mRNA_H-elongata_contig121817.1669.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121817.1669.1
Unique NamemRNA_H-elongata_contig121817.1669.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig121817.1669.1 vs. uniprot
Match: A0A6H5KSF9_9PHAE (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF9_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.410e-19
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 KRAVKYDVEAAQLGDNGVFWIDFASIFQYFKNVFMNWNPGLFSFRWEFLGRVPADLSP 174
            K AVKYD+E A L DNGVFW+DFASIFQYFKNVFMNWNP +FSFR+    R P ++ P
Sbjct:   69 KEAVKYDLETAMLKDNGVFWVDFASIFQYFKNVFMNWNPSVFSFRFVMHLRWPVNMGP 126
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BLAST of mRNA_H-elongata_contig121817.1669.1 vs. uniprot
Match: D8LU44_ECTSI (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU44_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.790e-19
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 KRAVKYDVEAAQLGDNGVFWIDFASIFQYFKNVFMNWNPGLFSFRWEFLGRVPADLSP 174
            K AVKYD+E A L DNGVFW+DFASIFQYFKNVFMNWNP +FSFR+    R P ++ P
Sbjct:   29 KEAVKYDLETAMLKDNGVFWVDFASIFQYFKNVFMNWNPSVFSFRFVMHLRWPVNMGP 86
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BLAST of mRNA_H-elongata_contig121817.1669.1 vs. uniprot
Match: A0A835Z8N9_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N9_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.950e-14
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 KRAVKYDVEAAQLGDNGVFWIDFASIFQYFKNVFMNWNPGLFSFRWEFLGRVPADLSP 174
            KRAV YD+ AAQL DNGVFWID+ SI ++FKNVF+NWNP LF +R    G  P    P
Sbjct:  132 KRAVGYDLAAAQLEDNGVFWIDWPSICRFFKNVFINWNPALFKYRSVLHGEWPVTQGP 189
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BLAST of mRNA_H-elongata_contig121817.1669.1 vs. uniprot
Match: A0A7S1C3Q6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3Q6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.650e-9
Identity = 24/54 (44.44%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 KRAVKYDVEAAQLGDNGVFWIDFASIFQYFKNVFMNWNPGLFSFRWEFLGRVPA 162
            K A+ YD + A++ DNG+FWID+ S+ Q+FK +++NWNP LF ++ +     PA
Sbjct:  109 KAALNYDQDKARMVDNGIFWIDYTSMLQFFKGIYLNWNPELFKYQRKLHATWPA 162
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BLAST of mRNA_H-elongata_contig121817.1669.1 vs. uniprot
Match: A0A7S1C5X4_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5X4_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.660e-9
Identity = 24/54 (44.44%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 KRAVKYDVEAAQLGDNGVFWIDFASIFQYFKNVFMNWNPGLFSFRWEFLGRVPA 162
            K A+ YD + A++ DNG+FWID+ S+ Q+FK +++NWNP LF ++ +     PA
Sbjct:  320 KAALNYDQDKARMVDNGIFWIDYTSMLQFFKGIYLNWNPELFKYQRKLHATWPA 373
[Close]
BLAST of mRNA_H-elongata_contig121817.1669.1 vs. uniprot
Match: D8LU46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU46_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 4.190e-9
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    7 AVKYDVEAAQ-LGDNGVFWIDFASIFQYFKNVFMNWNPGLFSFRWEFLGRVPADLSP 174
            AV Y  +  Q L D GVFW+DFAS+ QYF++VF+NWNP  F FR     R P ++ P
Sbjct:   24 AVNYPPQERQTLQDKGVFWVDFASVVQYFRHVFLNWNPNTFRFRNLTHLRWPVEIGP 80
[Close]
BLAST of mRNA_H-elongata_contig121817.1669.1 vs. uniprot
Match: UPI0004CD348D (calpain-7-like n=1 Tax=Microplitis demolitor TaxID=69319 RepID=UPI0004CD348D)

HSP 1 Score: 59.7 bits (143), Expect = 5.780e-9
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    1 KRAVKYDVEAAQLGDNGVFWIDFASIFQYFKNVFMNWNPGLFSFRWEFLGRVPADLSP 174
            +RA+ YD E+A   DNG+FWID+ASI ++F   ++NWNPGLF + +       A + P
Sbjct:  448 RRALNYDPESASQYDNGIFWIDYASICRFFDVFYLNWNPGLFKYTYCIHQMWNAGIGP 505
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BLAST of mRNA_H-elongata_contig121817.1669.1 vs. uniprot
Match: A0A0K2TNJ9_LEPSM (Calpain catalytic domain-containing protein n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2TNJ9_LEPSM)

HSP 1 Score: 59.7 bits (143), Expect = 5.780e-9
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    1 KRAVKYDVEAAQLGDNGVFWIDFASIFQYFKNVFMNWNPGLFSFRWEFLGRVPADLSP 174
            K A+ Y+ E+A   DNGVFWIDF S+ ++F+ ++MNWNP LF F +       A + P
Sbjct:  480 KAALNYNPESAANFDNGVFWIDFDSVLEFFEVIYMNWNPNLFKFSYSIHQSWDAGVGP 537
[Close]
BLAST of mRNA_H-elongata_contig121817.1669.1 vs. uniprot
Match: A0A7R8CUB0_LEPSM (CAPN7 n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A7R8CUB0_LEPSM)

