mRNA_H-elongata_contig91786.16634.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig91786.16634.1 vs. uniprot
Match: D8LLR0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLR0_ECTSI) HSP 1 Score: 220 bits (561), Expect = 5.630e-69 Identity = 106/139 (76.26%), Postives = 118/139 (84.89%), Query Frame = 1
Query: 1 GLDTGDLVLFDRPCFRMSGFFGTAICSTVKAVGGSPFDHIGVVVRQADGSNVLVEVSFSGVAVRPLCERIRKSSANQICVRRLEANRTEEMRAEARVFVSEVAHLPYKFGAEGFIQMAYAVFRFHPVKEPRRRVHAETV 417
GLDTGDLVLFDRPC +M GFFG AIC+ K VGG PFDHIGVVV+ G NV+VE SFSGVAVRPLCER+R+SSA+QICVRRL+A+RTEEMR EAR FVSEV+HLPYK G+EG +QM A FRFHP KE RRRVHAETV
Sbjct: 23 GLDTGDLVLFDRPCLKMGGFFGAAICAAAKVVGGVPFDHIGVVVKDEKGLNVMVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMREEARRFVSEVSHLPYKEGSEGLLQMVSAAFRFHPAKEQRRRVHAETV 161
BLAST of mRNA_H-elongata_contig91786.16634.1 vs. uniprot
Match: A0A6H5L9T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9T0_9PHAE) HSP 1 Score: 216 bits (551), Expect = 5.240e-64 Identity = 104/138 (75.36%), Postives = 116/138 (84.06%), Query Frame = 1
Query: 4 LDTGDLVLFDRPCFRMSGFFGTAICSTVKAVGGSPFDHIGVVVRQADGSNVLVEVSFSGVAVRPLCERIRKSSANQICVRRLEANRTEEMRAEARVFVSEVAHLPYKFGAEGFIQMAYAVFRFHPVKEPRRRVHAETV 417
LDTGDLV FDRPC +M GFFG AIC+ K VGG PFDHIGVVV+ G NV+VE SFSGVAVRPLCER+R+SSA+QICVRRL+A+RTEEMR EAR FVSEV+HLPYK G+EG +QM A FRFHP KE RRRVHAETV
Sbjct: 10 LDTGDLVFFDRPCLKMGGFFGAAICAAAKVVGGVPFDHIGVVVKDEKGLNVMVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMREEARRFVSEVSHLPYKEGSEGLLQMVSAAFRFHPAKEQRRRVHAETV 147
BLAST of mRNA_H-elongata_contig91786.16634.1 vs. uniprot
Match: A0A835ZEA6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEA6_9STRA) HSP 1 Score: 108 bits (270), Expect = 1.470e-27 Identity = 60/134 (44.78%), Postives = 81/134 (60.45%), Query Frame = 1
Query: 4 LDTGDLVLFDRPCFRMSGFFGTAICSTVKAVGGSPFDHIGVVVRQADGSNVLVEVSFSGVAVRPLCERIRKSSANQICVRRLEANRTEEMRAEARVFVSEVAHLPYKFGAEGFIQMAYAVFRFHPVKEPRRRVH 405
LDTGD+VLF RPC RM G G +C K V +P+DHIGVVV+ DG+N + E +FSGV L R+++SSA I VRRL R + MR AR +V+E+ PYK +++A + + P K RR +H
Sbjct: 1 LDTGDIVLFSRPCQRM-GVLGCILCLGTKTVHATPWDHIGVVVKDKDGTNRIWEAAFSGVKHYDLHARLQRSSAYMIAVRRLYTERNDAMRESARQYVAEIEQRPYKASYAQLVRVAVSQY---PAKRRRRDLH 130
BLAST of mRNA_H-elongata_contig91786.16634.1 vs. uniprot
Match: A0A7S1NCK3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NCK3_9EUGL) HSP 1 Score: 104 bits (260), Expect = 3.520e-26 Identity = 53/117 (45.30%), Postives = 73/117 (62.39%), Query Frame = 1
Query: 1 GLDTGDLVLFDRPCFRMSGFFGTAICSTVKAVGGSPFDHIGVVVRQADGSNVLVEVSFSGVAVRPLCERIRKSSANQICVRRLEANRTEEMRAEARVFVSEVAHLPYKFGAEGFIQM 351
G+D GDLVLF+R C +MS F G A+C + K S +DH+G+VVR DGS +++ F GV PL ER+R+S ++ IC RRL RT EMR + F +EV PYK F+++
