mRNA_H-elongata_contig9251.16703.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9251.16703.1
Unique NamemRNA_H-elongata_contig9251.16703.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9251.16703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9251contigH-elongata_contig9251:415..1111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size256
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931322.7124338-CDS-H-elongata_contig9251:414..5461622931322.7124338-CDS-H-elongata_contig9251:414..546Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9251 415..546 +
1691679789.5755427-CDS-H-elongata_contig9251:414..5461691679789.5755427-CDS-H-elongata_contig9251:414..546Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9251 415..546 +
1622931322.7260547-CDS-H-elongata_contig9251:989..11091622931322.7260547-CDS-H-elongata_contig9251:989..1109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9251 990..1109 +
1691679789.5868912-CDS-H-elongata_contig9251:989..11091691679789.5868912-CDS-H-elongata_contig9251:989..1109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9251 990..1109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9251.16703.1prot_H-elongata_contig9251.16703.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9251 415..1109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9251.16703.1

>prot_H-elongata_contig9251.16703.1 ID=prot_H-elongata_contig9251.16703.1|Name=mRNA_H-elongata_contig9251.16703.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
DASCIDGSGHGAGGSSISKGFKPVNAGLSSGRGLSTPLGVGGSQPPQSGK
AATQLQEEANVFASRLVDVSGSAWCRHQRECRSG
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mRNA from alignment at H-elongata_contig9251:415..1111+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9251.16703.1 ID=mRNA_H-elongata_contig9251.16703.1|Name=mRNA_H-elongata_contig9251.16703.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=697bp|location=Sequence derived from alignment at H-elongata_contig9251:415..1111+ (Himanthalia elongata Himel1 dioecious)
GACGCTTCGTGCATCGATGGGAGCGGGCATGGTGCCGGTGGCAGCAGTAT
TAGCAAGGGGTTCAAGCCGGTGAACGCTGGGCTGAGCTCTGGTCGTGGCT
TGAGCACGCCGCTCGGCGTCGGTGGAAGCCAGGTGGAGCTATCGCAGCAG
CGTTAGCGTTATAGTCGATAGCGATGGCGGTCAACGATTCGCCCCTCTTA
CATCTATATGATTTATTGTTCGTGCGATTCTTTTCCGTCTGAGGCTATTA
TAAGTATATATATTTTCCCCCTGGTCCCGATATCGCGCTTCTGCTGCTTC
TGCTTCCTATAGCCACCCGAAGATTTTGCCCCTCTCCTCCTCGTTCTACG
CACGCATCGTGGAGAGCAGGATTTTTTTTCTTCCTTTTTTTTTTAATGAT
CCAATGGGTTGCCTCTCCTTTGCACCAAGAAATTTGCTGCCCTTTGAATT
ATGCGAACACAGTACAGTACAGTACCGTGCCATAGTGTATTATACTATAC
TATTAACATCTGAATAATCTGATAAGCGCGCGCTGAACTACCCCTTTTTT
TCACAAACACTCCGGGCGAGCGCAGCCGCCGCAATCTGGCAAGGCGGCGA
CGCAGTTGCAAGAGGAGGCGAACGTTTTTGCGTCGCGACTCGTGGATGTT
TCTGGGTCAGCCTGGTGTCGACACCAACGCGAATGTAGATCTGGCAT
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Coding sequence (CDS) from alignment at H-elongata_contig9251:415..1111+

>mRNA_H-elongata_contig9251.16703.1 ID=mRNA_H-elongata_contig9251.16703.1|Name=mRNA_H-elongata_contig9251.16703.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig9251:415..1111+ (Himanthalia elongata Himel1 dioecious)
GACGCTTCGTGCATCGATGGGAGCGGGCATGGTGCCGGTGGCAGCAGTAT
TAGCAAGGGGTTCAAGCCGGTGAACGCTGGGCTGAGCTCTGGTCGTGGCT
TGAGCACGCCGCTCGGCGTCGGTGGAAGCCAGGACGCTTCGTGCATCGAT
GGGAGCGGGCATGGTGCCGGTGGCAGCAGTATTAGCAAGGGGTTCAAGCC
GGTGAACGCTGGGCTGAGCTCTGGTCGTGGCTTGAGCACGCCGCTCGGCG
TCGGTGGAAGCCAGCCGCCGCAATCTGGCAAGGCGGCGACGCAGTTGCAA
GAGGAGGCGAACGTTTTTGCGTCGCGACTCGTGGATGTTTCTGGGTCAGC
CTGGTGTCGACACCAACGCGAATGTAGATCTGGCCCGCCGCAATCTGGCA
AGGCGGCGACGCAGTTGCAAGAGGAGGCGAACGTTTTTGCGTCGCGACTC
GTGGATGTTTCTGGGTCAGCCTGGTGTCGACACCAACGCGAATGTAGATC
TGGC
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