prot_H-elongata_contig9244.16698.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig9244.16698.1
Unique Nameprot_H-elongata_contig9244.16698.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length760
Homology
BLAST of mRNA_H-elongata_contig9244.16698.1 vs. uniprot
Match: A0A6H5JE04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE04_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 2.840e-56
Identity = 274/796 (34.42%), Postives = 343/796 (43.09%), Query Frame = 0
Query:   16 TRVVISNLKRDVDEEALAALCRQLGRVTNFRLS--PGHSPDSPITAIVEYATPEEARDVVDHVDGRLILGQPVTANVTASGQARAPYSSGMEGRNVDHPQGKDGGPSTY----------------------------------GRYPRPQLNEPPRQFQTPPFAGARPWEQDQRAAERVQPSPQPT---GFSEDFPHSQQQPPWTRHLRREKVAGSD---APRFLDDGHHNPRASDNPRTPSQQWQIQSEVSREAD-SLQWERDGRRGSYPTQRASHGEHP--EFHSHS---SSSWPAGTDARPPVYVANGAVSSQRPLLPPGRVPGGGDSRGPPGIA--PHDLRGGN----------GYVDGDAEGVSVGKRRKRSPQNDG-RGTPGPGHSASTWREGPRNQAPPQESAEGEPAPIRDPDFDREVMRQAALLVAERELRVRENARKQ-----TNTEPVRRDDPELQGREHMVVASNASMGNRGSRSL-EDSDRRKRAGPGSRERTQRDSRDRDARSVRNAGKGFDNQAASAVGGRDWREDKRSHRDDSP--HKAVHGRIDEREDKVRVDAGANERRGPPDRKYSIDNGGSNMNKHRDDEKWSHKDR-RDEHRVKRDSRSRTSNSSRDPDRGTS---RADKTWERGNKPTHMKVEGHARRPDDRDAPREAALGPSLNKNWE-QSSADSGWYVHVGGISFSTTFTALAKRFAAFGDVNGFKVIFNNVTCRAADADVVVGGVGGHDQQPKKDPTKAAVVTASTGFAFISFDDKEGMERAVECMNNQVLDGHVLKVGVG 737
            TRV+I NLKRDVD+EAL AL  QLG VTNFRL   PG  P SP T +VEYA+ E+A  VV HV G+LILG+PVTA V A G    P            PQG  G PST                                   GRYP P +   P   +   +                    Q T   G S +    QQ   W       + +G++   APR+  +G        +     + WQ Q     EAD S  WER  R      QRA   + P   FH  +   +S W    D++  V   N A               GG  RGP G A  P     G+          GY D D   V  G  R+  P N    G P  G +A+ W +  +   PP  S +GE       DF++EV++ AALLVAERE+  RE ARKQ     +  +P     P  +G      A +      GSRS+ E++D RK+  P SR    +D  D D R                       + K++ RD S   H +V  R DER+ K R      E +G P        G     K  D  + SHKD+ R                  DPD   S   +   +W+R         +G    P                  WE Q  A  G+YVHVGG+SFSTTFT LAKRFAAFGDVNGFKVIFN V+C A +     G         K++ TKAAVVTAS+GFAFISFD + GME+AVECM+ Q LDG++LKV  G
Sbjct:   25 TRVIIGNLKRDVDKEALKALLCQLGHVTNFRLQQPPGIDPASPATGVVEYASAEDASRVVAHVHGKLILGRPVTAWVAAPGSTAPPL-----------PQG--GPPSTSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNGGRYP-PAVGHNPNSHEDARWERPXXXXXXXXXXXXXXXXXQDTYGDGLSHNQRQQQQHQSWHSGRPMPQQSGANVPIAPRYGGEG-------GSAHYAERHWQDQRHGHSEADESAAWERPDRNQFPAAQRAPMRQQPPPSFHRPTGPQTSEWYDDADSQ--VAHGNSAYDD------------GGQRRGPRGRAMMPRRASAGSVGVPPRSSDDGYGDDD---VPAGAMRRLPPPNSAPHGVPLSGRAAA-WTDDAQYTMPPPISIKGE-------DFEKEVVKAAALLVAEREM-AREEARKQGKQNWSGADPT----PGYEGPRKSKKARS------GSRSMGEETDERKKREPSSR----KDENDGDHRP----------------------KSKKTRRDSSGDRHGSVGKRADERKGKART---REESKGGPQ-------GDDRDRKREDSSRTSHKDKHRXXXXXXXXXXXXXXXXXNDPDSSKSSPKQGSSSWDR---------KGFNSSP------------------WENQHQATGGFYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCSAEETSKRKGS--------KEEVTKAAVVTASSGFAFISFDKERGMEKAVECMDGQKLDGNILKVTRG 692          
BLAST of mRNA_H-elongata_contig9244.16698.1 vs. uniprot
Match: D8LJZ2_ECTSI (Polyphosphate kinase 2 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ2_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 6.440e-32
Identity = 155/434 (35.71%), Postives = 201/434 (46.31%), Query Frame = 0
Query:  313 NGYVDGDAEGVSVGKRRKRSPQNDGRGTPGPGHSASTWREGPRNQAPPQESAEGEPAPIRDPDFDREVMRQAALLVAERELRVRENARKQTNTEPVRRDDPELQGREHMVVASNASMGNRGSRSLEDSDRRKRAGPGSRERTQRDSRDRDARSVRNAGKGFDNQAASAVGGRDWREDKRSHRDDSP--HKAVHGRIDEREDKVRVDAGANERRGPPDRKYSIDNGGSNMNKHRDDEKWSHKDRRDEHRVKRDSRSRTSNSSRDPDRGTSRA-----DKTWERGNKPTHMKVEGHARRPDDRDAPREAALGPSLNKN-WE-QSSADSGWYVHVGGISFSTTFTALAKRFAAFGDVNGFKVIFNNVTCRAADADVVVGGVGGHDQQPKKDPTKAAVVTASTGFAFISFDDKEGMERAVECMNNQVLDGHVLKVGVG 737