HSP 1 Score: 59.7 bits (143), Expect = 5.830e-9
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    1 KRAVKYDVEAAQLGDNGVFWIDFASIFQYFKNVFMNWNPGLFSFRWEFLGRVPADLSP 174
            K A+ Y+ E+A   DNGVFWIDF S+ ++F+ ++MNWNP LF F +       A + P
Sbjct: 1615 KAALNYNPESAANFDNGVFWIDFDSVLEFFEVIYMNWNPNLFKFSYSIHQSWDAGVGP 1672
[Close]
BLAST of mRNA_H-elongata_contig121817.1669.1 vs. uniprot
Match: UPI000994DE7F (calpain-7-like n=1 Tax=Pseudomyrmex gracilis TaxID=219809 RepID=UPI000994DE7F)

HSP 1 Score: 58.9 bits (141), Expect = 1.080e-8
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    1 KRAVKYDVEAAQLGDNGVFWIDFASIFQYFKNVFMNWNPGLFSFRWEFLGRVPADLSP 174
            K A+ YD E+A   DNG+FWID+ SI Q+F   ++NWNPGLF++ +       A + P
Sbjct:  575 KEALNYDPESASQFDNGIFWIDYNSICQFFDVFYLNWNPGLFTYTYCIHQMWKAGIGP 632
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121817.1669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSF9_9PHAE1.410e-1968.97Calpain catalytic domain-containing protein n=1 Ta... [more]
D8LU44_ECTSI2.790e-1968.97Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A835Z8N9_9STRA2.950e-1460.34Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A7S1C3Q6_9STRA1.650e-944.44Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S1C5X4_9STRA1.660e-944.44Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
D8LU46_ECTSI4.190e-950.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI0004CD348D5.780e-944.83calpain-7-like n=1 Tax=Microplitis demolitor TaxID... [more]
A0A0K2TNJ9_LEPSM5.780e-944.83Calpain catalytic domain-containing protein n=2 Ta... [more]
A0A7R8CUB0_LEPSM5.830e-944.83CAPN7 n=1 Tax=Lepeophtheirus salmonis TaxID=72036 ... [more]
UPI000994DE7F1.080e-844.83calpain-7-like n=1 Tax=Pseudomyrmex gracilis TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121817contigH-elongata_contig121817:1631..1804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue3.6e-16
Seed eggNOG ortholog2880.D8LU44
KEGG koko:K08582
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929717.3133998-CDS-H-elongata_contig121817:1630..18041622929717.3133998-CDS-H-elongata_contig121817:1630..1804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121817 1631..1804 -
1691679130.5296364-CDS-H-elongata_contig121817:1630..18041691679130.5296364-CDS-H-elongata_contig121817:1630..1804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121817 1631..1804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121817.1669.1prot_H-elongata_contig121817.1669.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121817 1631..1804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121817.1669.1

>prot_H-elongata_contig121817.1669.1 ID=prot_H-elongata_contig121817.1669.1|Name=mRNA_H-elongata_contig121817.1669.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
KRAVKYDVEAAQLGDNGVFWIDFASIFQYFKNVFMNWNPGLFSFRWEFLG
RVPADLSP
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mRNA from alignment at H-elongata_contig121817:1631..1804-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121817.1669.1 ID=mRNA_H-elongata_contig121817.1669.1|Name=mRNA_H-elongata_contig121817.1669.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig121817:1631..1804- (Himanthalia elongata Himel1 dioecious)
AAAAGAGCCGTGAAGTACGATGTGGAGGCCGCACAGCTGGGCGACAACGG
CGTCTTCTGGATCGATTTCGCGTCTATCTTCCAATATTTCAAGAACGTTT
TCATGAACTGGAATCCGGGGCTCTTCAGCTTCAGGTGGGAGTTCCTCGGG
AGGGTACCCGCTGACCTGTCACCT
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Coding sequence (CDS) from alignment at H-elongata_contig121817:1631..1804-

>mRNA_H-elongata_contig121817.1669.1 ID=mRNA_H-elongata_contig121817.1669.1|Name=mRNA_H-elongata_contig121817.1669.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig121817:1631..1804- (Himanthalia elongata Himel1 dioecious)
AAAAGAGCCGTGAAGTACGATGTGGAGGCCGCACAGCTGGGCGACAACGG
CGTCTTCTGGATCGATTTCGCGTCTATCTTCCAATATTTCAAGAACGTTT
TCATGAACTGGAATCCGGGGCTCTTCAGCTTCAGGTGGGAGTTCCTCGGG
AGGGTACCCGCTGACCTGTCACCTAAAAGAGCCGTGAAGTACGATGTGGA
GGCCGCACAGCTGGGCGACAACGGCGTCTTCTGGATCGATTTCGCGTCTA
TCTTCCAATATTTCAAGAACGTTTTCATGAACTGGAATCCGGGGCTCTTC
AGCTTCAGGTGGGAGTTCCTCGGGAGGGTACCCGCTGACCTGTCACCT
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