKA (PA domain-containing protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R4T0_9EUKA)

HSP 1 Score: 49.7 bits (117), Expect = 3.940e-5
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 1
Query:    1 VVIAERGKCTFTAKVRHAQEASAAGLLIVNNESGVVHPPGPDGKD 135
            VV+ +RG+CTF  KVR+AQEA AA +++VNNE  +      DG +
Sbjct:  134 VVLLKRGQCTFATKVRNAQEALAAAVIVVNNEDAIPKHMNSDGSN 178          
BLAST of mRNA_H-elongata_contig92520.16705.1 vs. uniprot
Match: A0A2V8AIB9_9BACT (Uncharacterized protein n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8AIB9_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 3.990e-5
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 1
Query:    1 VVIAERGKCTFTAKVRHAQEASAAGLLIVNNESGVVHPPGPDG 129
            +V+ +RG CTF+ K+R+AQ A AAG L+VNN +G     G DG
Sbjct:  426 IVVIDRGTCTFSTKIRNAQNAGAAGALVVNNVAGDPIAMGSDG 468          
BLAST of mRNA_H-elongata_contig92520.16705.1 vs. uniprot
Match: A0A2W0BZL1_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2W0BZL1_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 3.990e-5
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1
Query:    1 VVIAERGKCTFTAKVRHAQEASAAGLLIVNNESGVVHPPGPDG 129
            +V+ +RG CTF+ K+R+AQ A AAG+L+VNN +G     G DG
Sbjct:  428 MVVLDRGACTFSTKIRNAQAAGAAGVLVVNNAAGDPIAMGTDG 470          
BLAST of mRNA_H-elongata_contig92520.16705.1 vs. uniprot
Match: A0A7S3ZJ86_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJ86_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 7.270e-5
Identity = 25/60 (41.67%), Postives = 35/60 (58.33%), Query Frame = 1
Query:    4 VIAERGKCTFTAKVRHAQE-----ASAAGLLIVNNESGVVHPPGPDGKDLGERVNILSRY 168
            V+A+RG CTF  K  +  E     AS A LL+VNNE G  H PGPD  ++   V +++ +
Sbjct:  141 VVAKRGTCTFGTKATYLAESVEDNASLATLLLVNNEPGNQHAPGPDAHEVQASVAMVAEW 200          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92520.16705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FT44_ECTSI6.890e-1471.74PA domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A482RZ19_9ARCH5.140e-845.28PA domain-containing protein n=1 Tax=archaeon TaxI... [more]
A0A7S1TXM3_9STRA3.590e-740.58Hypothetical protein n=6 Tax=Phaeomonas parva TaxI... [more]
A0A7S2CH50_9STRA4.900e-744.44Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A812RLD8_SYMMI8.150e-740.00SPPL2 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A6S8CTY5_9STRA2.860e-536.07Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A0H5R4T0_9EUKA3.940e-548.89PA domain-containing protein (Fragment) n=1 Tax=Sp... [more]
A0A2V8AIB9_9BACT3.990e-551.16Uncharacterized protein n=2 Tax=Acidobacteria bact... [more]
A0A2W0BZL1_9BACT3.990e-551.16Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A7S3ZJ86_9STRA7.270e-541.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig92520contigH-elongata_contig92520:551..775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue2.7e-11
Seed eggNOG ortholog2880.D7FT44
Preferred nameSPPL2A
KEGG koko:K09596,ko:K09597,ko:K14212
GOsGO:0000323,GO:0001959,GO:0002682,GO:0003674,GO:0003824,GO:0004175,GO:0004190,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005798,GO:0005813,GO:0005815,GO:0005856,GO:0005886,GO:0006508,GO:0006509,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009966,GO:0010008,GO:0010646,GO:0010803,GO:0012505,GO:0015629,GO:0015630,GO:0016020,GO:0016021,GO:0016787,GO:0019538,GO:0023051,GO:0030176,GO:0030660,GO:0031090,GO:0031224,GO:0031227,GO:0031293,GO:0031410,GO:0031902,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0033619,GO:0042175,GO:0042500,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0048583,GO:0050776,GO:0050789,GO:0050794,GO:0060759,GO:0065007,GO:0070001,GO:0070011,GO:0070013,GO:0071458,GO:0071556,GO:0071704,GO:0071944,GO:0097708,GO:0098552,GO:0098553,GO:0098554,GO:0098562,GO:0098588,GO:0098805,GO:0098827,GO:0098852,GO:0140096,GO:1901564
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG2442@2759,KOG2443@1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931322.866084-CDS-H-elongata_contig92520:550..7751622931322.866084-CDS-H-elongata_contig92520:550..775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92520 551..775 -
1691679789.6503954-CDS-H-elongata_contig92520:550..7751691679789.6503954-CDS-H-elongata_contig92520:550..775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92520 551..775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig92520.16705.1prot_H-elongata_contig92520.16705.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig92520 551..775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig92520.16705.1

>prot_H-elongata_contig92520.16705.1 ID=prot_H-elongata_contig92520.16705.1|Name=mRNA_H-elongata_contig92520.16705.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
VVIAERGKCTFTAKVRHAQEASAAGLLIVNNESGVVHPPGPDGKDLGERV
NILSRYSAFVRRAGHISSIQHYMF*
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mRNA from alignment at H-elongata_contig92520:551..775-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig92520.16705.1 ID=mRNA_H-elongata_contig92520.16705.1|Name=mRNA_H-elongata_contig92520.16705.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig92520:551..775- (Himanthalia elongata Himel1 dioecious)
GTGGTGATCGCCGAGCGCGGGAAGTGTACCTTCACCGCAAAGGTCAGGCA CGCGCAAGAGGCCTCGGCGGCCGGCCTCCTGATCGTCAACAACGAGAGCG GGGTCGTGCATCCCCCCGGTCCAGATGGCAAAGACCTGGGTGAGCGCGTG AATATTCTCTCTCGCTACTCAGCCTTTGTAAGACGCGCGGGTCATATCTC CTCAATCCAGCATTACATGTTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig92520:551..775-

>mRNA_H-elongata_contig92520.16705.1 ID=mRNA_H-elongata_contig92520.16705.1|Name=mRNA_H-elongata_contig92520.16705.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig92520:551..775- (Himanthalia elongata Himel1 dioecious)
GTGGTGATCGCCGAGCGCGGGAAGTGTACCTTCACCGCAAAGGTCAGGCA
CGCGCAAGAGGCCTCGGCGGCCGGCCTCCTGATCGTCAACAACGAGAGCG
GGGTCGTGCATCCCCCCGGTCCAGATGGCAAAGACCTGGGTGAGCGCGTG
AATATTCTCTCTCGCTACTCAGCCTTTGTAAGACGCGCGGGTCATATCTC
CTCAATCCAGCATTACATGTTTTGAGTGGTGATCGCCGAGCGCGGGAAGT
GTACCTTCACCGCAAAGGTCAGGCACGCGCAAGAGGCCTCGGCGGCCGGC
CTCCTGATCGTCAACAACGAGAGCGGGGTCGTGCATCCCCCCGGTCCAGA
TGGCAAAGACCTGGGTGAGCGCGTGAATATTCTCTCTCGCTACTCAGCCT
TTGTAAGACGCGCGGGTCATATCTCCTCAATCCAGCATTACATGTTTTGA
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