mRNA_H-elongata_contig924.16694.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig924.16694.1
Unique NamemRNA_H-elongata_contig924.16694.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig924.16694.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 3.020e-41
Identity = 72/122 (59.02%), Postives = 88/122 (72.13%), Query Frame = 1
Query:    1 MCCWTKNDNDGMEDNTDVCRYT--ASSHVTHDYPGDSEGEVHCHGFGWPEESNYYTYIEPLYHYVRNFEHKDYQGYYGSVLDAPECGCIEDMPVVSRSDCTTYS-----KGGLTACTNNDLR 345
            MCCWT+ND +GM DNTDVCR     S   T ++PGDSEGEVHCHGF WPE++    YI  L  +V+NF+H+D +GYYG++  AP CGCIE+MPVVS +DCTTY      +G  TACT NDLR
Sbjct:  328 MCCWTENDGEGMADNTDVCRVVDYPSMGETLEFPGDSEGEVHCHGFVWPEDATD-KYIHLLSQFVQNFDHRDRRGYYGNIEGAPMCGCIEEMPVVSEADCTTYDTDPEREGKFTACTKNDLR 448          
BLAST of mRNA_H-elongata_contig924.16694.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 1.520e-39
Identity = 70/123 (56.91%), Postives = 88/123 (71.54%), Query Frame = 1
Query:    1 MCCWTKNDNDGMEDNTDVCR---YTASSHVTHDYPGDSEGEVHCHGFGWPEESNYYTYIEPLYHYVRNFEHKDYQGYYGSVLDAPECGCIEDMPVVSRSDCTTYS-----KGGLTACTNNDLR 345
            MCCWT+ND  GM DNTDVCR   Y +    T +YPG+SEGEVHCHGF WPE++    YI  L  +V++F+H+D +GY+G++  AP CGCIE+MP VS +DCTTY      +G  TACTNNDLR
Sbjct:  342 MCCWTENDGQGMADNTDVCRVIDYPSMGETT-EYPGESEGEVHCHGFVWPEDATD-KYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLR 462          
BLAST of mRNA_H-elongata_contig924.16694.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 8.900e-38
Identity = 69/123 (56.10%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    1 MCCWTKNDNDGMEDNTDVCR---YTASSHVTHDYPGDSEGEVHCHGFGWPEESNYYTYIEPLYHYVRNFEHKDYQGYYGSVLDAPECGCIEDMPVVSRSDCTTYS-----KGGLTACTNNDLR 345
            MCCWT+ND  GM DNTDVCR   Y +    T +YPG+SEGEVHCHGF WPE++    YI  L  +V++F+H+D +GY+G++  AP CGCIE+MP VS +DCTTY      +G  TACT NDLR
Sbjct:  299 MCCWTENDGQGMADNTDVCRVIDYPSMGETT-EYPGESEGEVHCHGFVWPEDATD-KYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTKNDLR 419          
BLAST of mRNA_H-elongata_contig924.16694.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 5.300e-33
Identity = 64/122 (52.46%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    1 MCCWTKNDNDGMEDNTDVCRYT--ASSHVTHDYPGDSEGEVHCHGFGWPEESNYYTYIEPLYHYVRNFEHKDYQGYYGSVLDAPECGCIEDMPVVSRSDCTTYS-----KGGLTACTNNDLR 345
            MCCWT+ND  G+ DNTDVCR     S+  T +YPGDSEG+VHCHG  WPE++    YI  L  YV+ F+H   +GYYG++  AP CGC EDMP VS++DCT YS     +  +  C  NDLR
Sbjct:  276 MCCWTENDAKGVLDNTDVCRIHDYPSAGETLEYPGDSEGDVHCHGIVWPEDATD-KYIHLLAQYVQTFDHIGNKGYYGNIEGAPMCGCAEDMPEVSKADCTNYSPTEEDEDRIRGCDPNDLR 396          
BLAST of mRNA_H-elongata_contig924.16694.1 vs. uniprot
Match: D7G8D2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.570e-26
Identity = 55/120 (45.83%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    1 MCCWTKNDNDGMEDNTDVCRYTASSHVTHDYPGDSEGEVHCHGFGWPEESNYYTYIEPLYHYVRNFEHKDYQGYYGSVLDAPECGCIEDMPVVSRSDCTTYSKGGLT-----ACTNNDLR 345
