prot_H-elongata_contig12174.1663.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12174.1663.1
Unique Nameprot_H-elongata_contig12174.1663.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length208
Homology
[Close]
BLAST of mRNA_H-elongata_contig12174.1663.1 vs. uniprot
Match: D8LK41_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK41_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 2.220e-78
Identity = 140/211 (66.35%), Postives = 153/211 (72.51%), Query Frame = 0 
Query:   18 SVTLFLLASWLVMYGIRLQRRVMGHPRWEPLDRRQRLKILCRINGVLVVCAACFLLRVAVLSSALFVRSRHRAEEMNRLLFEFLARWVSGLIPGVALLHIMCKTKKPADDRPPTDRIRPNADNESEPSREPLLPRRGGTSSKGGMIGMSANTRGAS-----SSNMREGDGGSGGAT----------------DSFVYHVVRSQQDRTVTTI 207
            SVTLFLLASWLV+YGIRLQRRVMGHPRWEPLDRRQRLKILCRINGVLVVCAACFL+RVAVLSSALFVRSRHRAE+MNRLLFE LARWVSGLIPGVALLHIMCKTKKP +DRPP D++R +  NE +P  EPLLP   G    GG + M+      S     SSN R G                        DSF Y +VRSQ++RT TTI
Sbjct:  181 SVTLFLLASWLVLYGIRLQRRVMGHPRWEPLDRRQRLKILCRINGVLVVCAACFLVRVAVLSSALFVRSRHRAEDMNRLLFEVLARWVSGLIPGVALLHIMCKTKKPGEDRPPPDQMRLSVVNEDQPLNEPLLPTHHGG---GGYVSMAKKKPNGSAGRGTSSNSRSGXXXXXXXXXXXXXXXXXXXXXXXXDSFAYQIVRSQRERTETTI 388
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12174.1663.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK41_ECTSI2.220e-7866.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 36..55
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..12
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 101..119
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 120..207
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 82..100
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 56..81
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 13..35
NoneNo IPR availableTMHMMTMhelixcoord: 100..119
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
NoneNo IPR availableTMHMMTMhelixcoord: 56..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12174contigH-elongata_contig12174:1347..4359 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12174.1663.1mRNA_H-elongata_contig12174.1663.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12174 757..6390 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12174.1663.1 ID=prot_H-elongata_contig12174.1663.1|Name=mRNA_H-elongata_contig12174.1663.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=208bp
MVTHRQGVIVDDGLSACSVTLFLLASWLVMYGIRLQRRVMGHPRWEPLDR
RQRLKILCRINGVLVVCAACFLLRVAVLSSALFVRSRHRAEEMNRLLFEF
LARWVSGLIPGVALLHIMCKTKKPADDRPPTDRIRPNADNESEPSREPLL
PRRGGTSSKGGMIGMSANTRGASSSNMREGDGGSGGATDSFVYHVVRSQQ
DRTVTTI*
back to top