mRNA_H-elongata_contig91659.16625.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig91659.16625.1
Unique NamemRNA_H-elongata_contig91659.16625.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig91659.16625.1 vs. uniprot
Match: A0A6H5JKH3_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH3_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.370e-22
Identity = 51/121 (42.15%), Postives = 66/121 (54.55%), Query Frame = 1 
Query:    4 FGLKVSEKKTVTMHMRPPTMKAEAVAVEAVGQRYSQVITFVYLGSTISSVEDVGPEIKRRTGYAWSCSLKYSRAVYDNPYIAVADKVRFLKTEVLEVLLYGCMTWTLSPNDFDKLRKAHRE 366
            FGL VSE KT  M M P  ++     V A GQ Y Q   FVYLG TIS+      EI  R+  AW C  + S ++YD        K+R L+ EV+E LLYGC +W+L+   + KL   HR+
Sbjct:   31 FGLMVSEPKTEIMCMLPKGIEERQFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQ 151
[Close]
BLAST of mRNA_H-elongata_contig91659.16625.1 vs. uniprot
Match: A0A6H5L020_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L020_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.750e-21
Identity = 53/121 (43.80%), Postives = 67/121 (55.37%), Query Frame = 1 
Query:    4 FGLKVSEKKTVTMHMRPPTMKAEAVAVEAVGQRYSQVITFVYLGSTISSVEDVGPEIKRRTGYAWSCSLKYSRAVYDNPYIAVADKVRFLKTEVLEVLLYGCMTWTLSPNDFDKLRKAHRE 366
            FGL VSE KT  M M P  ++     V A GQ Y Q   FVYLG TIS+   V  EI  RT  AW C  + S ++YD        K+R L+ EV+E LLYGC +W+L+   + KL   HR+
Sbjct:  519 FGLMVSEPKTEIMCMLPKGIEEHPFTVSAAGQTYKQTDRFVYLGRTISADGKVDREITSRTCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQ 639
[Close]
BLAST of mRNA_H-elongata_contig91659.16625.1 vs. uniprot
Match: A0A6H5KBT2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT2_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.890e-21
Identity = 52/127 (40.94%), Postives = 70/127 (55.12%), Query Frame = 1 
Query:    4 FGLKVSEKKTVTMHMR----PPTMKAEA----VAVEAVGQRYSQVITFVYLGSTISSVEDVGPEIKRRTGYAWSCSLKYSRAVYDNPYIAVADKVRFLKTEVLEVLLYGCMTWTLSPNDFDKLRKAH 360
            FGL VSEKKT T+ MR    P T    A    + +EA GQ+Y+Q   F YLG  ++   D+  EI  R+  AW+C  +Y R ++D P      K+R L+ E +E LLYGCMTW+     +  LR  H
Sbjct:  310 FGLTVSEKKTETLLMRAKDKPTTTSQPAPPPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLRAEAMEALLYGCMTWSPLSGHYQTLRSIH 436
[Close]
BLAST of mRNA_H-elongata_contig91659.16625.1 vs. uniprot
Match: A0A6H5L5J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J5_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 3.130e-21
Identity = 51/121 (42.15%), Postives = 66/121 (54.55%), Query Frame = 1 
Query:    4 FGLKVSEKKTVTMHMRPPTMKAEAVAVEAVGQRYSQVITFVYLGSTISSVEDVGPEIKRRTGYAWSCSLKYSRAVYDNPYIAVADKVRFLKTEVLEVLLYGCMTWTLSPNDFDKLRKAHRE 366
            FGL VSE KT  M M P  ++     V A GQ Y Q   FVYLG  IS+      EI  R+  AW C  + S ++YD P      K+R L+ EV+E LLYGC +W+L+   + KL   HR+
Sbjct:   82 FGLMVSEPKTEIMCMLPNGIEERPFTVSAAGQSYKQTDRFVYLGRAISADGKADREITSRSCRAWKCFRRNSASMYDRPRANRPLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQ 202
[Close]
BLAST of mRNA_H-elongata_contig91659.16625.1 vs. uniprot
Match: A0A6H5JPY3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPY3_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.580e-21
Identity = 51/121 (42.15%), Postives = 66/121 (54.55%), Query Frame = 1 
Query:    4 FGLKVSEKKTVTMHMRPPTMKAEAVAVEAVGQRYSQVITFVYLGSTISSVEDVGPEIKRRTGYAWSCSLKYSRAVYDNPYIAVADKVRFLKTEVLEVLLYGCMTWTLSPNDFDKLRKAHRE 366
            FGL VSE KT  M M P  ++     V A GQ Y Q   FVYLG TIS+      EI  R+  AW C  + S ++YD        K+R L+ EV+E LLYGC +W+L+   + KL   HR+
Sbjct:   31 FGLMVSEPKTEIMCMLPKGIEERPFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQ 151
[Close]
BLAST of mRNA_H-elongata_contig91659.16625.1 vs. uniprot
