mRNA_H-elongata_contig91612.16621.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig91612.16621.1
Unique NamemRNA_H-elongata_contig91612.16621.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig91612.16621.1 vs. uniprot
Match: D8LSW5_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW5_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.100e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 IQVGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 120
            + VGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ
Sbjct:  221 LSVGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 260
[Close]
BLAST of mRNA_H-elongata_contig91612.16621.1 vs. uniprot
Match: A0A6H5JDN6_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN6_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.590e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 IQVGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 120
            + VGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ
Sbjct: 1337 LSVGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 1376
[Close]
BLAST of mRNA_H-elongata_contig91612.16621.1 vs. uniprot
Match: D8LSW4_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW4_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.590e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 IQVGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 120
            + VGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ
Sbjct: 1317 LSVGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 1356
[Close]
BLAST of mRNA_H-elongata_contig91612.16621.1 vs. uniprot
Match: D8LSW3_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW3_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.590e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 IQVGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 120
            + VGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ
Sbjct: 1286 LSVGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 1325
[Close]
BLAST of mRNA_H-elongata_contig91612.16621.1 vs. uniprot
Match: A0A6H5JDL0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 6.600e-14
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 IQVGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 120
            + VGQRQLLCLARAVLQR+QILVMDEATANIDQHTDSLIQ
Sbjct: 1236 LSVGQRQLLCLARAVLQRTQILVMDEATANIDQHTDSLIQ 1275
[Close]
BLAST of mRNA_H-elongata_contig91612.16621.1 vs. uniprot
Match: N6UP16_DENPD (ABC transporter domain-containing protein (Fragment) n=2 Tax=Dendroctonus ponderosae TaxID=77166 RepID=N6UP16_DENPD)

HSP 1 Score: 62.8 bits (151), Expect = 3.480e-11
Identity = 28/37 (75.68%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:   10 GQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 120
            GQRQL+CLARA+++ ++IL+MDEATAN+DQHTDSLIQ
Sbjct:   33 GQRQLICLARAIVRNNKILIMDEATANVDQHTDSLIQ 69
[Close]
BLAST of mRNA_H-elongata_contig91612.16621.1 vs. uniprot
Match: A0A2R4FX81_9CUCU (ABC transporter C (Fragment) n=1 Tax=Lissorhoptrus oryzophilus TaxID=308863 RepID=A0A2R4FX81_9CUCU)

HSP 1 Score: 64.7 bits (156), Expect = 4.650e-11
Identity = 30/39 (76.92%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:    7 VGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQV 123
            VGQRQL+CLARA+++R++ILVMDEATAN+D HTD+LIQV
Sbjct:  357 VGQRQLVCLARAIIRRNKILVMDEATANVDPHTDALIQV 395
[Close]
BLAST of mRNA_H-elongata_contig91612.16621.1 vs. uniprot
Match: A0A2H8TQ56_9HEMI (Multidrug resistance-associated protein 4 n=3 Tax=Melanaphis sacchari TaxID=742174 RepID=A0A2H8TQ56_9HEMI)

HSP 1 Score: 61.6 bits (148), Expect = 5.430e-11
Identity = 28/38 (73.68%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    7 VGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 120
            VGQRQL+CLARA++Q ++ILV+DEATAN+D HTD+LIQ
Sbjct:   10 VGQRQLICLARAIIQSNKILVLDEATANVDPHTDALIQ 47
[Close]
BLAST of mRNA_H-elongata_contig91612.16621.1 vs. uniprot
Match: N6UIT0_DENPD (ABC transporter domain-containing protein (Fragment) n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=N6UIT0_DENPD)

HSP 1 Score: 62.8 bits (151), Expect = 5.850e-11
Identity = 28/37 (75.68%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:   10 GQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 120
            GQ+QL+CLARA++++++ILVMDEATAN+DQHTDSLIQ
Sbjct:   63 GQKQLICLARAIVRKNKILVMDEATANVDQHTDSLIQ 99
[Close]
BLAST of mRNA_H-elongata_contig91612.16621.1 vs. uniprot
Match: A0A6P6YL70_DERPT (multidrug resistance-associated protein 4-like n=1 Tax=Dermatophagoides pteronyssinus TaxID=6956 RepID=A0A6P6YL70_DERPT)