            MCCW   +   ++DNTDVC Y        ++PGDSEG VHCHGF WPE ++   +I+ L   V    H D + Y G++  AP C C+E+MP VSR+DCT Y K  L      AC+ NDLR
Sbjct:   65 MCCWDGRNGLAVKDNTDVCSYRGE-----EFPGDSEGPVHCHGFVWPENASD-DFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLR 178          
BLAST of mRNA_H-elongata_contig924.16694.1 vs. uniprot
Match: D7G8C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C5_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 6.580e-26
Identity = 55/120 (45.83%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    1 MCCWTKNDNDGMEDNTDVCRYTASSHVTHDYPGDSEGEVHCHGFGWPEESNYYTYIEPLYHYVRNFEHKDYQGYYGSVLDAPECGCIEDMPVVSRSDCTTYSKGGLT-----ACTNNDLR 345
            MCCW   +   ++DNTDVC Y        ++PGDSEG VHCHGF WPE ++   +I+ L   V    H D + Y G++  AP C C+E+MP VSR+DCT Y K  L      AC+ NDLR
Sbjct:  129 MCCWDGRNGLAVKDNTDVCSYRGE-----EFPGDSEGPVHCHGFVWPENASD-DFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLR 242          
BLAST of mRNA_H-elongata_contig924.16694.1 vs. uniprot
Match: A0A6H5L319_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L319_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.100e-25
Identity = 58/122 (47.54%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    1 MCCWTKNDN-DGMEDNTDVCRYT--ASSHVTHDYPGDSEGEVHCHGFGWPEESNYYTYIEPLYHYVRNFEHKDYQGYY-----GSVLDAPECGCIEDMPVVSRSDCTTYSKGGLTACTNNDL 342
            MCCWT ND  DGM  N+DVCR         + + P +SEG V CHGF W E ++  T+I PLYHYV+N    +  G+Y      SV   PECGCIE++P VS S+C+ YS  G+  C NN L
Sbjct:   52 MCCWTGNDGADGMTANSDVCRVLDYPEEGDSFEMPRESEGFVCCHGFAWAEGADVDTHILPLYHYVKNVGRTEEAGFYEMKLPDSVEGTPECGCIEEIPSVSCSECSRYSWEGIAGCGNNGL 173          
BLAST of mRNA_H-elongata_contig924.16694.1 vs. uniprot
Match: D8LHS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS4_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 4.950e-23
Identity = 54/123 (43.90%), Postives = 70/123 (56.91%), Query Frame = 1
Query:    1 MCCWTKN-DNDGMEDNTDVCRYTASSHVTHDYPGDSEGEVHCHGFGWPEESN--YYTYIEPLYHYVRNFEHKDYQGYYGSVLDAPECGCIEDMPVVSRSDCTTYSKGGLT-----ACTNNDLR 345
            MCCW+     + + DNTDV RY ++     ++PG+SEG+VHCHG  WPE S+  Y  Y+     Y  + E K   GY+G +  AP C C+E MP VSRSDC+ Y    L      AC  NDLR
Sbjct:    1 MCCWSSRVGEEPVSDNTDVYRYGST-----EFPGESEGDVHCHGLVWPEGSSDEYIIYLALDVAYNHHVEEK---GYFGHIPGAPVCDCLERMPEVSRSDCSQYRPAHLKGSDFMACPKNDLR 115          
BLAST of mRNA_H-elongata_contig924.16694.1 vs. uniprot
Match: A0A7S1CX31_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CX31_CYCTE)

HSP 1 Score: 80.5 bits (197), Expect = 8.210e-16
Identity = 60/171 (35.09%), Postives = 74/171 (43.27%), Query Frame = 1
Query:    1 MCCWTK----NDNDGM--------------EDNTDVC-----RYTASSHVTHD---YPGDSEGEVHCHGFGWPEESNY----YTYIEPLYHYVRNFEHKDYQGYYGSVLDAPECGCIEDMPVVSRSDCT----------------------TYSKGGLTAC-----TNNDL 342
            MCCWT+    ND++G                DNTDVC     R   S+ V      Y  D EG+ HCHGF W    N+    Y  +  LY  V  ++H   +GY  +V  AP C C+E MPVV+RSDCT                      TYS+    AC     TNNDL
Sbjct:   72 MCCWTQDRQANDDNGNCAEPYDENCVDADPADNTDVCYVDMERSPESNRVQQGLAVYENDDEGDAHCHGFAWDTNPNHESAQYKGVNLLY--VSMYDHLSERGYVRNVPGAPMCACVEQMPVVTRSDCTEIEFIKSWTGYTLSGDKLSMYITYSEVDFNACQGADNTNNDL 240          
BLAST of mRNA_H-elongata_contig924.16694.1 vs. uniprot
Match: A0A7S1YUI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YUI1_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.250e-15
Identity = 50/132 (37.88%), Postives = 68/132 (51.52%), Query Frame = 1
Query:    1 MCCWTK----NDNDGM--------------EDNTDVC-----RYTASSHVTHD----YPGDSEGEVHCHGFGWPEES--NYYTYIEPLYHYVRNFEHKDYQGYYGSVLDAPECGCIEDMPVVSRSDCTTYSK 309
            MCCW+     NDN+G                DNTD+C     R T+SS    D    + G+ EG +HCHGF W ++S  +   Y      YV  ++H   +GY  +V  AP CGC+E MP+VSRSDCT  ++
Sbjct:    8 MCCWSADRQANDNNGNCATPYDTNCKDSDPGDNTDLCAVDMARTTSSSSHVDDGFALFEGNGEGPIHCHGFAWGQDSFEDAARYKGNNLFYVSMYDHMHQRGYVRNVPGAPMCGCLEKMPIVSRSDCTEIAE 139          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig924.16694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT55_ECTSI3.020e-4159.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2N0_ECTSI1.520e-3956.91Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D7G2N2_ECTSI8.900e-3856.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FT54_ECTSI5.300e-3352.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G8D2_ECTSI1.570e-2645.83Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G8C5_ECTSI6.580e-2645.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L319_9PHAE1.100e-2547.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHS4_ECTSI4.950e-2343.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1CX31_CYCTE8.210e-1635.09Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S1YUI1_9STRA1.250e-1537.88Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig924contigH-elongata_contig924:15690..16532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.4
Seed ortholog evalue1e-33
Seed eggNOG ortholog2880.D7FT55
EggNOG OGs2E0FN@1,2S7W7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size345
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931321.9423811-CDS-H-elongata_contig924:15689..158041622931321.9423811-CDS-H-elongata_contig924:15689..15804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig924 15690..15804 -
1691679789.1957896-CDS-H-elongata_contig924:15689..158041691679789.1957896-CDS-H-elongata_contig924:15689..15804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig924 15690..15804 -
1622931321.966502-CDS-H-elongata_contig924:16302..165321622931321.966502-CDS-H-elongata_contig924:16302..16532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig924 16303..16532 -