Sbjct: 11 GIDAGDLVLFNRQCLKMSPF-GAAVCFSAKLYCASKWDHVGIVVRDPDGSLHILDAGFGGVRKYPLLERLRRSKSDDICFRRLAVPRTNEMRQQLIDFTTEVVQAPYKKDTLEFLRI 126
BLAST of mRNA_H-elongata_contig91786.16634.1 vs. uniprot
Match: A0A7J7IKN1_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IKN1_9RHOD) HSP 1 Score: 107 bits (266), Expect = 3.260e-24 Identity = 64/139 (46.04%), Postives = 84/139 (60.43%), Query Frame = 1
Query: 1 GLDTGDLVLFDRPCFRMSGFFGTAICSTVKAVGGSPFDHIGVVVRQADGSNVLVEVSFSGVAVRPLCERIRKSSANQICVRRLEANRTEEMRAEARVFVSEVAHLPYK--FGAEGFIQMAYAVFRFHPVK-EPRRRVHA 408
GLD GD+VLF+R C M+ G IC+ KA+ S +DH+G+VVR+ DGS L+E + SGV +RPL ERIR+S +N+I RRL RT+ R E F +V PYK FGA M +V HP + R R+HA
Sbjct: 89 GLDAGDIVLFNRRCLAMAPL-GALICAVAKAMSNSRWDHVGIVVRKEDGSLHLLEANLSGVTLRPLDERIRRSRSNEIAFRRLSIVRTDRFRRELEHFAEQVLETPYKNDFGA-----MLVSVI--HPADMQERERLHA 219
BLAST of mRNA_H-elongata_contig91786.16634.1 vs. uniprot
Match: M1VD17_CYAM1 (Similar to mitochondrial calcium-dependent solute carrier n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VD17_CYAM1) HSP 1 Score: 106 bits (264), Expect = 6.130e-24 Identity = 61/137 (44.53%), Postives = 80/137 (58.39%), Query Frame = 1
Query: 1 GLDTGDLVLFDRPCFRMSGFFGTAICSTVKAVGGSPFDHIGVVVRQADGSNVLVEVSFSGVAVRPLCERIRKSSANQICVRRLEANRTEEMRAEARVFVSEVAHLPYKFGAEGFIQMAYAVFRFHPVK-EPRRRVHA 408
GLD GD+VLF+R C M+ G IC+ KA+ S +DH+G+VVR+ DGS L+E + SGV +RPL ERIR+S +N+I RRL RTE R E F +V PYK + V HP + R R+HA
Sbjct: 91 GLDAGDIVLFNRRCLAMAPL-GALICAVAKAMSNSRWDHVGIVVRKEDGSLHLLEANLSGVTLRPLDERIRRSRSNEIAFRRLSIIRTERFRTELLHFAEQVLETPYKNDLGAML-----VSVIHPADMQERERLHA 221
BLAST of mRNA_H-elongata_contig91786.16634.1 vs. uniprot
Match: A0A7S4CKQ5_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CKQ5_9EUGL) HSP 1 Score: 102 bits (253), Expect = 1.770e-22 Identity = 52/117 (44.44%), Postives = 72/117 (61.54%), Query Frame = 1
Query: 1 GLDTGDLVLFDRPCFRMSGFFGTAICSTVKAVGGSPFDHIGVVVRQADGSNVLVEVSFSGVAVRPLCERIRKSSANQICVRRLEANRTEEMRAEARVFVSEVAHLPYKFGAEGFIQM 351
GLD GD+VLF+R C S F G AIC T KA S +DHIG++V+ DGS L++ F GV PL +R+ +S ++ +C+RRL RT EMR + F EV PYK A+ +++
Sbjct: 35 GLDAGDIVLFNRRCLTFSPF-GAAICFTAKAYARSRWDHIGIIVKDPDGSLHLLDAGFGGVRKFPLRDRLERSKSDDLCIRRLAMPRTNEMRQKLSEFSDEVVQAPYKKAAQELLRV 150
BLAST of mRNA_H-elongata_contig91786.16634.1 vs. uniprot
Match: M2Y5W0_GALSU (Mitochondrial carrier n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y5W0_GALSU) HSP 1 Score: 100 bits (248), Expect = 8.680e-22 Identity = 56/137 (40.88%), Postives = 82/137 (59.85%), Query Frame = 1
Query: 1 GLDTGDLVLFDRPCFRMSGFFGTAICSTVKAVGGSPFDHIGVVVRQADGSNVLVEVSFSGVAVRPLCERIRKSSANQICVRRLEANRTEEMRAEARVFVSEVAHLPYKFGAEGFIQMAYAVFRFHPV-KEPRRRVHA 408
