prot_H-elongata_contig92063.16665.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig92063.16665.1
Unique Nameprot_H-elongata_contig92063.16665.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length54
Homology
BLAST of mRNA_H-elongata_contig92063.16665.1 vs. uniprot
Match: D8LMJ6_ECTSI (Suf domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMJ6_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.050e-15
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 0
Query:    1 NDEQNLRVLFERVLEEGAMPTDKARPVWERFVQLELCLSRMGGSLKRVERVEAR 54
            NDE+NLRVLFERVL   AMP ++AR VWERFVQLELCLS  GGSL + + VE R
Sbjct:  513 NDEENLRVLFERVLHPSAMPAERARLVWERFVQLELCLSSTGGSLAKAQDVERR 566          
BLAST of mRNA_H-elongata_contig92063.16665.1 vs. uniprot
Match: A0A2D4BN56_PYTIN (Suf domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BN56_PYTIN)

HSP 1 Score: 55.5 bits (132), Expect = 1.520e-7
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 0
Query:    1 NDEQNLRVLFERVLEEGAMPTDKARPVWERFVQLELCLSRMGGSLKRVERVEAR 54
            ND+ N+R LFE+VL    MPT+++RP+W+R+V  E  +   GG L  V +VEAR
Sbjct:  493 NDDNNMRSLFEKVL--AVMPTERSRPIWDRYVAFEHTMVANGGDLATVAKVEAR 544          
BLAST of mRNA_H-elongata_contig92063.16665.1 vs. uniprot
Match: A0A2D4BY66_PYTIN (Suf domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BY66_PYTIN)

HSP 1 Score: 55.5 bits (132), Expect = 1.530e-7
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 0
Query:    1 NDEQNLRVLFERVLEEGAMPTDKARPVWERFVQLELCLSRMGGSLKRVERVEAR 54
            ND+ N+R LFE+VL    MPT+++RP+W+R+V  E  +   GG L  V +VEAR
Sbjct:  525 NDDNNMRSLFEKVL--AVMPTERSRPIWDRYVAFEHTMVANGGDLATVAKVEAR 576          
BLAST of mRNA_H-elongata_contig92063.16665.1 vs. uniprot
Match: C3ZXR7_BRAFL (Suf domain-containing protein (Fragment) n=4 Tax=Branchiostoma TaxID=7737 RepID=C3ZXR7_BRAFL)

HSP 1 Score: 48.5 bits (114), Expect = 4.280e-5
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 0
Query:    1 NDEQNLRVLFERVLEEGAMPTDKARPVWERFVQLELCLSRMGGSLKRVERVEAR 54
            N++ N RVLFERVL  GA+P DK   +W +F++ E  +    G L  V +VE R
Sbjct:  446 NEDNNTRVLFERVLTSGALPVDKQGEIWAKFLEFECSI----GDLSSVLKVEKR 495          
BLAST of mRNA_H-elongata_contig92063.16665.1 vs. uniprot
Match: A0A267GAU1_9PLAT (Suf domain-containing protein n=6 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267GAU1_9PLAT)

HSP 1 Score: 48.5 bits (114), Expect = 4.280e-5
Identity = 22/50 (44.00%), Postives = 34/50 (68.00%), Query Frame = 0
Query:    1 NDEQNLRVLFERVLEEGAMPTDKARPVWERFVQLELCLSRMGGSLKRVER 50
            N++ N RVLFER L  G++PT+K+R +W +F++ E  +  +   LK VER
Sbjct:  450 NEDNNTRVLFERALTSGSVPTEKSRVIWAKFLEFETSVGDLASVLK-VER 498          
BLAST of mRNA_H-elongata_contig92063.16665.1 vs. uniprot
Match: UPI001FB1586F (cleavage stimulation factor subunit 77 isoform X1 n=3 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB1586F)

HSP 1 Score: 47.8 bits (112), Expect = 8.020e-5
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 0
Query:    1 NDEQNLRVLFERVLEEGAMPTDKARPVWERFVQLELCLSRMGGSLKRVER 50
            NDEQN+RVLFER L   ++P DK+  VW+RF Q E     +   LK VER
Sbjct:  426 NDEQNIRVLFERAL--SSLPQDKSIEVWDRFAQFEQTYGDLASMLK-VER 472          
BLAST of mRNA_H-elongata_contig92063.16665.1 vs. uniprot
Match: UPI0008119594 (cleavage stimulation factor subunit 3-like n=1 Tax=Rhagoletis zephyria TaxID=28612 RepID=UPI0008119594)

HSP 1 Score: 47.8 bits (112), Expect = 8.050e-5
Identity = 24/54 (44.44%), Postives = 34/54 (62.96%), Query Frame = 0
Query:    1 NDEQNLRVLFERVLEEGAMPTDKARPVWERFVQLELCLSRMGGSLKRVERVEAR 54
            N+E N+RVLFERVL   A+P DK+  +W +F++ E  +    G L  V +VE R
Sbjct:  499 NEENNIRVLFERVLSSDALPLDKSLEIWNKFLEFESQI----GDLPSVIKVEKR 548          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig92063.16665.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LMJ6_ECTSI2.050e-1570.37Suf domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A2D4BN56_PYTIN1.520e-748.15Suf domain-containing protein n=1 Tax=Pythium insi... [more]
A0A2D4BY66_PYTIN1.530e-748.15Suf domain-containing protein n=1 Tax=Pythium insi... [more]
C3ZXR7_BRAFL4.280e-544.44Suf domain-containing protein (Fragment) n=4 Tax=B... [more]
A0A267GAU1_9PLAT4.280e-544.00Suf domain-containing protein n=6 Tax=Macrostomum ... [more]
UPI001FB1586F8.020e-552.00cleavage stimulation factor subunit 77 isoform X1 ... [more]
UPI00081195948.050e-544.44cleavage stimulation factor subunit 3-like n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008847Suppressor of forkedPFAMPF05843Sufcoord: 1..54
e-value: 2.7E-6
score: 27.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..54
e-value: 3.0E-8
score: 35.2
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 1..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig92063contigH-elongata_contig92063:1987..2148 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig92063.16665.1mRNA_H-elongata_contig92063.16665.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig92063 1987..2148 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig92063.16665.1 ID=prot_H-elongata_contig92063.16665.1|Name=mRNA_H-elongata_contig92063.16665.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
NDEQNLRVLFERVLEEGAMPTDKARPVWERFVQLELCLSRMGGSLKRVER
VEAR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008847Suf
IPR011990TPR-like_helical_dom_sf