mRNA_H-elongata_contig12184.1670.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12184.1670.1
Unique NamemRNA_H-elongata_contig12184.1670.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12184.1670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12184contigH-elongata_contig12184:7358..8543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929717.3611662-CDS-H-elongata_contig12184:7357..74801622929717.3611662-CDS-H-elongata_contig12184:7357..7480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12184 7358..7480 -
1691679130.541262-CDS-H-elongata_contig12184:7357..74801691679130.541262-CDS-H-elongata_contig12184:7357..7480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12184 7358..7480 -
1622929717.3922648-CDS-H-elongata_contig12184:8450..85431622929717.3922648-CDS-H-elongata_contig12184:8450..8543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12184 8451..8543 -
1691679130.5513217-CDS-H-elongata_contig12184:8450..85431691679130.5513217-CDS-H-elongata_contig12184:8450..8543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12184 8451..8543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12184.1670.1prot_H-elongata_contig12184.1670.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12184 7358..8543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12184.1670.1

>prot_H-elongata_contig12184.1670.1 ID=prot_H-elongata_contig12184.1670.1|Name=mRNA_H-elongata_contig12184.1670.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
NDSPFLQRKSLRLARGGGASSRRTSENCSDEIRSFTVDHALTPCARGARA
STPAQIGRNRPRFRELPWLVTP
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mRNA from alignment at H-elongata_contig12184:7358..8543-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12184.1670.1 ID=mRNA_H-elongata_contig12184.1670.1|Name=mRNA_H-elongata_contig12184.1670.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1186bp|location=Sequence derived from alignment at H-elongata_contig12184:7358..8543- (Himanthalia elongata Himel1 dioecious)
AACGATTCGCCATTTTTGCAGCGGAAGTCATTGCGACTGGCTCGCGGAGG
TGGCGCGTCGTCTCGCCGAACATCGGAGAACTGCAGCGACGAGGTGATCT
AGTTGTTTGTCGGATTGAAAAATAATGCCGCCGCAGATGTTTACAGTAGT
AGTAGTGGCATCGCGGTTAATTATAACCAAGAATGACGCCGACAGAGGGT
ATCTGCTGAGAGGACAGAATATTTTGAAAAGCAGGTTCAATACTGTACGA
GAAAATAGGCTCAACTACTTTTTGTCTAAAACATCATTTTCCGTAAGATA
CCGTAGTATAAATAAGCTTTGCCTTCAGCTATGCGTTTTTACGCTTGTTC
TATGACGCTAAAACTACTGTAGAGCTTACCGCAGCTCGCTTGCACCCAAA
CAAGACGAAGGAAAGTGCTTTCGAGGCCCTTTTTCGAGATACGCCTGAAC
AATCTATTTCGTGCTTTTCTTCAGCCCTTAGGGTGGGTCTTATCGGAATA
CAAAAGTTAAAATTTCCACCCGATTTAAATTAAAATCGGGCTCTGATTGG
TNNNNNNNNNNTAACGCGAAGCCTTCGTCCAATCAAAGCCCGATTTAAAT
ATAAATTGGCTGGAATTTAAACTTTTGCAACCCCGTTAATACCCGCCCTT
ATGGAATACGTAAGAAAACCATCTTAAAATAATTACAACGTACCGTAATA
GACATGCGTTGTAGAAACCAATGAAGAGTCCAAGATGAAAATTTCATGTG
AGGGAAAGTGTTGTTTTGGGATTGAGCCCGCTGTAAATATACAACCTGCT
TTCTCAGAAGACCGTGTTTGAGGCTTCGAGGGTAACAAAGCTAGACCACG
AGGTCATGGCCAAAATAACCCCAAACCGCGTGGTTCATCGCGTTTTTTTG
ATAATAGTCCTACGTTGTATGTTCGAGCGACGCTCAGTTGGCGCGAGCCC
TTCTCATGCGCACTCTCTTTCCCTCACCCCCCTCACCGAAATTCCGTTGC
TGCCAGTCGGTCAATAAGACAGGAGGAAGAGGTGGCGGTGCTGGTTGTGA
TACGCGTCCAGAGATACGATCGTTTACAGTCGATCACGCCTTGACACCAT
GTGCGAGGGGGGCGAGAGCAAGCACTCCGGCGCAGATCGGCCGGAACCGA
CCGCGGTTTCGAGAACTGCCGTGGCTGGTTACTCCT
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Coding sequence (CDS) from alignment at H-elongata_contig12184:7358..8543-

>mRNA_H-elongata_contig12184.1670.1 ID=mRNA_H-elongata_contig12184.1670.1|Name=mRNA_H-elongata_contig12184.1670.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig12184:7358..8543- (Himanthalia elongata Himel1 dioecious)
AACGATTCGCCATTTTTGCAGCGGAAGTCATTGCGACTGGCTCGCGGAGG
TGGCGCGTCGTCTCGCCGAACATCGGAGAACTGCAGCGACGAGAACGATT
CGCCATTTTTGCAGCGGAAGTCATTGCGACTGGCTCGCGGAGGTGGCGCG
TCGTCTCGCCGAACATCGGAGAACTGCAGCGACGAGATACGATCGTTTAC
AGTCGATCACGCCTTGACACCATGTGCGAGGGGGGCGAGAGCAAGCACTC
CGGCGCAGATCGGCCGGAACCGACCGCGGTTTCGAGAACTGCCGTGGCTG
GTTACTCCTATACGATCGTTTACAGTCGATCACGCCTTGACACCATGTGC
GAGGGGGGCGAGAGCAAGCACTCCGGCGCAGATCGGCCGGAACCGACCGC
GGTTTCGAGAACTGCCGTGGCTGGTTACTCCT
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