mRNA_H-elongata_contig91800.16637.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig91800.16637.1
Unique NamemRNA_H-elongata_contig91800.16637.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig91800.16637.1 vs. uniprot
Match: D7FIC2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIC2_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 4.880e-23
Identity = 66/124 (53.23%), Postives = 83/124 (66.94%), Query Frame = 1 
Query:  250 DGLELPSELLLKVKAEGLKRMQDEALRARHQEEEKEAEAVEASLEGTGGRSARIKSVSGDPPRSDNFQLVVLGRDEGSAADGADSKAQAAENAQKFLRERTAKQRRVSHSVFKARKRLGPSPEF 621
            DGLELPS+LLL+VK+ GL+RM+ + L A    EE+            G R AR K+  GD  RSDNF+LVVL  D+G      +SKA AAE+A+ FLR+R   ++RVSHS+FKARKRLGPSP F
Sbjct:   99 DGLELPSDLLLRVKSGGLQRMEADVLEA----EEQAXXXXXXXXXXXGRRKARAKA--GDASRSDNFRLVVLDEDDGGVDADDESKAHAAESAKNFLRDRMGSRKRVSHSLFKARKRLGPSPNF 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig91800.16637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIC2_ECTSI4.880e-2353.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig91800contigH-elongata_contig91800:431..1941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_001350.1
Exons2
Model size1263
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig91800.16637.1prot_H-elongata_contig91800.16637.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig91800 1070..1632 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931316.022169-UTR-H-elongata_contig91800:430..10691622931316.022169-UTR-H-elongata_contig91800:430..1069Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig91800 431..1069 -
1691679786.5338762-UTR-H-elongata_contig91800:430..10691691679786.5338762-UTR-H-elongata_contig91800:430..1069Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig91800 431..1069 -
1622931316.0811758-UTR-H-elongata_contig91800:1632..19411622931316.0811758-UTR-H-elongata_contig91800:1632..1941Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig91800 1633..1941 -
1691679786.5704668-UTR-H-elongata_contig91800:1632..19411691679786.5704668-UTR-H-elongata_contig91800:1632..1941Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig91800 1633..1941 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931316.0373209-CDS-H-elongata_contig91800:1069..12531622931316.0373209-CDS-H-elongata_contig91800:1069..1253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91800 1070..1253 -
1691679786.544102-CDS-H-elongata_contig91800:1069..12531691679786.544102-CDS-H-elongata_contig91800:1069..1253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91800 1070..1253 -
1622931316.0596192-CDS-H-elongata_contig91800:1501..16321622931316.0596192-CDS-H-elongata_contig91800:1501..1632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91800 1502..1632 -
1691679786.5542724-CDS-H-elongata_contig91800:1501..16321691679786.5542724-CDS-H-elongata_contig91800:1501..1632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91800 1502..1632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig91800.16637.1

>prot_H-elongata_contig91800.16637.1 ID=prot_H-elongata_contig91800.16637.1|Name=mRNA_H-elongata_contig91800.16637.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MQDEALRARHQEEEKEAEAVEASLEGTGGRSARIKSVSGDPPRSDNFQLV
