mRNA_H-elongata_contig121752.1664.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121752.1664.1
Unique NamemRNA_H-elongata_contig121752.1664.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig121752.1664.1 vs. uniprot
Match: A0A151U775_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151U775_CAJCA)

HSP 1 Score: 81.3 bits (199), Expect = 9.770e-18
Identity = 45/95 (47.37%), Postives = 59/95 (62.11%), Query Frame = 1
Query:   28 VWQMVERPKGKTVLGTIVVFKRKIDKDGRIEKYKC-LVAQGFKQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEI 309
            VW +VE PKG   +G   VFK K D  G IEKYK  LVA+GF Q   I Y+E  SP   + S+R+VL+++     E  Q+DV +A+L  D+EEEI
Sbjct:   11 VWDLVELPKGSKRVGCKWVFKTKHDSKGNIEKYKARLVAKGFTQKDDIDYKETFSPISKKDSLRIVLALVTHYDLELHQMDVKIAFLNGDLEEEI 105          
BLAST of mRNA_H-elongata_contig121752.1664.1 vs. uniprot
Match: A0A0A9Y7J8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7J8_LYGHE)

HSP 1 Score: 82.8 bits (203), Expect = 1.290e-17
Identity = 42/94 (44.68%), Postives = 60/94 (63.83%), Query Frame = 1
Query:   31 WQMVERPKGKTVLGTIVVFKRKIDKDGRIEKYKC-LVAQGFKQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEI 309
            W +V+RP+GKTV+G+  VF+ K+  DG +E+ K  LVA+GF Q+ G HY E  +     +SIR V+++ A    E  QLD   AYL  ++EEEI
Sbjct:   49 WTLVDRPEGKTVVGSRWVFRTKLKADGTVERRKARLVAKGFTQIPGTHYNETYTSVARLSSIRFVIALAAERNLELEQLDFTCAYLNGEIEEEI 142          
BLAST of mRNA_H-elongata_contig121752.1664.1 vs. uniprot
Match: A0A0V0GL59_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GL59_SOLCH)

HSP 1 Score: 79.7 bits (195), Expect = 7.590e-17
Identity = 34/94 (36.17%), Postives = 64/94 (68.09%), Query Frame = 1
Query:   31 WQMVERPKGKTVLGTIVVFKRKIDKDGRIEKYKC-LVAQGFKQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEI 309
            W+++E PKG   +G   ++K+K++K+G++E++K  LVA+G+KQ  G+ Y+E  +P     +IR+V+++ A   W   Q+DV  A+L  D++E++
Sbjct:   14 WELIELPKGHKTIGVKWIYKKKMNKEGKVERHKARLVAKGYKQEFGVDYKEVFAPVARLDTIRLVIALAAQHSWPIFQMDVKSAFLHGDLDEQV 107          
BLAST of mRNA_H-elongata_contig121752.1664.1 vs. uniprot
Match: A0A225WDK2_9STRA (Integrase, catalytic core protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WDK2_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 7.700e-17
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   25 GVWQMVERPKGKTVLGTIVVFKRKIDKDGRIEKYKC-LVAQGFKQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEI 309
            G W++V+ PKGK  L +  +FK K D  G IE+YK  LV +G++Q+K I YEE  +P     S+R++L+++A   WE  Q DVD A+L  D+ EE+
Sbjct:   71 GTWKLVKLPKGKRALTSKWIFKIKYDALGNIERYKARLVIRGYEQIKYIDYEEIFAPVIRLESLRLLLALVAINDWECEQTDVDTAFLNGDLAEEV 166          
BLAST of mRNA_H-elongata_contig121752.1664.1 vs. uniprot
Match: A0A075B0V5_ROZAC (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B0V5_ROZAC)

HSP 1 Score: 84.3 bits (207), Expect = 7.760e-17
Identity = 44/104 (42.31%), Postives = 64/104 (61.54%), Query Frame = 1
Query:    1 EIDGQTYRGVWQMVERPKGKTVLGTIVVFKRKIDKDGRIEKYKC-LVAQGFKQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEI 309
            E +     G W+++E P  +  +G+  VFK K ++ G +EKYK  LVAQGFKQVKG+ YEE  SP     SIR++L++ +A      QLDV  AYL +++  E+
Sbjct:  121 EYNALMSNGTWELMELPPDRKAIGSKWVFKTKYNERGEVEKYKARLVAQGFKQVKGVDYEETFSPVAKLNSIRIILAIASAEKLHVHQLDVLTAYLNSEITHEV 224          
BLAST of mRNA_H-elongata_contig121752.1664.1 vs. uniprot
Match: A0A2K3JLR7_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JLR7_TRIPR)

