mRNA_H-elongata_contig91638.16623.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig91638.16623.1
Unique NamemRNA_H-elongata_contig91638.16623.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig91638.16623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig91638contigH-elongata_contig91638:1978..2429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size155
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931314.6915233-CDS-H-elongata_contig91638:1978..20521622931314.6915233-CDS-H-elongata_contig91638:1978..2052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91638 1979..2052 -
1691679785.782292-CDS-H-elongata_contig91638:1978..20521691679785.782292-CDS-H-elongata_contig91638:1978..2052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91638 1979..2052 -
1622931314.7113507-CDS-H-elongata_contig91638:2350..24291622931314.7113507-CDS-H-elongata_contig91638:2350..2429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91638 2351..2429 -
1691679785.7970479-CDS-H-elongata_contig91638:2350..24291691679785.7970479-CDS-H-elongata_contig91638:2350..2429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91638 2351..2429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig91638.16623.1prot_H-elongata_contig91638.16623.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig91638 1979..2429 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig91638.16623.1

>prot_H-elongata_contig91638.16623.1 ID=prot_H-elongata_contig91638.16623.1|Name=mRNA_H-elongata_contig91638.16623.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
SRVYTINNFAAVHHRASQAKLTEPEEAIVVWASGSTLISTVEAIITSTLG
K
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mRNA from alignment at H-elongata_contig91638:1978..2429-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig91638.16623.1 ID=mRNA_H-elongata_contig91638.16623.1|Name=mRNA_H-elongata_contig91638.16623.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=452bp|location=Sequence derived from alignment at H-elongata_contig91638:1978..2429- (Himanthalia elongata Himel1 dioecious)
TCACGAGTTTACACAATAAATAACTTTGCGGCAGTGCATCATCGAGCTTC
TCAAGCGAAGTTGACGGAACCAGAGGAAGGTGAGAGTTTATCATAACACG
ATTCGGTGGTGCAATATATCTTGATGAGCTGAAGGTTACGTAACGTGAGG
CATGGGAGAGTGTGTGCGTATCGCAAATTTGCCCTCAAGTTGACCGTATC
GGGCTCGTAGTCAACATGTCCTCACAGTCGCTTTTGCCAGAAAATATGTA
TAGAATATACAGTCCACACATCGAAACCAAACCACGCTACAGTACCTGAA
TGTAGTTGTACCGATACCTAGCGTTGTCACTTTTTTTCGCCTCAGCGCTG
TGCGGTTGTGCTCCCTGTGCGCAGCAGCTATTGTGGTGTGGGCCTCAGGA
TCGACGCTTATCTCCACCGTGGAGGCAATCATCACATCGACTCTGGGTAA
AT
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Coding sequence (CDS) from alignment at H-elongata_contig91638:1978..2429-

>mRNA_H-elongata_contig91638.16623.1 ID=mRNA_H-elongata_contig91638.16623.1|Name=mRNA_H-elongata_contig91638.16623.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig91638:1978..2429- (Himanthalia elongata Himel1 dioecious)
TCACGAGTTTACACAATAAATAACTTTGCGGCAGTGCATCATCGAGCTTC
TCAAGCGAAGTTGACGGAACCAGAGGAAGTCACGAGTTTACACAATAAAT
AACTTTGCGGCAGTGCATCATCGAGCTTCTCAAGCGAAGTTGACGGAACC
AGAGGAAGCTATTGTGGTGTGGGCCTCAGGATCGACGCTTATCTCCACCG
TGGAGGCAATCATCACATCGACTCTGGGTAAACTATTGTGGTGTGGGCCT
CAGGATCGACGCTTATCTCCACCGTGGAGGCAATCATCACATCGACTCTG
GGTAAA
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