prot_H-elongata_contig121779.1665.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig121779.1665.1
Unique Nameprot_H-elongata_contig121779.1665.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length55
Homology
BLAST of mRNA_H-elongata_contig121779.1665.1 vs. uniprot
Match: A0A6H5L5U7_9PHAE (SRP54 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U7_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.680e-24
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0
Query:    1 QVASAADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKLDGDTRGGAALSVQ 55
            QVAS ADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTK+DGDTRGGAALSVQ
Sbjct:   48 QVASEADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQ 102          
BLAST of mRNA_H-elongata_contig121779.1665.1 vs. uniprot
Match: D8LN22_ECTSI (PFfh, plastid Ffh subunit of the signal recognition particle n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN22_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 8.770e-22
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0
Query:    1 QVASAADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKLDGDTRGGAALSVQ 55
            QVAS ADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTK+DGDTRGGAALSVQ
Sbjct:  305 QVASEADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKMDGDTRGGAALSVQ 359          
BLAST of mRNA_H-elongata_contig121779.1665.1 vs. uniprot
Match: C1FE02_MICCC (Type II secretory pathway family n=2 Tax=Micromonas TaxID=38832 RepID=C1FE02_MICCC)

HSP 1 Score: 82.0 bits (201), Expect = 6.880e-17
Identity = 42/55 (76.36%), Postives = 51/55 (92.73%), Query Frame = 0
Query:    1 QVASAADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKLDGDTRGGAALSVQ 55
            ++A+AADE+LLVVDAMTGQEAA L + F+E +GITGAVLTK+DGDTRGGAALSV+
Sbjct:  294 KIATAADEILLVVDAMTGQEAAALTAAFDEAVGITGAVLTKMDGDTRGGAALSVR 348          
BLAST of mRNA_H-elongata_contig121779.1665.1 vs. uniprot
Match: R7QHF1_CHOCR (Signal recognition particle SRP54 homolog ffh n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHF1_CHOCR)

HSP 1 Score: 81.6 bits (200), Expect = 8.750e-17
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 0
Query:    4 SAADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKLDGDTRGGAALSVQ 55
            S ADE LLVVDAMTGQEAATL   FN+++GITGA+LTKLDGDTRGGAALSVQ
Sbjct:  197 SKADETLLVVDAMTGQEAATLTRSFNDEVGITGAILTKLDGDTRGGAALSVQ 248          
BLAST of mRNA_H-elongata_contig121779.1665.1 vs. uniprot
Match: A0A835YMH5_9STRA (SRP54-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMH5_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 9.420e-17
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 0
Query:    7 DEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKLDGDTRGGAALSVQ 55
            DEVLLVVDAMTGQEAATL + FNE++GITGA+LTKLDGD+RGG+ALSVQ
Sbjct:  303 DEVLLVVDAMTGQEAATLTAAFNERVGITGAILTKLDGDSRGGSALSVQ 351          
BLAST of mRNA_H-elongata_contig121779.1665.1 vs. uniprot
Match: A0A2V3IRY4_9FLOR (Signal recognition particle protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRY4_9FLOR)

HSP 1 Score: 80.9 bits (198), Expect = 1.680e-16
Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = 0
Query:    7 DEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKLDGDTRGGAALSVQ 55
            DE LLVVDAMTGQEAATL   FNE++GITGA+LTKLDGDTRGGAALSVQ
Sbjct:  216 DETLLVVDAMTGQEAATLTRSFNEEVGITGAILTKLDGDTRGGAALSVQ 264          
BLAST of mRNA_H-elongata_contig121779.1665.1 vs. uniprot
Match: B4VXP3_9CYAN (Signal recognition particle protein n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 TaxID=118168 RepID=B4VXP3_9CYAN)

