mRNA_H-elongata_contig92504.16702.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig92504.16702.1
Unique NamemRNA_H-elongata_contig92504.16702.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92504.16702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig92504contigH-elongata_contig92504:1628..2380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size753
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig92504.16702.1prot_H-elongata_contig92504.16702.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig92504 1856..2353 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931322.6395957-UTR-H-elongata_contig92504:1627..18551622931322.6395957-UTR-H-elongata_contig92504:1627..1855Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig92504 1628..1855 +
1691679789.5426543-UTR-H-elongata_contig92504:1627..18551691679789.5426543-UTR-H-elongata_contig92504:1627..1855Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig92504 1628..1855 +
1622931322.6699984-UTR-H-elongata_contig92504:2353..23801622931322.6699984-UTR-H-elongata_contig92504:2353..2380Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig92504 2354..2380 +
1691679789.5646467-UTR-H-elongata_contig92504:2353..23801691679789.5646467-UTR-H-elongata_contig92504:2353..2380Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig92504 2354..2380 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931322.6532204-CDS-H-elongata_contig92504:1855..23531622931322.6532204-CDS-H-elongata_contig92504:1855..2353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92504 1856..2353 +
1691679789.553365-CDS-H-elongata_contig92504:1855..23531691679789.553365-CDS-H-elongata_contig92504:1855..2353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92504 1856..2353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig92504.16702.1

>prot_H-elongata_contig92504.16702.1 ID=prot_H-elongata_contig92504.16702.1|Name=mRNA_H-elongata_contig92504.16702.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
MIFLARAKVMVTTKLVLERFSFSLCLYPPVALPRRPSSLRFGYYHGSFPT
WFQFPYTLSLYWVCRVSRRFWRSLKDTKKGKMGWAIRRRGGQWAGGGFVL
YGKQVQQRHIDVICGYRGQKVWRRVAGVPKRARVGGFLRLLGRLRCARLF
GCWHLWYRRCRDCLP*
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mRNA from alignment at H-elongata_contig92504:1628..2380+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig92504.16702.1 ID=mRNA_H-elongata_contig92504.16702.1|Name=mRNA_H-elongata_contig92504.16702.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=753bp|location=Sequence derived from alignment at H-elongata_contig92504:1628..2380+ (Himanthalia elongata Himel1 dioecious)
TGGACAGGGTTAAGCGGGACCTGAAAGGAGACAAGGATTCGGGGGTGGGG
AGAGCGACGCGACGATGCGAGAAAGGAAAGGGGGTGAAGGATGTTGTTCT
GAGGCGCCCATGGATGTAGTGCGCGGGAAGAGAGATATCTATGAAGGAGG
GGAGGGGGGAGCAAAACACGCCTGTCTGTGATTTTGCGCTCGAGCCGCTG
CCTCTGCCAGTCATTCCTGACTCCGTTGATGATTTTTCTGGCTAGGGCGA
AGGTGATGGTGACCACGAAGCTTGTGCTTGAACGGTTCTCTTTCTCTCTC
TGCCTCTACCCCCCCGTCGCCCTTCCCCGTCGCCCTTCTTCTCTGCGTTT
TGGTTATTATCATGGGTCATTTCCAACTTGGTTTCAGTTCCCGTACACTC
TCTCTCTTTATTGGGTTTGTAGAGTGTCGAGGCGTTTCTGGCGTAGCTTA
AAGGACACTAAGAAGGGGAAGATGGGGTGGGCGATTCGGAGGAGAGGAGG
GCAGTGGGCGGGTGGAGGCTTCGTGTTGTACGGAAAGCAGGTGCAGCAGC
GGCATATTGATGTTATCTGCGGCTATCGGGGGCAAAAGGTATGGAGGCGT
GTGGCGGGAGTTCCCAAGAGAGCTAGGGTTGGTGGCTTTTTGCGGCTGCT
CGGGAGACTGCGGTGTGCGCGGTTGTTTGGTTGTTGGCATTTGTGGTATC
GTCGATGTCGCGACTGCCTACCGTAGGCAGCTCGGTCGAATGACATGGTG
GGC
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Coding sequence (CDS) from alignment at H-elongata_contig92504:1628..2380+

>mRNA_H-elongata_contig92504.16702.1 ID=mRNA_H-elongata_contig92504.16702.1|Name=mRNA_H-elongata_contig92504.16702.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig92504:1628..2380+ (Himanthalia elongata Himel1 dioecious)
ATGATTTTTCTGGCTAGGGCGAAGGTGATGGTGACCACGAAGCTTGTGCT
TGAACGGTTCTCTTTCTCTCTCTGCCTCTACCCCCCCGTCGCCCTTCCCC
GTCGCCCTTCTTCTCTGCGTTTTGGTTATTATCATGGGTCATTTCCAACT
TGGTTTCAGTTCCCGTACACTCTCTCTCTTTATTGGGTTTGTAGAGTGTC
GAGGCGTTTCTGGCGTAGCTTAAAGGACACTAAGAAGGGGAAGATGGGGT
GGGCGATTCGGAGGAGAGGAGGGCAGTGGGCGGGTGGAGGCTTCGTGTTG
TACGGAAAGCAGGTGCAGCAGCGGCATATTGATGTTATCTGCGGCTATCG
GGGGCAAAAGGTATGGAGGCGTGTGGCGGGAGTTCCCAAGAGAGCTAGGG
TTGGTGGCTTTTTGCGGCTGCTCGGGAGACTGCGGTGTGCGCGGTTGTTT
GGTTGTTGGCATTTGTGGTATCGTCGATGTCGCGACTGCCTACCGTAGAT
GATTTTTCTGGCTAGGGCGAAGGTGATGGTGACCACGAAGCTTGTGCTTG
AACGGTTCTCTTTCTCTCTCTGCCTCTACCCCCCCGTCGCCCTTCCCCGT
CGCCCTTCTTCTCTGCGTTTTGGTTATTATCATGGGTCATTTCCAACTTG
GTTTCAGTTCCCGTACACTCTCTCTCTTTATTGGGTTTGTAGAGTGTCGA
GGCGTTTCTGGCGTAGCTTAAAGGACACTAAGAAGGGGAAGATGGGGTGG
GCGATTCGGAGGAGAGGAGGGCAGTGGGCGGGTGGAGGCTTCGTGTTGTA
CGGAAAGCAGGTGCAGCAGCGGCATATTGATGTTATCTGCGGCTATCGGG
GGCAAAAGGTATGGAGGCGTGTGGCGGGAGTTCCCAAGAGAGCTAGGGTT
GGTGGCTTTTTGCGGCTGCTCGGGAGACTGCGGTGTGCGCGGTTGTTTGG
TTGTTGGCATTTGTGGTATCGTCGATGTCGCGACTGCCTACCGTAG
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