mRNA_H-elongata_contig91799.16635.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig91799.16635.1
Unique NamemRNA_H-elongata_contig91799.16635.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig91799.16635.1 vs. uniprot
Match: D8LLZ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ3_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 2.150e-46
Identity = 78/116 (67.24%), Postives = 94/116 (81.03%), Query Frame = 1 
Query:    1 QLLGTDKTPIDVSVLYPKQWTVTKTPGKQISIQDYKYTDRAFSLSTPLPSGKRSLNDLPVSFYTDVLFDLNGPYGNFGKVEDFKVIQTKTAEKGKRTY--VDLKFAAPTQTVMQVS 342
            +L G+ + PI VSVLYPKQWTVTKT GK I+IQD KYTDRAFSL+ PLPSG +S+ D+P+SF+TD LF L+GPYG FGKV+DFKVI  K+  KGKR Y  VDLKF+APTQ ++Q S
Sbjct:   88 ELNGSGQQPIAVSVLYPKQWTVTKTAGKSINIQDMKYTDRAFSLAMPLPSGTKSVGDIPLSFFTDALFSLDGPYGTFGKVDDFKVIGAKSEAKGKRDYRYVDLKFSAPTQGLLQES 203
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BLAST of mRNA_H-elongata_contig91799.16635.1 vs. uniprot
Match: A0A8J5XFB9_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XFB9_DIALT)

HSP 1 Score: 65.9 bits (159), Expect = 2.160e-10
Identity = 31/98 (31.63%), Postives = 60/98 (61.22%), Query Frame = 1 
Query:   28 IDVSVLYPKQWTVTKTPGKQISIQDYKYTDRAFSLSTPLPSGKRSLNDLPVSFYTDVLFDLNGPYGNFGKVEDFKVIQTKTAEKGKRTY--VDLKFAA 315
            + V+  +PK WT  +  G+ + +++ + +D AF L+   P G +S+  LP +F+T  LF  +G +G +G V+DF+V+ ++  E+    Y  +D++F+A
Sbjct:  136 VGVTFTFPKAWTPAR--GQNVDVRNIRTSDGAFLLALRAPDGAQSVRALPDAFFTRALFAPDGKFGQYGAVDDFRVLSSRVVERDGVPYATLDVRFSA 231
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BLAST of mRNA_H-elongata_contig91799.16635.1 vs. uniprot
Match: A0A7S0M0T2_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M0T2_9CRYP)

HSP 1 Score: 60.5 bits (145), Expect = 2.080e-8
Identity = 34/112 (30.36%), Postives = 60/112 (53.57%), Query Frame = 1 
Query:    1 QLLGTDKTPIDVSVLYPKQWTVTKTPGKQISIQDYKYTDRAFSL-----STPLPSGKRSLNDLPVSFYTDVLFDLNGPYGNFGKVEDFKVIQTKTAEKGKRTY--VDLKFAA 315
            +L+  +  P+ +S + PK W ++   G  I+IQDY   D A+ +       P  +     ++L  S+    +FD+NG YG FGK++D +V+++    +G   Y  VD KF++
Sbjct:  113 ELVNGNGKPVLISFVRPKDWKISTNTG--IAIQDYITADSAYVIVCPASEKPAATDAADASELDPSYLLSKVFDINGRYGAFGKIDDVRVLKSDARREGGGIYRYVDFKFSS 222
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BLAST of mRNA_H-elongata_contig91799.16635.1 vs. uniprot
Match: A0A0M0K5K4_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K5K4_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 4.390e-8
Identity = 29/72 (40.28%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:   46 YPKQWTVTKTPGKQISIQDYKYTDRAFSLSTPLPSGKRSLNDLPVSFYTDVLFDLNGPYGNFGKVEDFKVIQ 261
            YP++WT+   P   + +++ K +D AF L+ PLP GK ++  L   F+ +V+FD  G YG +G V+D KVI+
Sbjct:   41 YPEEWTLAGGPN--LDVRNVKESDSAFVLAAPLPLGK-TIEILDEEFFLNVIFDPQGKYGQYGAVDDRKVIE 109
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BLAST of mRNA_H-elongata_contig91799.16635.1 vs. uniprot
Match: A0A7S3TCW7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TCW7_EMIHU)