1691679789.2079945-CDS-H-elongata_contig924:16302..165321691679789.2079945-CDS-H-elongata_contig924:16302..16532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig924 16303..16532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig924.16694.1prot_H-elongata_contig924.16694.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig924 15690..16532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig924.16694.1

>prot_H-elongata_contig924.16694.1 ID=prot_H-elongata_contig924.16694.1|Name=mRNA_H-elongata_contig924.16694.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MCCWTKNDNDGMEDNTDVCRYTASSHVTHDYPGDSEGEVHCHGFGWPEES
NYYTYIEPLYHYVRNFEHKDYQGYYGSVLDAPECGCIEDMPVVSRSDCTT
YSKGGLTACTNNDLR
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mRNA from alignment at H-elongata_contig924:15690..16532-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig924.16694.1 ID=mRNA_H-elongata_contig924.16694.1|Name=mRNA_H-elongata_contig924.16694.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=843bp|location=Sequence derived from alignment at H-elongata_contig924:15690..16532- (Himanthalia elongata Himel1 dioecious)
ATGTGCTGCTGGACGAAAAATGACAACGACGGCATGGAGGACAACACGGA TGTGTGCCGCTACACCGCTTCCTCTCATGTGACACACGACTACCCTGGAG ACAGCGAGGGCGAGGTGCACTGCCACGGATTCGGCTGGCCAGAAGAATCA AACTACTACACATACATAGAGCCGCTGTATCACTACGTGCGAAACTTCGA GCACAAGGACTACCAGGGCTACTACGGATCGTGAGTCCTGGTAAAAAGAT CCCGCGTCTCCCGTATATTAGAACGCTCGATCGCAACGACGACCACTTGT GTGCATTCCGACCCACTTCACATTTAACGGCTATATTGATATCTTCCACC AGGAAGTGCAACTGATAGGTTAATACCCTCTTTAATAATGACTTATTGTG AATATTTTGTTCTCCCGACTCCTCTATAAAACGGAAGAAAGCTCCCACGC CGCAAAACAAGATGGTACCGCGAATACATTTAGGTCCCTAGAGGAGATGT ATTTCTTCGCTTTTCCGTATGGTTGAGTAAAACATGTGCAGTATGATTAA TAATCCTGCGCCATGGTACATTCATCAAATATCATACGTATGTGTTCTGC GTCGCTTTCTCCAAGAGGTCAACATATGGCAATACTTGTCGACATTCTCC AACGTGGAATATTAAGCGCTGTAGAATAAATCGTCATTGCCCACCTCTAC CCTCGTACTCGTCCATATATTGTCGCAGAGTGCTGGATGCGCCCGAGTGT GGGTGTATTGAAGATATGCCGGTCGTGAGCCGCTCGGATTGCACGACCTA CAGCAAGGGCGGGCTTACGGCTTGCACCAACAACGACCTTCGA
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Coding sequence (CDS) from alignment at H-elongata_contig924:15690..16532-

>mRNA_H-elongata_contig924.16694.1 ID=mRNA_H-elongata_contig924.16694.1|Name=mRNA_H-elongata_contig924.16694.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig924:15690..16532- (Himanthalia elongata Himel1 dioecious)
ATGTGCTGCTGGACGAAAAATGACAACGACGGCATGGAGGACAACACGGA
TGTGTGCCGCTACACCGCTTCCTCTCATGTGACACACGACTACCCTGGAG
ACAGCGAGGGCGAGGTGCACTGCCACGGATTCGGCTGGCCAGAAGAATCA
AACTACTACACATACATAGAGCCGCTGTATCACTACGTGCGAAACTTCGA
GCACAAGGACTACCAGGGCTACTACGGATCATGTGCTGCTGGACGAAAAA
TGACAACGACGGCATGGAGGACAACACGGATGTGTGCCGCTACACCGCTT
CCTCTCATGTGACACACGACTACCCTGGAGACAGCGAGGGCGAGGTGCAC
TGCCACGGATTCGGCTGGCCAGAAGAATCAAACTACTACACATACATAGA
GCCGCTGTATCACTACGTGCGAAACTTCGAGCACAAGGACTACCAGGGCT
ACTACGGATCAGTGCTGGATGCGCCCGAGTGTGGGTGTATTGAAGATATG
CCGGTCGTGAGCCGCTCGGATTGCACGACCTACAGCAAGGGCGGGCTTAC
GGCTTGCACCAACAACGACCTTCGAAGTGCTGGATGCGCCCGAGTGTGGG
TGTATTGAAGATATGCCGGTCGTGAGCCGCTCGGATTGCACGACCTACAG
CAAGGGCGGGCTTACGGCTTGCACCAACAACGACCTTCGA
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