mRNA_H-elongata_contig92450.16700.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig92450.16700.1
Unique NamemRNA_H-elongata_contig92450.16700.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92450.16700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig92450contigH-elongata_contig92450:1143..2165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size811
Cds size795
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig92450.16700.1prot_H-elongata_contig92450.16700.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig92450 1143..2151 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931322.499669-CDS-H-elongata_contig92450:1142..14151622931322.499669-CDS-H-elongata_contig92450:1142..1415Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92450 1143..1415 -
1691679789.4672756-CDS-H-elongata_contig92450:1142..14151691679789.4672756-CDS-H-elongata_contig92450:1142..1415Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92450 1143..1415 -
1622931322.519204-CDS-H-elongata_contig92450:1629..21511622931322.519204-CDS-H-elongata_contig92450:1629..2151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92450 1630..2151 -
1691679789.4840457-CDS-H-elongata_contig92450:1629..21511691679789.4840457-CDS-H-elongata_contig92450:1629..2151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig92450 1630..2151 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931322.534739-UTR-H-elongata_contig92450:2151..21651622931322.534739-UTR-H-elongata_contig92450:2151..2165Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig92450 2152..2165 -
1691679789.4956234-UTR-H-elongata_contig92450:2151..21651691679789.4956234-UTR-H-elongata_contig92450:2151..2165Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig92450 2152..2165 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig92450.16700.1

>prot_H-elongata_contig92450.16700.1 ID=prot_H-elongata_contig92450.16700.1|Name=mRNA_H-elongata_contig92450.16700.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp
MTAAGAPPDGADRQLSAKAKPFVPATTAFTASAGASTTSSAKAASVMGSS
ASASLKAASSTRTPTPTPSVVKKEPSVVKKEPSVIKKEPSVVKKEPSVPI
SVPAKRSREVSTPSSLTSINRPLKTTRTTKTTKGEVGEKGKEKEKGEIVT
QQPKDSDSASGGNGNGNGRAVTKQEKSVVRGQAAAAQSVTTPSAAVSSDA
SASSSTNPNPKAGSVKPTEHKSSASTTSVPSGGGNSRAALQQEAQQLQPQ
GRGLSGAGGSLRSRV
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mRNA from alignment at H-elongata_contig92450:1143..2165-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig92450.16700.1 ID=mRNA_H-elongata_contig92450.16700.1|Name=mRNA_H-elongata_contig92450.16700.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1023bp|location=Sequence derived from alignment at H-elongata_contig92450:1143..2165- (Himanthalia elongata Himel1 dioecious)
GAAGCCATAGGACTATGACTGCAGCGGGTGCACCTCCCGATGGAGCCGAT
AGACAGCTATCAGCAAAGGCCAAGCCGTTTGTACCGGCCACCACCGCGTT
CACCGCAAGCGCTGGTGCCAGCACCACATCCTCCGCCAAAGCAGCTTCTG
TCATGGGGTCGTCAGCGTCAGCGTCGTTGAAGGCGGCCTCATCCACTCGA