HSP 1 Score: 58.5 bits (140), Expect = 8.520e-8
Identity = 29/76 (38.16%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:   31 DVSVLYPKQWTVTKTPGKQISIQDYKYTDRAFSLSTPLPSGKRSLNDLPVSFYTDVLFDLNGPYGNFGKVEDFKVI 258
            +V+  +P  WT+   P   + ++D + +D AF L   LP+G+ +   LP +F+ D+LFD  G YG +G+VED KV+
Sbjct:  109 EVAFAFPAAWTLAGGPN--LDVRDVRQSDSAFLLVGALPAGQ-AFESLPDNFFLDLLFDPAGKYGQYGQVEDRKVL 181
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BLAST of mRNA_H-elongata_contig91799.16635.1 vs. uniprot
Match: A0A7S2C8B0_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2C8B0_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 1.230e-6
Identity = 26/71 (36.62%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:   55 QWTVTKTPGKQISIQDYKYTDRAFSLSTPLPSGKRSLNDLPVSFYTDVLFDLNGPYGNFGKVEDFKVIQTK 267
            QWT+   P   + +++ + +D AF L  PLP G+ +   LP  ++ DV+FD  G YG +G+V+D KV++++
Sbjct:    2 QWTLATGPN--LDVRNVRESDSAFVLVAPLPPGQ-TFAGLPNDWFLDVIFDPMGKYGQYGQVDDRKVVKSE 69
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig91799.16635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LLZ3_ECTSI2.150e-4667.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J5XFB9_DIALT2.160e-1031.63Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S0M0T2_9CRYP2.080e-830.36Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A0M0K5K4_9EUKA4.390e-840.28Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A7S3TCW7_EMIHU8.520e-838.16Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S2C8B0_9EUKA1.230e-636.62Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig91799contigH-elongata_contig91799:1049..2446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.8
Seed ortholog evalue7.3e-37
Seed eggNOG ortholog2880.D8LLZ3
EggNOG OGs2EWBM@1,2SY6C@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_002220.1
Exons4
Model size342
Cds size342
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig91799.16635.1prot_H-elongata_contig91799.16635.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig91799 1049..2446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931315.8695712-CDS-H-elongata_contig91799:1048..11001622931315.8695712-CDS-H-elongata_contig91799:1048..1100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91799 1049..1100 -
1691679786.463598-CDS-H-elongata_contig91799:1048..11001691679786.463598-CDS-H-elongata_contig91799:1048..1100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91799 1049..1100 -
1622931315.883076-CDS-H-elongata_contig91799:1583..16601622931315.883076-CDS-H-elongata_contig91799:1583..1660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91799 1584..1660 -
1691679786.4776337-CDS-H-elongata_contig91799:1583..16601691679786.4776337-CDS-H-elongata_contig91799:1583..1660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91799 1584..1660 -
1622931315.8971462-CDS-H-elongata_contig91799:2031..21651622931315.8971462-CDS-H-elongata_contig91799:2031..2165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91799 2032..2165 -
1691679786.4888072-CDS-H-elongata_contig91799:2031..21651691679786.4888072-CDS-H-elongata_contig91799:2031..2165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91799 2032..2165 -
1622931315.9112737-CDS-H-elongata_contig91799:2367..24461622931315.9112737-CDS-H-elongata_contig91799:2367..2446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91799 2368..2446 -
1691679786.504194-CDS-H-elongata_contig91799:2367..24461691679786.504194-CDS-H-elongata_contig91799:2367..2446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91799 2368..2446 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig91799.16635.1

