prot_H-elongata_contig121728.1661.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig121728.1661.1
Unique Nameprot_H-elongata_contig121728.1661.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length72
Homology
BLAST of mRNA_H-elongata_contig121728.1661.1 vs. uniprot
Match: A0A6H5KTK4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTK4_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.020e-40
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0
Query:    1 MIIPVRCFTCGRVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNCKWRR 68
            MIIPVRCFTCG+VIGNKWETYLSLLQAD+NEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN   RR
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR 68          
BLAST of mRNA_H-elongata_contig121728.1661.1 vs. uniprot
Match: A0A7S1V7Q3_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1V7Q3_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.770e-38
Identity = 59/63 (93.65%), Postives = 63/63 (100.00%), Query Frame = 0
Query:    1 MIIPVRCFTCGRVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCG+VIGNKWETYLSLLQAD++EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN
Sbjct:   33 MIIPVRCFTCGKVIGNKWETYLSLLQADYSEGDALDELGLKRYCCRRMLLTHVDLIEKLLNYN 95          
BLAST of mRNA_H-elongata_contig121728.1661.1 vs. uniprot
Match: A0A1E7EXD3_9STRA (DNA-directed RNA polymerases I, II, and III subunit rpabc5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EXD3_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.870e-38
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0
Query:    1 MIIPVRCFTCGRVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCG+VI NKWETYLSLLQADF+EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN
Sbjct:    1 MIIPVRCFTCGKVIANKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYN 63          
BLAST of mRNA_H-elongata_contig121728.1661.1 vs. uniprot
Match: A0A836CHW2_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHW2_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.980e-38
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 0
Query:    1 MIIPVRCFTCGRVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNCKWRR 68
            MIIPVRCFTCG+VIGNKWETYL LLQ+D +EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN   RR
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLGLLQSDISEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR 68          
BLAST of mRNA_H-elongata_contig121728.1661.1 vs. uniprot
Match: A0A7R9WWK7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WWK7_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.000e-38
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 0
Query:    1 MIIPVRCFTCGRVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCG+VIGNKWETYLSLLQADF+EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN
Sbjct:   74 MIIPVRCFTCGKVIGNKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYN 136          
BLAST of mRNA_H-elongata_contig121728.1661.1 vs. uniprot
Match: F0YLY9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLY9_AURAN)

HSP 1 Score: 130 bits (327), Expect = 3.070e-38
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 0
Query:    1 MIIPVRCFTCGRVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNCKWRRL 69
            MIIPVRCFTCG+VIGNKWE+YL LL+AD++EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN   RR+
Sbjct:    1 MIIPVRCFTCGKVIGNKWESYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNTLERRV 69          
BLAST of mRNA_H-elongata_contig121728.1661.1 vs. uniprot
Match: A0A7S4EET2_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EET2_9STRA)

HSP 1 Score: 130 bits (328), Expect = 4.920e-38
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0
Query:    1 MIIPVRCFTCGRVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCG+VI NKWETYLSLLQADF+EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN
Sbjct:   34 MIIPVRCFTCGKVIANKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYN 96          
BLAST of mRNA_H-elongata_contig121728.1661.1 vs. uniprot
Match: A0A8J2SAT8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SAT8_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.210e-37
Identity = 57/69 (82.61%), Postives = 65/69 (94.20%), Query Frame = 0
Query:    1 MIIPVRCFTCGRVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNCKWRRL 69
            MIIPVRCFTCG+V+GNKW++YL LL+AD++EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN   RR+
Sbjct:    1 MIIPVRCFTCGKVVGNKWDSYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNTLERRV 69          
BLAST of mRNA_H-elongata_contig121728.1661.1 vs. uniprot
Match: B8C402_THAPS (DNA directed RNA polymerase II subunit, 8.2kDa, rpb10-like protein (Fragment) n=3 Tax=Bacillariophyta TaxID=2836 RepID=B8C402_THAPS)

HSP 1 Score: 128 bits (322), Expect = 1.240e-37
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 0
Query:    1 MIIPVRCFTCGRVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCG+VIGNKWETYL LLQAD++EGDALDELGL+RYCCRRM+LTHVDLIEKLLNYN
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLYLLQADYSEGDALDELGLRRYCCRRMMLTHVDLIEKLLNYN 63          
BLAST of mRNA_H-elongata_contig121728.1661.1 vs. uniprot
Match: I4YD10_WALMC (Uncharacterized protein n=3 Tax=Wallemia TaxID=148959 RepID=I4YD10_WALMC)

HSP 1 Score: 126 bits (317), Expect = 1.410e-36
Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 0
Query:    1 MIIPVRCFTCGRVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNCKWRRL 69
            MIIPVRCF+CG+V+G+KWE YL LLQAD  EGDA+D+LGL+RYCCRRM+LTHVDLIEKLLNYNCK  R+
Sbjct:    1 MIIPVRCFSCGKVVGDKWEAYLDLLQADITEGDAMDKLGLRRYCCRRMILTHVDLIEKLLNYNCKVYRI 69          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121728.1661.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTK4_9PHAE1.020e-4092.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1V7Q3_9STRA1.770e-3893.65Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
A0A1E7EXD3_9STRA1.870e-3893.65DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A836CHW2_9STRA1.980e-3888.24DNA-directed RNA polymerase I, II, and III subunit... [more]
A0A7R9WWK7_9STRA2.000e-3895.24Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
F0YLY9_AURAN3.070e-3885.51Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S4EET2_9STRA4.920e-3893.65Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A8J2SAT8_9STRA1.210e-3782.61Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
B8C402_THAPS1.240e-3790.48DNA directed RNA polymerase II subunit, 8.2kDa, rp... [more]
I4YD10_WALMC1.410e-3678.26Uncharacterized protein n=3 Tax=Wallemia TaxID=148... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.60coord: 1..70
e-value: 8.0E-38
score: 130.2
NoneNo IPR availablePANTHERPTHR23431:SF5coord: 1..64
NoneNo IPR availablePRODOMPD006539coord: 9..63
e-value: 2.0E-17
score: 212.0
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10PFAMPF01194RNA_pol_Ncoord: 1..59
e-value: 8.6E-33
score: 112.4
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10PIRSFPIRSF005653RpoN_RPB10coord: 1..71
e-value: 1.3E-32
score: 109.5
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10PANTHERPTHR23431FAMILY NOT NAMEDcoord: 1..64
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10HAMAPMF_00250RNApol_arch_Ncoord: 1..63
score: 19.887
IPR020789RNA polymerases, subunit N, zinc binding sitePROSITEPS01112RNA_POL_N_8KDcoord: 2..11
IPR023580RNA polymerase subunit RPB10SUPERFAMILY46924RNA polymerase subunit RPB10coord: 1..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121728contigH-elongata_contig121728:74..289 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121728.1661.1mRNA_H-elongata_contig121728.1661.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig121728 74..289 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig121728.1661.1 ID=prot_H-elongata_contig121728.1661.1|Name=mRNA_H-elongata_contig121728.1661.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MIIPVRCFTCGRVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVL
THVDLIEKLLNYNCKWRRLKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000268RNAP_N/Rpb10
IPR020789RNA_pol_suN_Zn-BS
IPR023580RNA_pol_su_RPB10