mRNA_H-elongata_contig91679.16626.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig91679.16626.1
Unique NamemRNA_H-elongata_contig91679.16626.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig91679.16626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig91679contigH-elongata_contig91679:380..887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size350
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig91679.16626.1prot_H-elongata_contig91679.16626.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig91679 411..874 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931314.8769956-UTR-H-elongata_contig91679:379..4101622931314.8769956-UTR-H-elongata_contig91679:379..410Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig91679 380..410 +
1691679785.8670619-UTR-H-elongata_contig91679:379..4101691679785.8670619-UTR-H-elongata_contig91679:379..410Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig91679 380..410 +
1622931314.9194183-UTR-H-elongata_contig91679:874..8871622931314.9194183-UTR-H-elongata_contig91679:874..887Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig91679 875..887 +
1691679785.905345-UTR-H-elongata_contig91679:874..8871691679785.905345-UTR-H-elongata_contig91679:874..887Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig91679 875..887 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931314.890479-CDS-H-elongata_contig91679:410..4301622931314.890479-CDS-H-elongata_contig91679:410..430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91679 411..430 +
1691679785.8779206-CDS-H-elongata_contig91679:410..4301691679785.8779206-CDS-H-elongata_contig91679:410..430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91679 411..430 +
1622931314.9045932-CDS-H-elongata_contig91679:588..8741622931314.9045932-CDS-H-elongata_contig91679:588..874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91679 589..874 +
1691679785.8935866-CDS-H-elongata_contig91679:588..8741691679785.8935866-CDS-H-elongata_contig91679:588..874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91679 589..874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig91679.16626.1

>prot_H-elongata_contig91679.16626.1 ID=prot_H-elongata_contig91679.16626.1|Name=mRNA_H-elongata_contig91679.16626.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MGPTIVRGVDSMEEEGGHNHSAEEREASRTTGVPGITVGVWTRFRAAFVG
DSFGQRVTSIHVNKCRRDRNNTLQMYVYIFMKLHITAQSGPVVLVIIHHS
H*
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mRNA from alignment at H-elongata_contig91679:380..887+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig91679.16626.1 ID=mRNA_H-elongata_contig91679.16626.1|Name=mRNA_H-elongata_contig91679.16626.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=508bp|location=Sequence derived from alignment at H-elongata_contig91679:380..887+ (Himanthalia elongata Himel1 dioecious)
CTTCTTCTTAGCGCCGCGAGGGGTGCATTCCATGGGACCAACTATCGTCA
GGTTCGAATGTGTACATTACTACGCTTGAGAATAAAGCACATGGTTCCTA
CACCCACAGCGCAGTCGATCGAAATTAACAATTAACATCCATTGTTATAG
TACTGTATTAGTAGTTCACGACTGACGACCACTGTACTGCACTGTACTTT
GCTCTCTAGAGGGGTTGATTCCATGGAGGAAGAAGGAGGACACAACCATT
CCGCAGAGGAACGCGAGGCGTCAAGGACCACGGGGGTACCGGGGATCACG
GTCGGCGTCTGGACGCGGTTCAGGGCGGCGTTCGTTGGGGATAGTTTCGG
GCAACGAGTGACTTCCATACATGTAAATAAGTGCCGCAGAGACAGAAATA
ATACCCTGCAGATGTATGTATATATATTTATGAAATTGCACATAACCGCG
CAATCCGGCCCTGTCGTCCTAGTCATTATACACCACTCGCATTGATCCTC
CGAGAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig91679:380..887+

>mRNA_H-elongata_contig91679.16626.1 ID=mRNA_H-elongata_contig91679.16626.1|Name=mRNA_H-elongata_contig91679.16626.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig91679:380..887+ (Himanthalia elongata Himel1 dioecious)
ATGGGACCAACTATCGTCAGATGGGACCAACTATCGTCAGAGGGGTTGAT
TCCATGGAGGAAGAAGGAGGACACAACCATTCCGCAGAGGAACGCGAGGC
GTCAAGGACCACGGGGGTACCGGGGATCACGGTCGGCGTCTGGACGCGGT
TCAGGGCGGCGTTCGTTGGGGATAGTTTCGGGCAACGAGTGACTTCCATA
CATGTAAATAAGTGCCGCAGAGACAGAAATAATACCCTGCAGATGTATGT
ATATATATTTATGAAATTGCACATAACCGCGCAATCCGGCCCTGTCGTCC
TAGTCATTATACACCACTCGCATTGAAGGGGTTGATTCCATGGAGGAAGA
AGGAGGACACAACCATTCCGCAGAGGAACGCGAGGCGTCAAGGACCACGG
GGGTACCGGGGATCACGGTCGGCGTCTGGACGCGGTTCAGGGCGGCGTTC
GTTGGGGATAGTTTCGGGCAACGAGTGACTTCCATACATGTAAATAAGTG
CCGCAGAGACAGAAATAATACCCTGCAGATGTATGTATATATATTTATGA
AATTGCACATAACCGCGCAATCCGGCCCTGTCGTCCTAGTCATTATACAC
CACTCGCATTGA
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