>prot_H-elongata_contig91799.16635.1 ID=prot_H-elongata_contig91799.16635.1|Name=mRNA_H-elongata_contig91799.16635.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
QLLGTDKTPIDVSVLYPKQWTVTKTPGKQISIQDYKYTDRAFSLSTPLPS
GKRSLNDLPVSFYTDVLFDLNGPYGNFGKVEDFKVIQTKTAEKGKRTYVD
LKFAAPTQTVMQVS
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mRNA from alignment at H-elongata_contig91799:1049..2446-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig91799.16635.1 ID=mRNA_H-elongata_contig91799.16635.1|Name=mRNA_H-elongata_contig91799.16635.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1398bp|location=Sequence derived from alignment at H-elongata_contig91799:1049..2446- (Himanthalia elongata Himel1 dioecious)
CAGCTTCTTGGAACGGACAAAACTCCGATCGATGTGTCAGTTCTCTACCC
CAAGCAATGGACTGTCACCAAGACTCCGGGTAAGCCAGCGCACTCGGATC
GCTCCCTCCTCCTGGGGTGTGACGTAGCTCTATTCCTTTGGGTCTTGCGA
CAAAATCGCCCTAACCAGCCCCCCCCTATTCCCGTCCCCCACTAACCCCC
CCTCGTTGCTGCGAGAGTCTTTGGCTGGTTGTCAGCTAGGTGCAAACCAT
TGATTGCGATTTCCCCCCCCGCGTCGATCAGGGAAACAAATATCGATCCA
AGACTACAAGTACACCGACAGAGCCTTTTCGCTGTCCACACCCCTCCCGA
GCGGAAAAAGAAGCCTGAATGATCTCCCCGTTTCCTTCTACACCGACGTC
CTCTTCGACTTGAATGTAAGGAGAAACACGCCAGAAGAGTCGCCTTTTAC
CACGTTTTTGGGGGGGAGAGTGAAGGCGTTGTGAAGAATGAGGAAGGGGG
GGGAGAAGAGGGGGGCGAGGGACCGGACTCTACAACCTGAGCCACAGTCT
CCATTGGTGTGTTTTGCAGTGCCATACAACCGGAAAGCGTAGTAGCGCTT
TATGGTTTTGTCGGTGCGCATCGTAGGAAGCCGGCTTTAGGCCAACACAT
GCACCGCGAAACCTTCACGGACGGTATTGATGGGTCGCAGATATGTTGAC
CTTCATTCGCATCACTCTGGGCTTGAAATTCACCCCAACCGTAGCCGCTA
CCATGTGTCCCGCGATTCCTGCTCGCGTGACGTCAGGGACCGTACGGAAA
TTTCGGTAAGGTGGAAGACTTCAAGGTAATCCAAACGAAGACAGCCGAGA
AAGGGAAGCGCACGTACAGGCGAGCGCGAACGACCCGAAGCATTATGGCT
GGAGGAGTAGATATCACGATTTCAAGTACTGTAGTTCGTTCACAATGGCA
CGGCCGATCCGTCGCGCTTCGCATGTTCAACCCCTTGAAGGTGGGTGCTT
TGAGTGAGGGATACTTCGCGTCCCGGGTTCAAGCCTGCGCACTCTTACCA
TCGTATTGAATGCGTTCGAGGCTGTCTCTACGTGGTATCGTACAATCCCA
GGGAGGTCAAACACGGCGAGGTAGAATAGGGAAAATGAACCTTGGTGATG
CGTCGATCCAGAAAAGTGTTCTTTATAGTGCCCTGAAGGCCGTACGGGGA
GGGTGTTGGTGAAAACGGGACGATCGACTGCGGCCGCCGCTCTGCGATCA
CTCTACTTTGCGTCGGTGCCTATGATTGGAAGCTACCGGCCTCGTAGTTC
CATGATGGATTGGATTCTCGTATCATCCCGGCGCCCGTTTTATCAGGTAC
GTCGACCTCAAGTTCGCAGCGCCCACCCAAACCGTCATGCAGGTAAGC
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Coding sequence (CDS) from alignment at H-elongata_contig91799:1049..2446-

>mRNA_H-elongata_contig91799.16635.1 ID=mRNA_H-elongata_contig91799.16635.1|Name=mRNA_H-elongata_contig91799.16635.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig91799:1049..2446- (Himanthalia elongata Himel1 dioecious)
CAGCTTCTTGGAACGGACAAAACTCCGATCGATGTGTCAGTTCTCTACCC
CAAGCAATGGACTGTCACCAAGACTCCGGCAGCTTCTTGGAACGGACAAA
ACTCCGATCGATGTGTCAGTTCTCTACCCCAAGCAATGGACTGTCACCAA
GACTCCGGGGAAACAAATATCGATCCAAGACTACAAGTACACCGACAGAG
CCTTTTCGCTGTCCACACCCCTCCCGAGCGGAAAAAGAAGCCTGAATGAT
CTCCCCGTTTCCTTCTACACCGACGTCCTCTTCGACTTGAATGGAAACAA
ATATCGATCCAAGACTACAAGTACACCGACAGAGCCTTTTCGCTGTCCAC
ACCCCTCCCGAGCGGAAAAAGAAGCCTGAATGATCTCCCCGTTTCCTTCT
ACACCGACGTCCTCTTCGACTTGAATGGACCGTACGGAAATTTCGGTAAG
GTGGAAGACTTCAAGGTAATCCAAACGAAGACAGCCGAGAAAGGGAAGCG
CACGGACCGTACGGAAATTTCGGTAAGGTGGAAGACTTCAAGGTAATCCA
AACGAAGACAGCCGAGAAAGGGAAGCGCACGTACGTCGACCTCAAGTTCG
CAGCGCCCACCCAAACCGTCATGCAGGTAAGCGTACGTCGACCTCAAGTT
CGCAGCGCCCACCCAAACCGTCATGCAGGTAAGC
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