Match: A0A6H5KIB3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB3_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.640e-21
Identity = 51/121 (42.15%), Postives = 66/121 (54.55%), Query Frame = 1 
Query:    4 FGLKVSEKKTVTMHMRPPTMKAEAVAVEAVGQRYSQVITFVYLGSTISSVEDVGPEIKRRTGYAWSCSLKYSRAVYDNPYIAVADKVRFLKTEVLEVLLYGCMTWTLSPNDFDKLRKAHRE 366
            FGL VSE KT  M M P  ++     V A GQ Y Q   FVYLG TIS+      EI  R+  AW C  + S ++YD        K+R L+ EV+E LLYGC +W+L+   + KL   HR+
Sbjct:  178 FGLMVSEPKTEIMCMLPKGIEERPFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASIYDRRRANRQLKIRLLQAEVVETLLYGCASWSLTAEHYMKLNGTHRQ 298
[Close]
BLAST of mRNA_H-elongata_contig91659.16625.1 vs. uniprot
Match: A0A6H5JWC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWC5_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 6.060e-21
Identity = 50/121 (41.32%), Postives = 65/121 (53.72%), Query Frame = 1 
Query:    4 FGLKVSEKKTVTMHMRPPTMKAEAVAVEAVGQRYSQVITFVYLGSTISSVEDVGPEIKRRTGYAWSCSLKYSRAVYDNPYIAVADKVRFLKTEVLEVLLYGCMTWTLSPNDFDKLRKAHRE 366
            FGL VSE KT  M M P  ++     V A GQ Y Q   FVYLG TIS+      EI  R+  AW C  + S ++YD        K+R L+ EV+E LLYGC +W+L+   + K    HR+
Sbjct:   12 FGLMVSEPKTEIMCMLPKGIEERPFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKCIGTHRQ 132
[Close]
BLAST of mRNA_H-elongata_contig91659.16625.1 vs. uniprot
Match: A0A6H5L5T8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T8_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 7.120e-21
Identity = 52/121 (42.98%), Postives = 66/121 (54.55%), Query Frame = 1 
Query:    4 FGLKVSEKKTVTMHMRPPTMKAEAVAVEAVGQRYSQVITFVYLGSTISSVEDVGPEIKRRTGYAWSCSLKYSRAVYDNPYIAVADKVRFLKTEVLEVLLYGCMTWTLSPNDFDKLRKAHRE 366
            FGL VSE KT  M M P  +     AV A GQ Y Q   FVYLG TIS+      EI  R+  AW C  + S ++YD        K+R L+ EV+E LLYGC +W+L+   + KL   HR+
Sbjct:  132 FGLMVSEPKTEIMCMLPKGLGERPFAVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQ 252
[Close]
BLAST of mRNA_H-elongata_contig91659.16625.1 vs. uniprot
Match: A0A6H5KQK1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK1_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 7.500e-21
Identity = 50/121 (41.32%), Postives = 67/121 (55.37%), Query Frame = 1 
Query:    4 FGLKVSEKKTVTMHMRPPTMKAEAVAVEAVGQRYSQVITFVYLGSTISSVEDVGPEIKRRTGYAWSCSLKYSRAVYDNPYIAVADKVRFLKTEVLEVLLYGCMTWTLSPNDFDKLRKAHRE 366
            FGL VSE KT  M M P  ++     V A GQ Y Q+  FVYLG TIS+      EI  R+  AW C  + S ++YD        K+R ++ EV+E LLYGC +W+L+   + KL   HR+
Sbjct:  206 FGLMVSEPKTEIMCMLPKGIEERPFTVSAAGQMYKQIDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASIYDRRRTDRQLKIRLIQAEVVETLLYGCASWSLTAEHYTKLNGTHRQ 326
[Close]
BLAST of mRNA_H-elongata_contig91659.16625.1 vs. uniprot
Match: A0A6H5KKU2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKU2_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 8.110e-21
Identity = 51/121 (42.15%), Postives = 66/121 (54.55%), Query Frame = 1 
Query:    4 FGLKVSEKKTVTMHMRPPTMKAEAVAVEAVGQRYSQVITFVYLGSTISSVEDVGPEIKRRTGYAWSCSLKYSRAVYDNPYIAVADKVRFLKTEVLEVLLYGCMTWTLSPNDFDKLRKAHRE 366
            FGL VSE KT  M M P  ++     V A GQ Y Q   FVYLG TIS+      EI  R+  AW C  + S ++YD        K+R L+ EV+E LLYGC +W+L+   + KL   HR+
Sbjct:  479 FGLMVSEPKTEIMCMLPKGIEEHPFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQHKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQ 599