            +GY D D    ++  RR   P +   G P PG +A+ W +      PP  S +GE       DF++EV++ AALLVAERE+  RE ARKQ   +     DP   G E    +  A  G R     E++D RK+  P SR    +D  D D R                         K++ RD S   H +V  R DER+ K R      E +G P         G + ++ R+                           RD D  +S++       TW+R                               N + WE Q  A  G+YVHVGG+SFSTTFT LAKRFAAFGDVNGFKVIFN V+C A +     G         K++ TKAAVVTAS+GFAFISFD++ GME+AVECM+ Q LDG++LKV  G
Sbjct:   20 DGYGDDDVPSGAM--RRPPXPNSASHGVPLPGRAAA-WTDDAEYTMPPPISIKGE-------DFEKEVVKAAALLVAEREM-AREEARKQ-GKQDWSGVDP-TPGHEGPRKSKKARSGGRSMG--EETDERKKREPSSR----KDENDGDHRP----------------------RSKKTRRDSSGDRHGSVGKRADERKGKTRT---REESKGGPQ--------GDDRDRKREXXXXXXXXXXXXXXXXXXXXXXXXXXXRDNDLDSSKSLPKQGSSTWDR----------------------------KDFNSSPWENQHQATGGFYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCSAEETSKRKGS--------KEEVTKAAVVTASSGFAFISFDNERGMEKAVECMDGQKLDGNILKVTRG 365          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9244.16698.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JE04_9PHAE2.840e-5634.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJZ2_ECTSI6.440e-3235.71Polyphosphate kinase 2 family protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 632..735
e-value: 6.7E-11
score: 52.2
coord: 17..89
e-value: 1.3E-7
score: 41.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 700..733
e-value: 3.9E-7
score: 29.8
coord: 18..86
e-value: 1.5E-9
score: 37.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 631..739
score: 11.963
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 16..93
score: 11.042
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 6..120
e-value: 8.4E-12
score: 47.4
NoneNo IPR availablePANTHERPTHR15481RIBONUCLEIC ACID BINDING PROTEIN S1coord: 492..734
coord: 15..227
NoneNo IPR availablePANTHERPTHR15481:SF0RNA-BINDING PROTEIN WITH SERINE-RICH DOMAIN 1coord: 492..734
NoneNo IPR availablePANTHERPTHR15481:SF0RNA-BINDING PROTEIN WITH SERINE-RICH DOMAIN 1coord: 15..227
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 13..118
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 575..736

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9244contigH-elongata_contig9244:7..4101 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9244.16698.1mRNA_H-elongata_contig9244.16698.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig9244 2..4196 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig9244.16698.1 ID=prot_H-elongata_contig9244.16698.1|Name=mRNA_H-elongata_contig9244.16698.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=760bp
MTQRGDKPMIGDAPQTRVVISNLKRDVDEEALAALCRQLGRVTNFRLSPG
HSPDSPITAIVEYATPEEARDVVDHVDGRLILGQPVTANVTASGQARAPY
SSGMEGRNVDHPQGKDGGPSTYGRYPRPQLNEPPRQFQTPPFAGARPWEQ
DQRAAERVQPSPQPTGFSEDFPHSQQQPPWTRHLRREKVAGSDAPRFLDD
GHHNPRASDNPRTPSQQWQIQSEVSREADSLQWERDGRRGSYPTQRASHG
EHPEFHSHSSSSWPAGTDARPPVYVANGAVSSQRPLLPPGRVPGGGDSRG
PPGIAPHDLRGGNGYVDGDAEGVSVGKRRKRSPQNDGRGTPGPGHSASTW
REGPRNQAPPQESAEGEPAPIRDPDFDREVMRQAALLVAERELRVRENAR
KQTNTEPVRRDDPELQGREHMVVASNASMGNRGSRSLEDSDRRKRAGPGS
RERTQRDSRDRDARSVRNAGKGFDNQAASAVGGRDWREDKRSHRDDSPHK
AVHGRIDEREDKVRVDAGANERRGPPDRKYSIDNGGSNMNKHRDDEKWSH
KDRRDEHRVKRDSRSRTSNSSRDPDRGTSRADKTWERGNKPTHMKVEGHA
RRPDDRDAPREAALGPSLNKNWEQSSADSGWYVHVGGISFSTTFTALAKR
FAAFGDVNGFKVIFNNVTCRAADADVVVGGVGGHDQQPKKDPTKAAVVTA
STGFAFISFDDKEGMERAVECMNNQVLDGHVLKVGVGRLNVVRLLLLFTY
AMSSTVFSK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf