mRNA_H-elongata_contig91850.16639.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig91850.16639.1
Unique NamemRNA_H-elongata_contig91850.16639.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig91850.16639.1 vs. uniprot
Match: D8LQ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ27_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 8.250e-29
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:    7 MPPVEREAKLHLVKYEQAGFVRGYEALCDQQQVRLRKRPEFADLETIGVAEGLGDPSIVLK 189
            MP VEREAKLHLVKYEQAGFVRGYEALCDQQQVRLRKRPEFADLE +GV EGL DP+IVL+
Sbjct:  333 MPAVEREAKLHLVKYEQAGFVRGYEALCDQQQVRLRKRPEFADLENVGVEEGLADPNIVLR 393
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig91850.16639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ27_ECTSI8.250e-2988.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig91850contigH-elongata_contig91850:378..1570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size192
Cds size189
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig91850.16639.1prot_H-elongata_contig91850.16639.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig91850 378..1567 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931316.1887808-CDS-H-elongata_contig91850:377..5121622931316.1887808-CDS-H-elongata_contig91850:377..512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91850 378..512 -
1691679786.6085389-CDS-H-elongata_contig91850:377..5121691679786.6085389-CDS-H-elongata_contig91850:377..512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91850 378..512 -
1622931316.2048218-CDS-H-elongata_contig91850:1513..15671622931316.2048218-CDS-H-elongata_contig91850:1513..1567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91850 1514..1567 -
1691679786.6212623-CDS-H-elongata_contig91850:1513..15671691679786.6212623-CDS-H-elongata_contig91850:1513..1567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91850 1514..1567 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931316.2247787-UTR-H-elongata_contig91850:1567..15701622931316.2247787-UTR-H-elongata_contig91850:1567..1570Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig91850 1568..1570 -
1691679786.6313355-UTR-H-elongata_contig91850:1567..15701691679786.6313355-UTR-H-elongata_contig91850:1567..1570Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig91850 1568..1570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig91850.16639.1

>prot_H-elongata_contig91850.16639.1 ID=prot_H-elongata_contig91850.16639.1|Name=mRNA_H-elongata_contig91850.16639.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MMPPVEREAKLHLVKYEQAGFVRGYEALCDQQQVRLRKRPEFADLETIGV
AEGLGDPSIVLK*
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mRNA from alignment at H-elongata_contig91850:378..1570-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig91850.16639.1 ID=mRNA_H-elongata_contig91850.16639.1|Name=mRNA_H-elongata_contig91850.16639.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1193bp|location=Sequence derived from alignment at H-elongata_contig91850:378..1570- (Himanthalia elongata Himel1 dioecious)
CAGATGATGCCCCCAGTAGAGCGGGAGGCCAAGCTCCACCTTGTCAAGTA
CGAGCAGGTGAGTTTCCGACCACTGTTCACAACACTAATGAAATAACTAG
AGCTTTTTCGACTGTTAATAGACTACAATAGTAACCGTTCTTTTTTTTGA
CCATGTATCTATCTTAATCTAAAAAGTAAACACTTTCCAACCTCTCTACG
CAACGTATGATCACTACTCGGCTTTCGACGGACGTGTGTGCGATGGCCGG
GGTGGTTATCTGCTTGCGTAAGCGGCGTGTTGTTTGCGATGTTGGTGCGT
CTCTTGTCCCGACTTCAAGTATGACATACACCGATCTTGACAACTTGCTC
GCTCGCTTTATCAAAAGAGTCCAAGGGCGCGCCGCGGATGCGTGGGCGAA
GGTGTCTGCGCGGTTTTGTGTTTCGAGAGAGGAGGGGAAGAGGAAGGAGC
TCAATCGAGCAACGATCCGTTATCTCTCCTGTCTTTCATCGATGATGAAG
TTGTTTCGTGCACTACACTTTAGTAAAGGCAGCTCTTGTATGTGAAACCT
CATCTCAGAACTACCCTCCCCTATCTACACATAGCGGGGGTAAAGACGGG
GGACGGCGACCGTGGAGCATTTTCTCGTCTTTTTTTCCGTCCATTTTTGT
TGTTGTTGTTGCTATTATTAGTACTTTTTGTGAGGTCCTCGGATGAAACC
ATAATCGATTTTTTTGGTACCCTCTCCCTTAGGCGCAATCAAGAGTCTCC
AAAATCAGCAAAAGTGTGTTGGTGGTATTTCTATTTGTATGCTCCCGTCG
TTTCCCGAATGCACTTACCGTAGTAATGTTTTTCTTTTGTTTGTTTTGTT
TTGTTGATTTAAGCCAAAGATAAAAATGACCTTTTTGTGGATAGATTCTC
GAGAAAAGATGTAATCTCAAGATTTTAAAAAATAGAAATAAAATACGCGT
ATAGATGCATACAAATACATACACTCATCAAGACATATCCGCCTGCTGTT
TGTTTTGGCTCACTTCCGTATCGCGCCCGATCAAATCTTGGAAAACCAAC
ACCGTAAGGCTGGTTTTGTTCGTGGTTACGAGGCGTTATGCGACCAGCAG
CAGGTGAGGCTAAGGAAACGGCCGGAGTTCGCCGACCTCGAGACTATCGG
GGTGGCGGAGGGGCTAGGCGACCCATCCATCGTCCTCAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig91850:378..1570-

>mRNA_H-elongata_contig91850.16639.1 ID=mRNA_H-elongata_contig91850.16639.1|Name=mRNA_H-elongata_contig91850.16639.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig91850:378..1570- (Himanthalia elongata Himel1 dioecious)
ATGATGCCCCCAGTAGAGCGGGAGGCCAAGCTCCACCTTGTCAAGTACGA
GCAGATGATGCCCCCAGTAGAGCGGGAGGCCAAGCTCCACCTTGTCAAGT
ACGAGCAGGCTGGTTTTGTTCGTGGTTACGAGGCGTTATGCGACCAGCAG
CAGGTGAGGCTAAGGAAACGGCCGGAGTTCGCCGACCTCGAGACTATCGG
GGTGGCGGAGGGGCTAGGCGACCCATCCATCGTCCTCAAGTGAGCTGGTT
TTGTTCGTGGTTACGAGGCGTTATGCGACCAGCAGCAGGTGAGGCTAAGG
AAACGGCCGGAGTTCGCCGACCTCGAGACTATCGGGGTGGCGGAGGGGCT
AGGCGACCCATCCATCGTCCTCAAGTGA
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