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig91659.16625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKH3_9PHAE2.370e-2242.15Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L020_9PHAE1.750e-2143.80Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KBT2_9PHAE1.890e-2140.94Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L5J5_9PHAE3.130e-2142.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPY3_9PHAE4.580e-2142.15Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KIB3_9PHAE4.640e-2142.15Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JWC5_9PHAE6.060e-2141.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5T8_9PHAE7.120e-2142.98Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQK1_9PHAE7.500e-2141.32Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKU2_9PHAE8.110e-2142.15Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig91659contigH-elongata_contig91659:14..388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score67.8
Seed ortholog evalue4.1e-09
Seed eggNOG ortholog6500.XP_005110414.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39TZY@33154,3BI15@33208,3E41I@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931314.8353353-CDS-H-elongata_contig91659:13..3881622931314.8353353-CDS-H-elongata_contig91659:13..388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91659 14..388 +
1691679785.854351-CDS-H-elongata_contig91659:13..3881691679785.854351-CDS-H-elongata_contig91659:13..388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91659 14..388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig91659.16625.1prot_H-elongata_contig91659.16625.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig91659 14..388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig91659.16625.1

>prot_H-elongata_contig91659.16625.1 ID=prot_H-elongata_contig91659.16625.1|Name=mRNA_H-elongata_contig91659.16625.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
AFGLKVSEKKTVTMHMRPPTMKAEAVAVEAVGQRYSQVITFVYLGSTISS
VEDVGPEIKRRTGYAWSCSLKYSRAVYDNPYIAVADKVRFLKTEVLEVLL
YGCMTWTLSPNDFDKLRKAHRECC*
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mRNA from alignment at H-elongata_contig91659:14..388+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig91659.16625.1 ID=mRNA_H-elongata_contig91659.16625.1|Name=mRNA_H-elongata_contig91659.16625.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=375bp|location=Sequence derived from alignment at H-elongata_contig91659:14..388+ (Himanthalia elongata Himel1 dioecious)
GCGTTCGGCCTCAAAGTGTCGGAAAAGAAGACGGTGACCATGCACATGCG
CCCCCCCACCATGAAGGCAGAAGCGGTTGCCGTGGAGGCCGTGGGGCAAA
GGTACAGCCAAGTCATCACCTTCGTGTATCTTGGTAGCACCATCAGCAGC
GTTGAGGACGTCGGCCCTGAGATCAAACGCCGTACTGGCTACGCCTGGAG
CTGCTCCCTCAAGTACAGCAGGGCGGTGTATGACAACCCATATATCGCAG
TGGCAGACAAGGTCCGTTTCCTGAAGACGGAAGTACTCGAGGTCCTGCTC
TACGGCTGTATGACCTGGACTCTTTCACCCAACGACTTCGACAAGCTGCG
AAAAGCCCACCGCGAATGCTGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig91659:14..388+

>mRNA_H-elongata_contig91659.16625.1 ID=mRNA_H-elongata_contig91659.16625.1|Name=mRNA_H-elongata_contig91659.16625.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig91659:14..388+ (Himanthalia elongata Himel1 dioecious)
GCGTTCGGCCTCAAAGTGTCGGAAAAGAAGACGGTGACCATGCACATGCG
CCCCCCCACCATGAAGGCAGAAGCGGTTGCCGTGGAGGCCGTGGGGCAAA
GGTACAGCCAAGTCATCACCTTCGTGTATCTTGGTAGCACCATCAGCAGC
GTTGAGGACGTCGGCCCTGAGATCAAACGCCGTACTGGCTACGCCTGGAG
CTGCTCCCTCAAGTACAGCAGGGCGGTGTATGACAACCCATATATCGCAG
TGGCAGACAAGGTCCGTTTCCTGAAGACGGAAGTACTCGAGGTCCTGCTC
TACGGCTGTATGACCTGGACTCTTTCACCCAACGACTTCGACAAGCTGCG
AAAAGCCCACCGCGAATGCTGCTGAGCGTTCGGCCTCAAAGTGTCGGAAA
AGAAGACGGTGACCATGCACATGCGCCCCCCCACCATGAAGGCAGAAGCG
GTTGCCGTGGAGGCCGTGGGGCAAAGGTACAGCCAAGTCATCACCTTCGT
GTATCTTGGTAGCACCATCAGCAGCGTTGAGGACGTCGGCCCTGAGATCA
AACGCCGTACTGGCTACGCCTGGAGCTGCTCCCTCAAGTACAGCAGGGCG
GTGTATGACAACCCATATATCGCAGTGGCAGACAAGGTCCGTTTCCTGAA
GACGGAAGTACTCGAGGTCCTGCTCTACGGCTGTATGACCTGGACTCTTT
CACCCAACGACTTCGACAAGCTGCGAAAAGCCCACCGCGAATGCTGCTGA
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