VLGRDEGSAADGADSKAQAAENAQKFLRERTAKQRRVSHSVFKARKRLGP
SPEF*
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mRNA from alignment at H-elongata_contig91800:431..1941-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig91800.16637.1 ID=mRNA_H-elongata_contig91800.16637.1|Name=mRNA_H-elongata_contig91800.16637.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1511bp|location=Sequence derived from alignment at H-elongata_contig91800:431..1941- (Himanthalia elongata Himel1 dioecious)
GATTATACAGACGGGGAGCAGCAGAGCAGCGACGACGAAGCGCCGGACGA
GGTGAGCACCACAGCCGCCGCAGCACTTGCCGGGAACCGGAAAAAGGCCG
AGCAGCAAGCTCGCCGCGCCGCAGGTGCCTCCGCCGCAAAACCCAAGAGG
AAACGCTCGAGGAGTTCCAAAGTCATTCGCGAAAACGTCTCCGCCGGTGG
TGTCGGGGATAATGTCGAGGCTGACGCAGGCGCCGAGGCTAGTGGAGACG
ACGGGCTTGAGCTCCCCTCGGAGCTTCTGCTGAAGGTTAAGGCGGAGGGC
TTGAAGCGAATGCAGGACGAGGCTTTAAGAGCGAGGCACCAGGAAGAGGA
AAAAGAGGCAGAGGCCGTGGAGGCCTCGCTCGAGGGCACAGGAGGGCGTT
CCGCGAGGATAAAGAGCGTTTCTGGTGATCCGCCCCGGAGGTGAGAGCGA
CATCCATCACCGATCAATCTGGCTCGGCATTATAGGCTTTTTTTCGCCAC
GTTGTTCTTTCGTCGAGGACTCGCACGACACAGCCCCACTTGCGCTGCGC
TGTGCCAAGCGCGTGTAGAAACTTCGGATTACCTGGCTCGTAGTTTAGTG
AAAAGTAAATTGCTCTTTTGAGTTCATCCAGCCCCCCCTGACTTATGATC
ACGTCGGTGAATCACCTCCCCCCCCCTATCTATTGCAGCGACAACTTTCA
GCTGGTGGTGTTAGGCCGGGATGAAGGCAGTGCAGCCGACGGCGCGGATA
GCAAGGCGCAGGCCGCGGAAAATGCGCAGAAATTTCTGCGCGAGCGCACG
GCCAAGCAGAGACGCGTCAGCCACAGCGTCTTTAAGGCCCGCAAGCGCCT
CGGGCCTTCTCCTGAATTCTAGCCCAGGGCAGAGCTATCGAGCGTCTCTC
GAGAGCGTGCATGTCATTGATCTGTAATTGACACGCGATAATTGAGGGCG
CCGGAAGGTCTCATTCGTTTCGCGTCGTGTACCCCTAAGGCGCTTAGAAG
CAAAGTATCGTTTTTCTTGCTGCGAAACACTCGAAAAACAGTGAGATAAC
AACGTGTGCGGTGGGGCGCGCGTGTGCCATCATCTCTTTTGGCCTAGGGC
ATGGGGTGAAATATACCACGAGCAAAGCTCATTCTTCATCCTTCATACGA
AGTATGTTATGAATCAGCTTGTCGATTTAGGTTTGATCCGTCTCTCGATA
TTCCCCGTCGTCTCCCTGGGGTCAACAAGGTTTAGAGTTTAGGTGTTTCA
TCCGCGGAATGTACCGTAGGATGCTCGAATTAGACAGGCAGGGGATGACG
CCCCGCACACTTCCGAGAAGATCTCCACCCGTCTGTACCGTACCGTACGT
ACCGTAACCCTCTCTAGTACCTAGGTATTATAGTTCTTGTATTTGGATAT
GAGTGAAGGATGATTTTACTAATAACTAATATTCACATCGCCGGGGACAG
GAATCCCCTCTCTCCCCCCCCCGCCGCCCCCCTTCTTTTTTTATGTATCA
ACTACACGCAC
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Coding sequence (CDS) from alignment at H-elongata_contig91800:431..1941-

>mRNA_H-elongata_contig91800.16637.1 ID=mRNA_H-elongata_contig91800.16637.1|Name=mRNA_H-elongata_contig91800.16637.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig91800:431..1941- (Himanthalia elongata Himel1 dioecious)
ATGCAGGACGAGGCTTTAAGAGCGAGGCACCAGGAAGAGGAAAAAGAGGC
AGAGGCCGTGGAGGCCTCGCTCGAGGGCACAGGAGGGCGTTCCGCGAGGA
TAAAGAGCGTTTCTGGTGATCCGCCCCGGAGATGCAGGACGAGGCTTTAA
GAGCGAGGCACCAGGAAGAGGAAAAAGAGGCAGAGGCCGTGGAGGCCTCG
CTCGAGGGCACAGGAGGGCGTTCCGCGAGGATAAAGAGCGTTTCTGGTGA
TCCGCCCCGGAGCGACAACTTTCAGCTGGTGGTGTTAGGCCGGGATGAAG
GCAGTGCAGCCGACGGCGCGGATAGCAAGGCGCAGGCCGCGGAAAATGCG
CAGAAATTTCTGCGCGAGCGCACGGCCAAGCAGAGACGCGTCAGCCACAG
CGTCTTTAAGGCCCGCAAGCGCCTCGGGCCTTCTCCTGAATTCTAGCGAC
AACTTTCAGCTGGTGGTGTTAGGCCGGGATGAAGGCAGTGCAGCCGACGG
CGCGGATAGCAAGGCGCAGGCCGCGGAAAATGCGCAGAAATTTCTGCGCG
AGCGCACGGCCAAGCAGAGACGCGTCAGCCACAGCGTCTTTAAGGCCCGC
AAGCGCCTCGGGCCTTCTCCTGAATTCTAG
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