HSP 1 Score: 78.6 bits (192), Expect = 1.900e-16
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    1 EIDGQTYRGVWQMVERPKGKTVLGTIVVFKRKIDKDGRIEKYKC-LVAQGFKQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEI 309
            EI        W ++  P GK ++G   V+K K    G +EKYK  LVA+GF Q++G  + E  +P     ++R +LS+  A GWE  Q+DV  A+L  D+EEE+
Sbjct:    4 EIKALEDNKTWDVMLPPVGKKIVGCRWVYKVKYKASGEVEKYKARLVAKGFTQIEGEDFNETFAPVAKMTTVRCLLSVAVAKGWELHQMDVSNAFLHGDLEEEV 107          
BLAST of mRNA_H-elongata_contig121752.1664.1 vs. uniprot
Match: A0A151QVI1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QVI1_CAJCA)

HSP 1 Score: 83.2 bits (204), Expect = 2.020e-16
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = 1
Query:    1 EIDGQTYRGVWQMVERPKGKTVLGTIVVFKRKIDKDGRIEKYK-CLVAQGFKQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEI 309
            EI        W +   P+GK+ +G   V+K K   DG IE+YK CLVA+G+ Q++GI Y +  +P     ++R++LS+ A   W   QLDV+ A+L+ D+ EE+
Sbjct:  642 EIQALESNNTWSLCPLPQGKSSIGCKWVYKIKYRSDGSIERYKACLVAKGYTQIEGIDYHDTFAPVAKLVTVRLLLSIAAIKNWSLHQLDVNNAFLQGDLNEEV 745          
BLAST of mRNA_H-elongata_contig121752.1664.1 vs. uniprot
Match: UPI0010A50C1C (uncharacterized protein LOC114756741 n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A50C1C)

HSP 1 Score: 82.8 bits (203), Expect = 2.350e-16
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    1 EIDGQTYRGVWQMVERPKGKTVLGTIVVFKRKIDKDGRIEKYKC-LVAQGFKQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEI 309
            EID       W +V  PKGK  +G   VFK K   DG I+KYK  LVA+G+ Q +GI Y E  SP     ++R++L + A   W A  +DV+ A+L+ D++EE+
Sbjct:  267 EIDTLENNRTWDIVHLPKGKKAIGCKWVFKMKYRPDGSIDKYKARLVAKGYTQREGIDYHETFSPVVKMVTVRVILKIAAVNKWNAYHIDVNNAFLQGDLKEEV 370          
BLAST of mRNA_H-elongata_contig121752.1664.1 vs. uniprot
Match: A0A225W7G1_9STRA (Gag-pol Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W7G1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.530e-16
Identity = 42/104 (40.38%), Postives = 65/104 (62.50%), Query Frame = 1
Query:    7 DGQTY--RGVWQMVERPKGKTVLGTIVVFKRKIDKDGRIEKYKC-LVAQGFKQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEI 309
            +GQ+    G W+++  P GK  L +  +FK K D DG +E+ K  LV +GF+QVK I Y+E  +P      +R+ L+++A + WE  Q DVD+A+L  D+EEE+
Sbjct:  252 EGQSLISHGTWKLMHLPNGKKALTSRWIFKIKYDADGNVERCKARLVIRGFEQVKYIDYDEIFAPVIRLEYLRIPLTLVAIMDWECHQTDVDIAFLNGDMEEEV 355          
BLAST of mRNA_H-elongata_contig121752.1664.1 vs. uniprot
Match: A0A1S4D038_TOBAC (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4D038_TOBAC)

HSP 1 Score: 82.4 bits (202), Expect = 2.580e-16
Identity = 39/104 (37.50%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 EIDGQTYRGVWQMVERPKGKTVLGTIVVFKRKIDKDGRIEKYKC-LVAQGFKQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVEEEI 309
            E+      G W +V R     V+G+  +FK K   DG +E++K  LVA+G+ Q++G+++++  SP    A+IR+VLS+I AL W+ +QL+V  A+L  D++E++
Sbjct:    4 ELQALRSNGTWVLVPRKSNMNVVGSRWMFKTKFHFDGFVERFKARLVAKGYNQIEGVYFDDTFSPVVKAATIRVVLSIIIALNWDIKQLNVKNAFLHGDLKEKV 107          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121752.1664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151U775_CAJCA9.770e-1847.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A9Y7J8_LYGHE1.290e-1744.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0GL59_SOLCH7.590e-1736.17Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A225WDK2_9STRA7.700e-1743.75Integrase, catalytic core protein n=1 Tax=Phytopht... [more]
A0A075B0V5_ROZAC7.760e-1742.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2K3JLR7_TRIPR1.900e-1638.46Retrovirus-related Pol polyprotein from transposon... [more]
A0A151QVI1_CAJCA2.020e-1638.46Retrovirus-related Pol polyprotein from transposon... [more]
UPI0010A50C1C2.350e-1641.35uncharacterized protein LOC114756741 n=2 Tax=Proso... [more]
A0A225W7G1_9STRA2.530e-1640.38Gag-pol Polyprotein n=1 Tax=Phytophthora megakarya... [more]
A0A1S4D038_TOBAC2.580e-1637.50uncharacterized mitochondrial protein AtMg00810-li... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121752contigH-elongata_contig121752:488..799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score87.4
Seed ortholog evalue4.2e-15
Seed eggNOG ortholog102107.XP_008237389.1
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929716.7796216-CDS-H-elongata_contig121752:487..7991622929716.7796216-CDS-H-elongata_contig121752:487..799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121752 488..799 -
1691679130.3185143-CDS-H-elongata_contig121752:487..7991691679130.3185143-CDS-H-elongata_contig121752:487..799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121752 488..799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121752.1664.1prot_H-elongata_contig121752.1664.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121752 488..799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121752.1664.1

>prot_H-elongata_contig121752.1664.1 ID=prot_H-elongata_contig121752.1664.1|Name=mRNA_H-elongata_contig121752.1664.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
EIDGQTYRGVWQMVERPKGKTVLGTIVVFKRKIDKDGRIEKYKCLVAQGF
KQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEARQLDVDMAYLEADVE
EEI*
back to top

mRNA from alignment at H-elongata_contig121752:488..799-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121752.1664.1 ID=mRNA_H-elongata_contig121752.1664.1|Name=mRNA_H-elongata_contig121752.1664.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at H-elongata_contig121752:488..799- (Himanthalia elongata Himel1 dioecious)
GAGATAGATGGGCAAACGTATCGAGGCGTGTGGCAGATGGTGGAGCGCCC AAAAGGGAAGACGGTGTTGGGCACGATAGTAGTTTTCAAGCGCAAAATCG ACAAGGATGGAAGGATTGAAAAGTATAAATGTCTCGTGGCGCAGGGTTTC AAGCAGGTCAAAGGCATACACTACGAGGAATACTCCTCTCCGACTCCTGC GCAGGCCAGCATTAGGATGGTACTCAGCATGATCGCGGCTCTCGGCTGGG AGGCGCGGCAGCTGGATGTCGACATGGCCTACCTGGAGGCCGATGTGGAG GAGGAGATCTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig121752:488..799-

>mRNA_H-elongata_contig121752.1664.1 ID=mRNA_H-elongata_contig121752.1664.1|Name=mRNA_H-elongata_contig121752.1664.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig121752:488..799- (Himanthalia elongata Himel1 dioecious)
GAGATAGATGGGCAAACGTATCGAGGCGTGTGGCAGATGGTGGAGCGCCC
AAAAGGGAAGACGGTGTTGGGCACGATAGTAGTTTTCAAGCGCAAAATCG
ACAAGGATGGAAGGATTGAAAAGTATAAATGTCTCGTGGCGCAGGGTTTC
AAGCAGGTCAAAGGCATACACTACGAGGAATACTCCTCTCCGACTCCTGC
GCAGGCCAGCATTAGGATGGTACTCAGCATGATCGCGGCTCTCGGCTGGG
AGGCGCGGCAGCTGGATGTCGACATGGCCTACCTGGAGGCCGATGTGGAG
GAGGAGATCTAAGAGATAGATGGGCAAACGTATCGAGGCGTGTGGCAGAT
GGTGGAGCGCCCAAAAGGGAAGACGGTGTTGGGCACGATAGTAGTTTTCA
AGCGCAAAATCGACAAGGATGGAAGGATTGAAAAGTATAAATGTCTCGTG
GCGCAGGGTTTCAAGCAGGTCAAAGGCATACACTACGAGGAATACTCCTC
TCCGACTCCTGCGCAGGCCAGCATTAGGATGGTACTCAGCATGATCGCGG
CTCTCGGCTGGGAGGCGCGGCAGCTGGATGTCGACATGGCCTACCTGGAG
GCCGATGTGGAGGAGGAGATCTAA
back to top