HSP 1 Score: 64.3 bits (155), Expect = 6.360e-11
Identity = 30/40 (75.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 IQVGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQ 120
            + VGQRQL+CLARA+L+R++ILV+DEATAN+D HTDSLIQ
Sbjct: 1189 LSVGQRQLICLARALLRRNKILVLDEATANVDHHTDSLIQ 1228
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig91612.16621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSW5_ECTSI2.100e-1495.00ABC transporter domain-containing protein n=1 Tax=... [more]
A0A6H5JDN6_9PHAE2.590e-1495.00ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LSW4_ECTSI2.590e-1495.00Multidrug resistance-associated protein-like prote... [more]
D8LSW3_ECTSI2.590e-1495.00Multidrug resistance-associated protein-like prote... [more]
A0A6H5JDL0_9PHAE6.600e-1492.50ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
N6UP16_DENPD3.480e-1175.68ABC transporter domain-containing protein (Fragmen... [more]
A0A2R4FX81_9CUCU4.650e-1176.92ABC transporter C (Fragment) n=1 Tax=Lissorhoptrus... [more]
A0A2H8TQ56_9HEMI5.430e-1173.68Multidrug resistance-associated protein 4 n=3 Tax=... [more]
N6UIT0_DENPD5.850e-1175.68ABC transporter domain-containing protein (Fragmen... [more]
A0A6P6YL70_DERPT6.360e-1175.00multidrug resistance-associated protein 4-like n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig91612contigH-elongata_contig91612:2144..2266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog2880.D8LSW3
KEGG koko:K05673
KEGG TC3.A.1.208.7
KEGG Pathwayko01523,ko02010,ko04024,ko04976,map01523,map02010,map04024,map04976
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931314.5196245-CDS-H-elongata_contig91612:2143..22661622931314.5196245-CDS-H-elongata_contig91612:2143..2266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91612 2144..2266 +
1691679785.6790295-CDS-H-elongata_contig91612:2143..22661691679785.6790295-CDS-H-elongata_contig91612:2143..2266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91612 2144..2266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig91612.16621.1prot_H-elongata_contig91612.16621.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig91612 2144..2266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig91612.16621.1

>prot_H-elongata_contig91612.16621.1 ID=prot_H-elongata_contig91612.16621.1|Name=mRNA_H-elongata_contig91612.16621.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
IQVGQRQLLCLARAVLQRSQILVMDEATANIDQHTDSLIQV
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mRNA from alignment at H-elongata_contig91612:2144..2266+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig91612.16621.1 ID=mRNA_H-elongata_contig91612.16621.1|Name=mRNA_H-elongata_contig91612.16621.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig91612:2144..2266+ (Himanthalia elongata Himel1 dioecious)
ATACAGGTCGGTCAACGGCAACTACTCTGCCTCGCCAGAGCCGTCTTGCA
GAGGTCGCAGATCCTCGTCATGGACGAGGCTACAGCCAACATTGACCAAC
ACACTGATTCCCTTATACAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig91612:2144..2266+

>mRNA_H-elongata_contig91612.16621.1 ID=mRNA_H-elongata_contig91612.16621.1|Name=mRNA_H-elongata_contig91612.16621.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig91612:2144..2266+ (Himanthalia elongata Himel1 dioecious)
ATACAGGTCGGTCAACGGCAACTACTCTGCCTCGCCAGAGCCGTCTTGCA
GAGGTCGCAGATCCTCGTCATGGACGAGGCTACAGCCAACATTGACCAAC
ACACTGATTCCCTTATACAGGTGATACAGGTCGGTCAACGGCAACTACTC
TGCCTCGCCAGAGCCGTCTTGCAGAGGTCGCAGATCCTCGTCATGGACGA
GGCTACAGCCAACATTGACCAACACACTGATTCCCTTATACAGGTG
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