HSP 1 Score: 80.9 bits (198), Expect = 1.690e-16
Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 0
Query:    7 DEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKLDGDTRGGAALSVQ 55
            DEVLLVVDAMTGQEAATL   FN++IGITGA+LTKLDGDTRGGAALSV+
Sbjct:  214 DEVLLVVDAMTGQEAATLTHTFNQQIGITGAILTKLDGDTRGGAALSVR 262          
BLAST of mRNA_H-elongata_contig121779.1665.1 vs. uniprot
Match: A0A7S0VH70_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VH70_9CRYP)

HSP 1 Score: 79.3 bits (194), Expect = 3.900e-16
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 0
Query:    7 DEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKLDGDTRGGAALSVQ 55
            DEVLLVVDAMTGQEAA L   FN+ +GITGAVLTKLDGDTRGGAALSVQ
Sbjct:  299 DEVLLVVDAMTGQEAANLTKSFNDAVGITGAVLTKLDGDTRGGAALSVQ 347          
BLAST of mRNA_H-elongata_contig121779.1665.1 vs. uniprot
Match: A0A7S0TI92_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TI92_HEMAN)

HSP 1 Score: 79.3 bits (194), Expect = 5.630e-16
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 0
Query:    7 DEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKLDGDTRGGAALSVQ 55
            DEVLLVVDAMTGQEAA L   FN+ +GITGAVLTKLDGDTRGGAALSVQ
Sbjct:  305 DEVLLVVDAMTGQEAANLTKSFNDAVGITGAVLTKLDGDTRGGAALSVQ 353          
BLAST of mRNA_H-elongata_contig121779.1665.1 vs. uniprot
Match: A0A1X6NS89_PORUM (SRP54 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NS89_PORUM)

HSP 1 Score: 77.8 bits (190), Expect = 7.900e-16
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0
Query:    7 DEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKLDGDTRGGAALSVQ 55
            DE LLVVDAMTGQEAA L   FN+ +GITGA+LTKLDGDTRGGAALSVQ
Sbjct:   14 DETLLVVDAMTGQEAANLTRAFNDDVGITGAILTKLDGDTRGGAALSVQ 62          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121779.1665.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U7_9PHAE2.680e-2496.36SRP54 domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LN22_ECTSI8.770e-2296.36PFfh, plastid Ffh subunit of the signal recognitio... [more]
C1FE02_MICCC6.880e-1776.36Type II secretory pathway family n=2 Tax=Micromona... [more]
R7QHF1_CHOCR8.750e-1782.69Signal recognition particle SRP54 homolog ffh n=1 ... [more]
A0A835YMH5_9STRA9.420e-1783.67SRP54-type protein n=1 Tax=Tribonema minus TaxID=3... [more]
A0A2V3IRY4_9FLOR1.680e-1685.71Signal recognition particle protein n=1 Tax=Gracil... [more]
B4VXP3_9CYAN1.690e-1685.71Signal recognition particle protein n=1 Tax=Coleof... [more]
A0A7S0VH70_9CRYP3.900e-1685.71Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0TI92_HEMAN5.630e-1685.71Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A1X6NS89_PORUM7.900e-1681.63SRP54 domain-containing protein n=1 Tax=Porphyra u... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 1..55
e-value: 4.6E-17
score: 64.1
IPR000897Signal recognition particle, SRP54 subunit, GTPase domainPFAMPF00448SRP54coord: 5..55
e-value: 1.3E-16
score: 60.9
IPR022941Signal recognition particle, SRP54 subunitPANTHERPTHR11564GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINScoord: 5..55
IPR004780Signal recognition particle proteinPANTHERPTHR11564:SF7SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN, CHLOROPLASTICcoord: 5..55
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 6..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121779contigH-elongata_contig121779:1659..1823 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121779.1665.1mRNA_H-elongata_contig121779.1665.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig121779 1659..1823 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig121779.1665.1 ID=prot_H-elongata_contig121779.1665.1|Name=mRNA_H-elongata_contig121779.1665.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
QVASAADEVLLVVDAMTGQEAATLASVFNEKIGITGAVLTKLDGDTRGGA
ALSVQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000897SRP54_GTPase_dom
IPR022941SRP54
IPR004780SRP
IPR027417P-loop_NTPase