ACTCCCACTCCCACTCCGTCGGTCGTAAAGAAAGAGCCGTCGGTCGTAAA
GAAAGAGCCGTCGGTCATAAAGAAAGAGCCGTCGGTCGTAAAAAAAGAGC
CGTCGGTCCCTATCTCTGTTCCTGCTAAGAGATCGAGGGAGGTATCTACG
CCGTCATCTTTAACTAGTATCAATAGGCCTCTGAAGACTACCAGGACTAC
TAAGACTACTAAGGGGGAGGTCGGGGAAAAGGGGAAGGAGAAGGAGAAGG
GGGAGATCGTCACTCAACAGCCAAAAGATAGCGATAGCGCTAGTGGTGGT
AACGGCAACGGCAATGGCAGAGCGGTAACCAAGCAGGTGAGGGTTAGGGT
TAGGGTCATGAGTTATGGTTTTTATTGATATTCGCGATAAAGGACGAGAC
AGGACTGAAGTTTGATGGAAGGCGTTTACTGAAGTGTGATGGATGTGTGT
GATGGGGCGTGAGAGTACTGTGGTTCGATGTGCTTTTTTGCCCACCACGA
ACCCCCTCACCGTATCCCATCCTACCGTATCATACCGTATTATACCGCAG
GAGAAGTCAGTCGTCAGGGGCCAGGCGGCTGCTGCCCAGAGCGTCACGAC
TCCTTCTGCTGCTGTTTCTTCTGATGCTTCGGCTTCCTCCAGCACCAACC
CTAACCCTAAGGCAGGGTCAGTCAAACCGACTGAACATAAATCTAGCGCC
TCGACCACGTCGGTACCCTCAGGAGGAGGGAACTCGAGGGCCGCGCTGCA
GCAAGAGGCGCAGCAGCTACAGCCTCAGGGTCGTGGTCTTAGTGGGGCGG
GAGGGTCGTTACGTTCTAGAGTA
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Coding sequence (CDS) from alignment at H-elongata_contig92450:1143..2165-

>mRNA_H-elongata_contig92450.16700.1 ID=mRNA_H-elongata_contig92450.16700.1|Name=mRNA_H-elongata_contig92450.16700.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig92450:1143..2165- (Himanthalia elongata Himel1 dioecious)
ATGACTGCAGCGGGTGCACCTCCCGATGGAGCCGATAGACAGCTATCAGC
AAAGGCCAAGCCGTTTGTACCGGCCACCACCGCGTTCACCGCAAGCGCTG
GTGCCAGCACCACATCCTCCGCCAAAGCAGCTTCTGTCATGGGGTCGTCA
GCGTCAGCGTCGTTGAAGGCGGCCTCATCCACTCGAACTCCCACTCCCAC
TCCGTCGGTCGTAAAGAAAGAGCCGTCGGTCGTAAAGAAAGAGCCGTCGG
TCATAAAGAAAGAGCCGTCGGTCGTAAAAAAAGAGCCGTCGGTCCCTATC
TCTGTTCCTGCTAAGAGATCGAGGGAGGTATCTACGCCGTCATCTTTAAC
TAGTATCAATAGGCCTCTGAAGACTACCAGGACTACTAAGACTACTAAGG
GGGAGGTCGGGGAAAAGGGGAAGGAGAAGGAGAAGGGGGAGATCGTCACT
CAACAGCCAAAAGATAGCGATAGCGCTAGTGGTGGTAACGGCAACGGCAA
TGGCAGAGCGGTAACCAAGCAGATGACTGCAGCGGGTGCACCTCCCGATG
GAGCCGATAGACAGCTATCAGCAAAGGCCAAGCCGTTTGTACCGGCCACC
ACCGCGTTCACCGCAAGCGCTGGTGCCAGCACCACATCCTCCGCCAAAGC
AGCTTCTGTCATGGGGTCGTCAGCGTCAGCGTCGTTGAAGGCGGCCTCAT
CCACTCGAACTCCCACTCCCACTCCGTCGGTCGTAAAGAAAGAGCCGTCG
GTCGTAAAGAAAGAGCCGTCGGTCATAAAGAAAGAGCCGTCGGTCGTAAA
AAAAGAGCCGTCGGTCCCTATCTCTGTTCCTGCTAAGAGATCGAGGGAGG
TATCTACGCCGTCATCTTTAACTAGTATCAATAGGCCTCTGAAGACTACC
AGGACTACTAAGACTACTAAGGGGGAGGTCGGGGAAAAGGGGAAGGAGAA
GGAGAAGGGGGAGATCGTCACTCAACAGCCAAAAGATAGCGATAGCGCTA
GTGGTGGTAACGGCAACGGCAATGGCAGAGCGGTAACCAAGCAGGAGAAG
TCAGTCGTCAGGGGCCAGGCGGCTGCTGCCCAGAGCGTCACGACTCCTTC
TGCTGCTGTTTCTTCTGATGCTTCGGCTTCCTCCAGCACCAACCCTAACC
CTAAGGCAGGGTCAGTCAAACCGACTGAACATAAATCTAGCGCCTCGACC
ACGTCGGTACCCTCAGGAGGAGGGAACTCGAGGGCCGCGCTGCAGCAAGA
GGCGCAGCAGCTACAGCCTCAGGGTCGTGGTCTTAGTGGGGCGGGAGGGT
CGTTACGTTCTAGAGTAGAGAAGTCAGTCGTCAGGGGCCAGGCGGCTGCT
GCCCAGAGCGTCACGACTCCTTCTGCTGCTGTTTCTTCTGATGCTTCGGC
TTCCTCCAGCACCAACCCTAACCCTAAGGCAGGGTCAGTCAAACCGACTG
AACATAAATCTAGCGCCTCGACCACGTCGGTACCCTCAGGAGGAGGGAAC
TCGAGGGCCGCGCTGCAGCAAGAGGCGCAGCAGCTACAGCCTCAGGGTCG
TGGTCTTAGTGGGGCGGGAGGGTCGTTACGTTCTAGAGTA
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