prot_H-elongata_contig92385.16693.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig92385.16693.1
Unique Nameprot_H-elongata_contig92385.16693.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length46
Homology
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BLAST of mRNA_H-elongata_contig92385.16693.1 vs. uniprot
Match: A0A7S0RGS6_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RGS6_9CHLO)

HSP 1 Score: 48.5 bits (114), Expect = 3.000e-5
Identity = 19/36 (52.78%), Postives = 25/36 (69.44%), Query Frame = 0 
Query:    1 DPSHAHAWQAWGLMEARVGNYEIARSLWESGLKTCP 36
            DP H H WQAWG+MEA +GN + AR L++ G+   P
Sbjct:  167 DPGHLHLWQAWGVMEASLGNLDRARQLYQEGVWADP 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92385.16693.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S0RGS6_9CHLO3.000e-552.78Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..45
e-value: 5.6E-8
score: 34.3
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 2..43
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1..38
score: 8.621

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig92385contigH-elongata_contig92385:1482..1619 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig92385.16693.1mRNA_H-elongata_contig92385.16693.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig92385 1482..1619 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig92385.16693.1 ID=prot_H-elongata_contig92385.16693.1|Name=mRNA_H-elongata_contig92385.16693.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
DPSHAHAWQAWGLMEARVGNYEIARSLWESGLKTCPVHGPLWQVL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom