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Homology
BLAST of mRNA_H-elongata_contig12174.1663.1 vs. uniprot
Match: D8LK41_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK41_ECTSI) HSP 1 Score: 373 bits (958), Expect = 2.620e-119 Identity = 224/363 (61.71%), Postives = 244/363 (67.22%), Query Frame = 2
Query: 737 VKLAPFACYFFST----VHYVIALAFSGSVLPGYACHLVALWLSLVAFSLVIVLWSNTLNPPRAALRSPEPGA------------EDARGTCCGKARISAAASFVFAIDAVVAISTVAVLYTGSVPAYSRPYLILMVTHRQGVIVDDGLSACSVTLFLLASWLVMYGIRLQRRVMGHPRWEPLDRRQRLKILCRINGVLVVCAACFLLRVAVLSSALFVRSRHRAEEMNRLLFEFLARWVSGLIPGVALLHIMCKTKKPADDRPPTDRIRPNADNESEPSREPLLPRRGGTSSKGGMIGMSANTRGAS-----SSNMREGDGGSGGAT----------------DSFVYHVVRSQQDRTVTTI 1714
+KLA C S VHY I LAF GSVL GYACHLV LWLSLV+FSLVIVLWSNTL+PP E A CCGK RIS AA FV AIDA+VA++TV VL+TGSVPAYSRPYLILMVTH SVTLFLLASWLV+YGIRLQRRVMGHPRWEPLDRRQRLKILCRINGVLVVCAACFL+RVAVLSSALFVRSRHRAE+MNRLLFE LARWVSGLIPGVALLHIMCKTKKP +DRPP D++R + NE +P EPLLP G GG + M+ S SSN R G DSF Y +VRSQ++RT TTI
Sbjct: 42 IKLAFHVCINTSALLEIVHYAIELAFRGSVLSGYACHLVGLWLSLVSFSLVIVLWSNTLHPPXXXXXXXXXXXXXXXXXXXXXXXEPAGWRCCGKTRISIAAKFVCAIDAIVALATVVVLWTGSVPAYSRPYLILMVTH-------------SVTLFLLASWLVLYGIRLQRRVMGHPRWEPLDRRQRLKILCRINGVLVVCAACFLVRVAVLSSALFVRSRHRAEDMNRLLFEVLARWVSGLIPGVALLHIMCKTKKPGEDRPPPDQMRLSVVNEDQPLNEPLLPTHHGG---GGYVSMAKKKPNGSAGRGTSSNSRSGXXXXXXXXXXXXXXXXXXXXXXXXDSFAYQIVRSQRERTETTI 388
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal anchor |
| Exons | 7 |
| Model size | 2307 |
| Cds size | 624 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929716.6262403-UTR-H-elongata_contig12174:756..1346 | 1622929716.6262403-UTR-H-elongata_contig12174:756..1346 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig12174 757..1346 - |
| 1691679130.221416-UTR-H-elongata_contig12174:756..1346 | 1691679130.221416-UTR-H-elongata_contig12174:756..1346 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig12174 757..1346 - |
| 1622929716.7170105-UTR-H-elongata_contig12174:4359..4474 | 1622929716.7170105-UTR-H-elongata_contig12174:4359..4474 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig12174 4360..4474 - |
| 1691679130.2841718-UTR-H-elongata_contig12174:4359..4474 | 1691679130.2841718-UTR-H-elongata_contig12174:4359..4474 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig12174 4360..4474 - |
| 1622929716.7273526-UTR-H-elongata_contig12174:5018..5084 | 1622929716.7273526-UTR-H-elongata_contig12174:5018..5084 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig12174 5019..5084 - |
| 1691679130.292023-UTR-H-elongata_contig12174:5018..5084 | 1691679130.292023-UTR-H-elongata_contig12174:5018..5084 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig12174 5019..5084 - |
| 1622929716.737627-UTR-H-elongata_contig12174:5478..6390 | 1622929716.737627-UTR-H-elongata_contig12174:5478..6390 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig12174 5479..6390 - |
| 1691679130.2994475-UTR-H-elongata_contig12174:5478..6390 | 1691679130.2994475-UTR-H-elongata_contig12174:5478..6390 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig12174 5479..6390 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929716.6390736-CDS-H-elongata_contig12174:1346..1566 | 1622929716.6390736-CDS-H-elongata_contig12174:1346..1566 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12174 1347..1566 - |
| 1691679130.2297819-CDS-H-elongata_contig12174:1346..1566 | 1691679130.2297819-CDS-H-elongata_contig12174:1346..1566 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12174 1347..1566 - |
| 1622929716.6517737-CDS-H-elongata_contig12174:2093..2231 | 1622929716.6517737-CDS-H-elongata_contig12174:2093..2231 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12174 2094..2231 - |
| 1691679130.2466404-CDS-H-elongata_contig12174:2093..2231 | 1691679130.2466404-CDS-H-elongata_contig12174:2093..2231 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12174 2094..2231 - |
| 1622929716.6722834-CDS-H-elongata_contig12174:2665..2800 | 1622929716.6722834-CDS-H-elongata_contig12174:2665..2800 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12174 2666..2800 - |
| 1691679130.2606606-CDS-H-elongata_contig12174:2665..2800 | 1691679130.2606606-CDS-H-elongata_contig12174:2665..2800 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12174 2666..2800 - |
| 1622929716.6855507-CDS-H-elongata_contig12174:3801..3879 | 1622929716.6855507-CDS-H-elongata_contig12174:3801..3879 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12174 3802..3879 - |
| 1691679130.2699914-CDS-H-elongata_contig12174:3801..3879 | 1691679130.2699914-CDS-H-elongata_contig12174:3801..3879 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12174 3802..3879 - |
| 1622929716.70311-CDS-H-elongata_contig12174:4306..4359 | 1622929716.70311-CDS-H-elongata_contig12174:4306..4359 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12174 4307..4359 - |
| 1691679130.2770708-CDS-H-elongata_contig12174:4306..4359 | 1691679130.2770708-CDS-H-elongata_contig12174:4306..4359 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig12174 4307..4359 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12174.1663.1 >prot_H-elongata_contig12174.1663.1 ID=prot_H-elongata_contig12174.1663.1|Name=mRNA_H-elongata_contig12174.1663.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=208bp
MVTHRQGVIVDDGLSACSVTLFLLASWLVMYGIRLQRRVMGHPRWEPLDR RQRLKILCRINGVLVVCAACFLLRVAVLSSALFVRSRHRAEEMNRLLFEF LARWVSGLIPGVALLHIMCKTKKPADDRPPTDRIRPNADNESEPSREPLL PRRGGTSSKGGMIGMSANTRGASSSNMREGDGGSGGATDSFVYHVVRSQQ DRTVTTI* back to topmRNA from alignment at H-elongata_contig12174:757..6390- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig12174.1663.1 ID=mRNA_H-elongata_contig12174.1663.1|Name=mRNA_H-elongata_contig12174.1663.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5634bp|location=Sequence derived from alignment at H-elongata_contig12174:757..6390- (Himanthalia elongata Himel1 dioecious) GAGCTGTTGATCGCAGAGAGCGCTTCCTTTCCGAAACTGTATTGAGGTTT
CTGTCTTAGTGGGTGTGGAGGAGTGGAGCTCGACAAGGTCAGGCCTGCTG
GCGTTAAACCAATCAAATATTCTCACCCCCAGCGCCTACGACTATAGAGA
TACTATAGTGTAAAATACCCCGCTATTAAGAGAGCTCACGTTTTTTTCGT
GAATTGAAGATCTCGTGTCGTTATAACGAATAATCACATATGACGATTTT
GTGCTTAAATGTAGTTCTTAAATGTATGATAGTAATGTCCACATTCGAAC
CTGACGATAGTTGGTGGGTGCCCTGGTTTGCACCTCTCATGGTGCGAAGA
AGGCGTGGATGTTCGGAGGGTTTTAATGAGTTCATATGTTTTTTTAATAA
AAACACCACAACCGAACAACAACCGAAATCCGCCTAATTTTGTTATAAAT
GGGGGTGGGGGAGGGGGGGGGGGACTCTGTCGGGATAACGACCGTTAGTC
CCCCCTCCACCTCAGTATACTGCACGAGTGTATGAGGACAAAAACATGTG
ATTATGAGATTAAATTGAAACACTTAACCCGATGTTGCAGGAATAAGTCA
CCTAGCATTACATTTCTGATGTACTCGACAAACTGTAGTGGACACGACAC
TACCTCTAACATTCCATCGCATCGCATGGAGATACATAACACTTGATTGC
CATAACCTCCTCGATCTGCCCGCCGCCTGCCGTTCCGTGAAATTGGCGCC
CTTCGCCTGCTACTTTTTCTCAACAGTTCACTACGTAATCGCGCTAGCCT
TCAGCGGGTCCGTCCTTCCTGGCTACGCCTGCCATCTCGTCGCTCTATGG
CTCAGCCTGGTCGCGTTCAGCCTAGTGATCGTTCTTTGGTCAAACACGCT
CAACCCTCCCAGGTCTTCGCAAACAGCAGTCGGACATTCGGATCCACCCG
TAAAGCTATTAATAGCTATTGTAGTTATACTGTACTAGTAATACTTAAGA
AATGTATCCAGCCCCCTGTTGAAACTCAAAACGGGGGCTACCAAACTGGG
TAGAGTACGGAAGGCGATGCTTCACTCATCAAGGGCCAAACACACGCACA
CTCTTTCACACGTCGATGCTGCGGCGGAGGGCGGTCGCTGTCCTCTACCA
TTTCGTGGGGGCAGGATACCTTTATACTGTGAAAAGTATACCCTCAAGGT
AGGGGAAAGAGAGATAGAGAGGACGAAGCGAAGAGCAATTTTGTGTTTTT
ACACTTCAGCCTTTTCTCATGACCGCAATACTGTTTTCTCCACCCGTCGC
CAATAGGGCTGCTCTTCGATCCCCGGAGCCCGGCGCGGAAGACGCTCGGG
GCACATGCTGCGGCAAGGCAAGGTGTGAAACACTCGTTTGGACATCTAGC
CTCGATAGTTCTCTACTATTAAATAGTTTCGTACTGTACGTGTTTTCGTT
ATCAAGCATGAGCGCACCGACCGATTTGTTTTTTATTTGCCGTTGATGAA
GAAGCTGCGCGCTCACGGCTGATGAGCGCGCTAACTTCTCCTGAGTTGAC
GTGTTTTGTTCGAGAAATCGTAGAGGCTGGAGTTGAAAATGGGCGACAGG
AAGATCACGCAGAGATGTGTTTGGCAGATGATTTCGATTCCTTTTACGGT
AGATTTCTGGTAGACTAAAGCTGTTCGTCGAAGGCATATTCGTTGATGAT
GAGGTGGCTTTAGAAGAGGTGGGGGAGAGGGGGTCACGTCCGTTGAAAAT
GGAGCTGTTCGCACCACTTTCAAACTACTCGAGACAGCCGCGGATCTCCT
CGGCACGTTCAGCAATACTACGGGTAGTACTAAGGGTAGTGACTGCACTT
GTTCCGACGGTGTGACTGATTTCCCGCATCGTTCCTCGTCTCCGGCTATG
TCTTCCGCGTGTGAAGGATATCTGCTGCAGCCTCGTTCGTGTTTGCAATC
GACGCCGTAGTGGCTATCAGCACGGTAGCGGTGCTGTACACCGGGAGCGT
TCCTGCCTACTCCCGACCGTATCTGATCCTCATGGTCACTCACAGGCAAG
GCGTTATTGTTGACGATGGTTTATCTGCTTGCTCGTGTTTGCACGCGATA
CATTTTTGGTGTGCACGGGGTTCTTGCCGCGCTTAGCCATCCTTGCAGCA
GCTACATCAGTTCGGGGGAAAACACCAGGCTTACCGTTGGCCGCACCATC
CCGGTCGGCTATCTTTGACTGCACCATTACACCTGGAAACGCACTACATC
ATTGTATTTTGACATGCTAGGGCGTAGGGTTAGTTTAAGACATGACTTCG
TAACGCGCATTAGTTTATGAATTAACGTTATTGGCAGCATTAGCTCGGCG
TTGCACGTGAGCAAATGCGTTACCCCTCCGTCTTCACTTCACCGAACAAA
CCAAAAACGAGGAAGGGATTAGGAAACTGCTCGAGACGCCACGCCGCGCC
TGACCGTACCGTCTTCGTCCTCCATGTCATTCGAAAATAAAATCGTTCGT
CTCGAAATCAGCGTCACCCTGTTCCTGCTGGCTTCGTGGCTGGTCATGTA
CGGAATACGTCTGCAGAGGCGTGTCATGGGTCACCCCAGGTAAGCGGGCG
TCGGAGAAGTGATGCCTGCGCCCTGGCCTCTAAAACGCTAGAGCTATCCC
CCCGACAGAGACGATTTACTCGTTGCTAGCACTGCACTATAGTACACTAT
ATAGTGCAATAAACTATACTATAAAAGAGTATGGGTTACCTGAAAAGGCA
GCACCCGTTACTCAAGCTACCTTAAGGAGTACTAGCCCAGTACCGGCGGA
CTCTCGGTGGAAAACGCCATCGGCATACAATTGCGCGGCCTGATAAACTC
GGGATTGACCGACGGTGGTTGACGGTAGAGATGGACGTCGTCTCGGAAAG
TATGGAGAACGAGAGCATCCCAGGACTACGCGCCAAATTCAGCCTGGGTT
GGGAGAAAACGCTGGACGGGACGGCCGAACCTGTCTCGCGTGACTAAATT
CTCAGGCGCGAACGGGGAAAGGGAAAATCAATTTTCCGTGTTCAGCTGAC
CATATGCAGAATTGGCAACCATATTCGGTGTATCCATACTAAAGACTATA
TGTTATGACAACACCCAAACACAGTCTTCTACACCTCAGTACCCATTATA
GTTCACTACACTACAGTCTACGATAAGTACAAGCTCCGTGCACCCAAGAT
TATAGCTGACGGTGGAAAATGTTTCCGGGAGAGAGGGTAAATATGTGCTC
CTGTAGTGCTACATCGCCCCATATACATGCGCCTGGCGTTAGCTGAAGTG
AAACGGGGATGTGGCCTGCAGGGGATCGGTCATGCTGATAGATGCCTCGT
GTTGCACGCCACGCATCCTTCGAAAGACGAACGTGTATCCCGCCCTGTCG
CGATTGGTCGACACGATCTTAATTACTAGATGGTTTTCGTTTAATGAAAA
GCGTGCATGATTTCCGGAAATAACGTTTCCCTCAACCCCCCACCCCCCCC
CCCCAAGCCAAGGAAGCGAACTGCACTGCTGTTCGTTGATTTGACGCCCC
ACGCTGTTGCCGCCTTTGTTATTTCGCTTTCCTCCTAAAGGTGGGAACCG
CTCGACCGTCGGCAGAGGCTCAAGATACTCTGTCGAATCAACGGAGTTCT
GGTAGTGTGCGCGGCGTGCTTCCTTCTCCGCGTGGCCGTGCTATCCTCAG
CGCTCTTCGTGCGTTCGAGGCACAGGTGAGGTGTGAGTTGATGGCTGCGA
TGCCTCCCGGGCTGAAAGCAAGCGAACAGCACAGCACAGTCCACCGCTTT
CGCCGACCCCAACGTATTAGCCGGTGTTGAATTGTCTTGACGCAGAGGAG
AAGAATGGCCAACGGACCCGGGGCGTGAGATTACCACGGGGACTGTTGGG
ATGAGCTTTAAACATAGGCCTTGCTTCTTCTGGGAAGACTCCGTTTAACT
TTAAAAGTAAACTATGGTATAATGATGCAAGTTTAGTAAGTAAGACAGAT
GTCGCGCGGGTAACTATATCTTCTGGTCGCTCGAATCGAGAACGAGAACG
AACGGTCTACTCTCGGCGCTGCGATGACTGATGCACTAGACTGATGTACT
ACCGTGTACCTGATCTTAATGTTCCACCTGTCCTGGCCGTCTGGTGGTAC
CGTACTCAGGGCGGAAGAAATGAACCGCCTCCTATTTGAATTCTTGGCGA
GATGGGTGTCCGGGCTTATTCCCGGCGTAGCTCTCCTCCACATCATGTGC
AAAACCAAGAAGCCTGCCGATGATCGTCCACCGACGGATCGAATACGGTG
ACCACACGGGAGAAATGGTCGGGTCTAAGACAGGGGGGGGTGGGGGGGGA
GGGACAAAAAAGTTGAGGTCCGAAAACTTTGCGGTTAAAAAATAAAGGTC
CATCGTAAGAGGTAGACTGAGGGAGACTCAAGTCTTCACCTTTTAATATT
TTTCGATACCCCCGTCGTAAGTTTGGCGTGAACTCTGCATGCCTCCTTAT
GAAGTTGGTGCTATATATATAATGATAATAAAGAGTCCCCCTCCCGACCC
TGCAGTATCATCACCATTATCATAATCTTTATAAAGGTTTTGCTATAGAA
TAGCTCGAGACGGGAACGCGATAGTTAATATTTTTTCATGAAAGGGTGCT
GGAGTCTTCGCGCGTGTGTGTCTCTCTCCTGCATATGCTCAATTTCAAGA
ATTCTCACGCATCTACTTGCCCGTGATTCTCGACCTCTCGCTGGCGTTGC
GACGATGCATTCTTATCTGTCGATTGTGGGCATTCGTTCGGTGTTCCGTG
TTCGTTGATGTTTTGTTGTCCCAGACCGAACGCTGATAACGAATCGGAGC
CATCGAGGGAACCCCTGTTGCCGAGACGAGGAGGTACAAGCAGCAAGGGG
GGCATGATCGGCATGAGCGCTAACACACGGGGTGCTAGTAGCAGTAACAT
GAGGGAGGGTGACGGGGGTTCGGGGGGAGCGACTGACAGTTTTGTGTACC
ACGTGGTGAGGTCACAGCAGGATAGAACTGTAACCACAATATGATGCTCA
TTGCTCTGGCCGAATCGTGGTCTTCATGGTGCTGCACGAAGAGTTCTCTG
TATGGCAGCCTCTGCATGACGGCCTGATTGCAACTACGGTAAGGAGAGGC
ACAGGAAAACATAATGACGAAATGTGAACGGTTTGAGCAGTGTTGCTCAT
CAGAACGGATGCTTCTCATCCATAATGTAGTAGTCGGTGCACTGTAGTTT
CCGAGTATTATGCACCATTGCCGTTTCCTTTTGCATGGAGAAGAAGTACA
GTATACATTTTCCTTCCGGATGCTGTTTTTGAAATCAGCTTATTATGTGA
GAAATTAAATCAATTAAATCAATCAAATCCAATCAATCGAGGGACTGCAG
TGTAGAGAAACCCTAGATGTGGTCGGAATGCCCGTGAACGCTTCGGAGAG
GAAACACCTTTTTTCTTATGATTATTTTTGTCGTCGCTCGAATAGGCTAA
TATACACAGTATTACTCAAGTATAATATTGTCGTCCGAACCACATGCATG
CCTGTATTGTACGACATTCTAATAATGATATGATAATAGTGCGGAGAGGA
GATATGATAATGAGTTCGACAAGTACCAAGATGC back to topCoding sequence (CDS) from alignment at H-elongata_contig12174:757..6390- >mRNA_H-elongata_contig12174.1663.1 ID=mRNA_H-elongata_contig12174.1663.1|Name=mRNA_H-elongata_contig12174.1663.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1248bp|location=Sequence derived from alignment at H-elongata_contig12174:757..6390- (Himanthalia elongata Himel1 dioecious) ATGGTCACTCACAGGCAAGGCGTTATTGTTGACGATGGTTTATCTGCTTG CTCATGGTCACTCACAGGCAAGGCGTTATTGTTGACGATGGTTTATCTGC TTGCTCCGTCACCCTGTTCCTGCTGGCTTCGTGGCTGGTCATGTACGGAA TACGTCTGCAGAGGCGTGTCATGGGTCACCCCAGCGTCACCCTGTTCCTG CTGGCTTCGTGGCTGGTCATGTACGGAATACGTCTGCAGAGGCGTGTCAT GGGTCACCCCAGGTGGGAACCGCTCGACCGTCGGCAGAGGCTCAAGATAC TCTGTCGAATCAACGGAGTTCTGGTAGTGTGCGCGGCGTGCTTCCTTCTC CGCGTGGCCGTGCTATCCTCAGCGCTCTTCGTGCGTTCGAGGCACAGGTG GGAACCGCTCGACCGTCGGCAGAGGCTCAAGATACTCTGTCGAATCAACG GAGTTCTGGTAGTGTGCGCGGCGTGCTTCCTTCTCCGCGTGGCCGTGCTA TCCTCAGCGCTCTTCGTGCGTTCGAGGCACAGGGCGGAAGAAATGAACCG CCTCCTATTTGAATTCTTGGCGAGATGGGTGTCCGGGCTTATTCCCGGCG TAGCTCTCCTCCACATCATGTGCAAAACCAAGAAGCCTGCCGATGATCGT CCACCGACGGATCGAATACGGGCGGAAGAAATGAACCGCCTCCTATTTGA ATTCTTGGCGAGATGGGTGTCCGGGCTTATTCCCGGCGTAGCTCTCCTCC ACATCATGTGCAAAACCAAGAAGCCTGCCGATGATCGTCCACCGACGGAT CGAATACGACCGAACGCTGATAACGAATCGGAGCCATCGAGGGAACCCCT GTTGCCGAGACGAGGAGGTACAAGCAGCAAGGGGGGCATGATCGGCATGA GCGCTAACACACGGGGTGCTAGTAGCAGTAACATGAGGGAGGGTGACGGG GGTTCGGGGGGAGCGACTGACAGTTTTGTGTACCACGTGGTGAGGTCACA GCAGGATAGAACTGTAACCACAATATGAACCGAACGCTGATAACGAATCG GAGCCATCGAGGGAACCCCTGTTGCCGAGACGAGGAGGTACAAGCAGCAA GGGGGGCATGATCGGCATGAGCGCTAACACACGGGGTGCTAGTAGCAGTA ACATGAGGGAGGGTGACGGGGGTTCGGGGGGAGCGACTGACAGTTTTGTG TACCACGTGGTGAGGTCACAGCAGGATAGAACTGTAACCACAATATGA back to top
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