GLD+GDLVLF+R C MS + G IC K S +DH+G++VR+ DG+ L+E + SGV +RPL ER+++S +++I +RRL RTE R + FV+ +LPY+ + PV K+ R R+HA
Sbjct: 14 GLDSGDLVLFNRRCLSMSPY-GALICGLSKLFSKSRWDHVGLIVRKEDGNLFLLEANLSGVKLRPLEERLKRSHSHEIAIRRLSIVRTEVFRGKLLDFVNRTINLPYETSTSSLLSTI-----IDPVDKQERERLHA 144
BLAST of mRNA_H-elongata_contig91786.16634.1 vs. uniprot
Match: F0WJW3_9STRA (Mitochondrial Carrier (MC) Family putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJW3_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 1.050e-20 Identity = 55/126 (43.65%), Postives = 78/126 (61.90%), Query Frame = 1
Query: 4 LDTGDLVLFDRPCFRMSGFFGTAICSTVKAVGGSPFDHIGVVVR--QADGS------NVLVEVSFSGVAVRPLCERIRKSSANQICVRRLEANRTEEMRAEARVFVSEVAHLPYKFGAEGFIQMAY 357
LDTGD+VLF RPC +M +G IC+ K G + +DHIGV+VR ++GS + L+E + SGV +RPL ERI +S A++I +RRL+ +RT E + EA+ FV V Y+ E F+ Y
Sbjct: 27 LDTGDIVLFSRPCLQME-LYGGIICACAKLFGNTDWDHIGVIVRVPTSEGSAKGISEHYLLEATLSGVKLRPLEERILRSRASEIAIRRLQVHRTPEFQREAQQFVQLVQDSKYEDRLERFVNAGY 151
BLAST of mRNA_H-elongata_contig91786.16634.1 vs. uniprot
Match: A0A024GPF7_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GPF7_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 6.750e-20 Identity = 54/126 (42.86%), Postives = 76/126 (60.32%), Query Frame = 1
Query: 4 LDTGDLVLFDRPCFRMSGFFGTAICSTVKAVGGSPFDHIGVVVRQADGS----NV----LVEVSFSGVAVRPLCERIRKSSANQICVRRLEANRTEEMRAEARVFVSEVAHLPYKFGAEGFIQMAY 357
+DTGD+VLF+RPCF+M +G IC+ K G + +DHIGV+VR + NV L+E + SGV +RPL +RI +S AN+I +RRL+ +RT E + A FV V Y+ E F+ Y
Sbjct: 27 IDTGDIVLFNRPCFQMD-LYGGIICTCAKLFGNTDWDHIGVIVRVPASAESEKNVSELHLLEATLSGVKLRPLEDRILRSRANEISIRRLQVHRTSEFQKAAHQFVQLVQDSKYEDRLERFVNAGY 151 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig91786.16634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig91786.16634.1 >prot_H-elongata_contig91786.16634.1 ID=prot_H-elongata_contig91786.16634.1|Name=mRNA_H-elongata_contig91786.16634.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp GLDTGDLVLFDRPCFRMSGFFGTAICSTVKAVGGSPFDHIGVVVRQADGSback to top mRNA from alignment at H-elongata_contig91786:186..1688+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig91786.16634.1 ID=mRNA_H-elongata_contig91786.16634.1|Name=mRNA_H-elongata_contig91786.16634.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1503bp|location=Sequence derived from alignment at H-elongata_contig91786:186..1688+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig91786:186..1688+ >mRNA_H-elongata_contig91786.16634.1 ID=mRNA_H-elongata_contig91786.16634.1|Name=mRNA_H-elongata_contig91786.16634.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig91786:186..1688+ (Himanthalia elongata Himel1 dioecious)back to top |