mRNA_H-elongata_contig91646.16624.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig91646.16624.1
Unique NamemRNA_H-elongata_contig91646.16624.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig91646.16624.1 vs. uniprot
Match: D8LMY3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMY3_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 2.440e-27
Identity = 57/84 (67.86%), Postives = 73/84 (86.90%), Query Frame = 1 
Query:    1 LQEMADRLSKLEGLAGKHDTLTATLLREHQEEMLVKLREIRDALANESGELESVKAANDEVARLREVIKRKDYRIVHLTRALDA 252
            ++EM ++LSKLEGLAG +D    TLL++HQ+EML KLREIR A+A E+GEL+SVK AN EVA+LREVIKR+DYRI+HL+RAL+A
Sbjct:    5 IKEMTEQLSKLEGLAGGNDG--HTLLQQHQKEMLAKLREIRAAMATETGELDSVKEANAEVAKLREVIKRRDYRILHLSRALEA 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig91646.16624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMY3_ECTSI2.440e-2767.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig91646contigH-elongata_contig91646:1105..2552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_004110.1
Exons2
Model size264
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig91646.16624.1prot_H-elongata_contig91646.16624.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig91646 1114..2552 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931314.7497206-UTR-H-elongata_contig91646:1104..11131622931314.7497206-UTR-H-elongata_contig91646:1104..1113Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig91646 1105..1113 +
1691679785.8153033-UTR-H-elongata_contig91646:1104..11131691679785.8153033-UTR-H-elongata_contig91646:1104..1113Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig91646 1105..1113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931314.7697897-CDS-H-elongata_contig91646:1113..11721622931314.7697897-CDS-H-elongata_contig91646:1113..1172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91646 1114..1172 +
1691679785.8324502-CDS-H-elongata_contig91646:1113..11721691679785.8324502-CDS-H-elongata_contig91646:1113..1172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91646 1114..1172 +
1622931314.7869291-CDS-H-elongata_contig91646:2356..25521622931314.7869291-CDS-H-elongata_contig91646:2356..2552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91646 2357..2552 +
1691679785.843197-CDS-H-elongata_contig91646:2356..25521691679785.843197-CDS-H-elongata_contig91646:2356..2552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91646 2357..2552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig91646.16624.1

>prot_H-elongata_contig91646.16624.1 ID=prot_H-elongata_contig91646.16624.1|Name=mRNA_H-elongata_contig91646.16624.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
MADRLSKLEGLAGKHDTLTATLLREHQEEMLVKLREIRDALANESGELES
VKAANDEVARLREVIKRKDYRIVHLTRALDAVNP*
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mRNA from alignment at H-elongata_contig91646:1105..2552+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig91646.16624.1 ID=mRNA_H-elongata_contig91646.16624.1|Name=mRNA_H-elongata_contig91646.16624.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1448bp|location=Sequence derived from alignment at H-elongata_contig91646:1105..2552+ (Himanthalia elongata Himel1 dioecious)
CTGCAGGAAATGGCCGACCGGCTCTCAAAGCTCGAGGGACTTGCAGGCAA
GCACGACACCTTGACGGCGTAGACGACTTGATGCTACCACTGCCGTGGGC
ATCGTGGGCGATTTCAAGTACCACGCGACTTTTGTTGATTGTTGGGCCTT
GTGTGTGCAATAGGAGCGCTTTTCCACCTTCATCGACCGAGCGACACTCG
TTGACTATTCACGAAGTTCCATCTCAGGAGGCTATCTGCTTCGGGCTCTA
GTTATGGTGTCATCATTTCGCCTGCGGCAGTCGCTCTTCCGGTCATAAAG
ACACGGTGTTGTAGAGACTAACAGAGATGCTTTGCAATTTGTCCCCCCCA
CCCCCTCCCCTCCACTTCCGGGTTCTCTCTATTCTCTCTTGTGACATGAA
GCTGTAAAACTGCTATTTTTAGGGCATGGGGAAAGTTCATGCATGGTGCC
GTGTGATTTCAGAGATCTCGATCGAAGGGCCTTGTTGTCTCTCTCTCTCT
CTTCCCAAAGTGGTGAAGAGCATCACTTTTTGTATGCATTTGTGTATAGG
ACGCCAGCTGAACAATATATTTGGTGAACGCCTCAAGAGCAACAATGGAC
TTACGAGATTTCTCCATCAGGAGTATTACATGACCAGATTATGGTCCCCG
AGTGTATGTGGTGTGCGTTCGGCGCTTGTGCGTTCGCAATGGAGATACTA
GGGAGTACGTCGTGCCCACTGAATGGGCAGTGCAACACATGGTTATCCAT
TTTGGCGTAGTAGCAAACCTATAGATGGCGACGAAAAGCTAGTATTAGTA
GCATCCTTGTGAAACGCAGCGTGGCCAGCGAAAACCCGGCAAATCGTATC
GCTCCGTCCCGATATTGTTGGAATGAGACATTCGTGATATATGCCCCTAG
AACACGACATGCATTTAAATACAAGTACACCCCCACCCTGGCCTAACAGC
GAAGGCATACAATATTTAACATGATTACAACTTCCTCCCCCCCCCCCTCC
CCTTTCACACGCCTCCATCGTCTCAAGAACATTTTAGCGCATGATGGTTC
ACCCTCGACAGCGACAGAAACTTCCACTCGACGCGCGATTCGCCCACTTC
AAAGTAACATACAAAACAAGAAGCTTGAGTAAAAAATACGAGAGAGATAG
AGATAGAGATAGAGATAAACCTCTCTTATCCCCACTCCCCACCCTCTAAA
ACAAACTTTGTTTTCTTACTGTTTCAAGCACAGGGCCGCAATCAGACTGT
AGGACTCTGCTCCGAGAGCACCAAGAAGAGATGCTCGTGAAGCTGAGAGA
GATCCGAGACGCGCTGGCAAACGAGAGCGGCGAGCTCGAGTCCGTCAAGG
CGGCGAACGACGAGGTGGCCAGGTTGCGGGAGGTCATCAAGAGAAAAGAC
TACCGCATCGTGCATCTCACGCGGGCATTGGATGCCGTCAACCCCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig91646:1105..2552+

>mRNA_H-elongata_contig91646.16624.1 ID=mRNA_H-elongata_contig91646.16624.1|Name=mRNA_H-elongata_contig91646.16624.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig91646:1105..2552+ (Himanthalia elongata Himel1 dioecious)
ATGGCCGACCGGCTCTCAAAGCTCGAGGGACTTGCAGGCAAGCACGACAC
CTTGACGGCATGGCCGACCGGCTCTCAAAGCTCGAGGGACTTGCAGGCAA
GCACGACACCTTGACGGCGACTCTGCTCCGAGAGCACCAAGAAGAGATGC
TCGTGAAGCTGAGAGAGATCCGAGACGCGCTGGCAAACGAGAGCGGCGAG
CTCGAGTCCGTCAAGGCGGCGAACGACGAGGTGGCCAGGTTGCGGGAGGT
CATCAAGAGAAAAGACTACCGCATCGTGCATCTCACGCGGGCATTGGATG
CCGTCAACCCCTAGGACTCTGCTCCGAGAGCACCAAGAAGAGATGCTCGT
GAAGCTGAGAGAGATCCGAGACGCGCTGGCAAACGAGAGCGGCGAGCTCG
AGTCCGTCAAGGCGGCGAACGACGAGGTGGCCAGGTTGCGGGAGGTCATC
AAGAGAAAAGACTACCGCATCGTGCATCTCACGCGGGCATTGGATGCCGT
CAACCCCTAG
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