mRNA_H-elongata_contig121728.1661.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121728.1661.1
Unique NamemRNA_H-elongata_contig121728.1661.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig121728.1661.1 vs. uniprot
Match: A0A6H5KTK4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTK4_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.020e-40
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:    1 MIIPVRCFTCGRVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNCKWRR 204
            MIIPVRCFTCG+VIGNKWETYLSLLQAD+NEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN   RR
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR 68
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BLAST of mRNA_H-elongata_contig121728.1661.1 vs. uniprot
Match: A0A7S1V7Q3_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1V7Q3_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.770e-38
Identity = 59/63 (93.65%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 MIIPVRCFTCGRVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 189
            MIIPVRCFTCG+VIGNKWETYLSLLQAD++EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN
Sbjct:   33 MIIPVRCFTCGKVIGNKWETYLSLLQADYSEGDALDELGLKRYCCRRMLLTHVDLIEKLLNYN 95
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BLAST of mRNA_H-elongata_contig121728.1661.1 vs. uniprot
Match: A0A1E7EXD3_9STRA (DNA-directed RNA polymerases I, II, and III subunit rpabc5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EXD3_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.870e-38
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:    1 MIIPVRCFTCGRVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 189
            MIIPVRCFTCG+VI NKWETYLSLLQADF+EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN
Sbjct:    1 MIIPVRCFTCGKVIANKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYN 63
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BLAST of mRNA_H-elongata_contig121728.1661.1 vs. uniprot
Match: A0A836CHW2_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHW2_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.980e-38
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 MIIPVRCFTCGRVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNCKWRR 204
            MIIPVRCFTCG+VIGNKWETYL LLQ+D +EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN   RR
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLGLLQSDISEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR 68
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BLAST of mRNA_H-elongata_contig121728.1661.1 vs. uniprot
Match: A0A7R9WWK7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WWK7_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.000e-38
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 MIIPVRCFTCGRVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 189
            MIIPVRCFTCG+VIGNKWETYLSLLQADF+EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN
Sbjct:   74 MIIPVRCFTCGKVIGNKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYN 136
[Close]
BLAST of mRNA_H-elongata_contig121728.1661.1 vs. uniprot
Match: F0YLY9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLY9_AURAN)

HSP 1 Score: 130 bits (327), Expect = 3.070e-38
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:    1 MIIPVRCFTCGRVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNCKWRRL 207
            MIIPVRCFTCG+VIGNKWE+YL LL+AD++EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN   RR+
Sbjct:    1 MIIPVRCFTCGKVIGNKWESYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNTLERRV 69
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BLAST of mRNA_H-elongata_contig121728.1661.1 vs. uniprot
Match: A0A7S4EET2_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EET2_9STRA)

HSP 1 Score: 130 bits (328), Expect = 4.920e-38
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:    1 MIIPVRCFTCGRVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 189
            MIIPVRCFTCG+VI NKWETYLSLLQADF+EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN
Sbjct:   34 MIIPVRCFTCGKVIANKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYN 96
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BLAST of mRNA_H-elongata_contig121728.1661.1 vs. uniprot
Match: A0A8J2SAT8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SAT8_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.210e-37
Identity = 57/69 (82.61%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:    1 MIIPVRCFTCGRVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNCKWRRL 207
            MIIPVRCFTCG+V+GNKW++YL LL+AD++EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN   RR+
Sbjct:    1 MIIPVRCFTCGKVVGNKWDSYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNTLERRV 69
[Close]
BLAST of mRNA_H-elongata_contig121728.1661.1 vs. uniprot
Match: B8C402_THAPS (DNA directed RNA polymerase II subunit, 8.2kDa, rpb10-like protein (Fragment) n=3 Tax=Bacillariophyta TaxID=2836 RepID=B8C402_THAPS)

HSP 1 Score: 128 bits (322), Expect = 1.240e-37
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:    1 MIIPVRCFTCGRVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 189
            MIIPVRCFTCG+VIGNKWETYL LLQAD++EGDALDELGL+RYCCRRM+LTHVDLIEKLLNYN
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLYLLQADYSEGDALDELGLRRYCCRRMMLTHVDLIEKLLNYN 63
[Close]
BLAST of mRNA_H-elongata_contig121728.1661.1 vs. uniprot
Match: I4YD10_WALMC (Uncharacterized protein n=3 Tax=Wallemia TaxID=148959 RepID=I4YD10_WALMC)

HSP 1 Score: 126 bits (317), Expect = 1.410e-36
Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:    1 MIIPVRCFTCGRVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNCKWRRL 207
            MIIPVRCF+CG+V+G+KWE YL LLQAD  EGDA+D+LGL+RYCCRRM+LTHVDLIEKLLNYNCK  R+
Sbjct:    1 MIIPVRCFSCGKVVGDKWEAYLDLLQADITEGDAMDKLGLRRYCCRRMILTHVDLIEKLLNYNCKVYRI 69
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121728.1661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTK4_9PHAE1.020e-4092.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1V7Q3_9STRA1.770e-3893.65Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
A0A1E7EXD3_9STRA1.870e-3893.65DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A836CHW2_9STRA1.980e-3888.24DNA-directed RNA polymerase I, II, and III subunit... [more]
A0A7R9WWK7_9STRA2.000e-3895.24Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
F0YLY9_AURAN3.070e-3885.51Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S4EET2_9STRA4.920e-3893.65Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A8J2SAT8_9STRA1.210e-3782.61Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
B8C402_THAPS1.240e-3790.48DNA directed RNA polymerase II subunit, 8.2kDa, rp... [more]
I4YD10_WALMC1.410e-3678.26Uncharacterized protein n=3 Tax=Wallemia TaxID=148... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121728contigH-elongata_contig121728:74..289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue3.5e-29
Seed eggNOG ortholog2850.Phatr10821
Preferred namePOLR2L
KEGG rclassRC02795
KEGG koko:K02912,ko:K03007,ko:K11313,ko:K15271
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03010,ko03020,ko04623,ko05016,ko05169,ko05202,map00230,map00240,map01100,map03010,map03020,map04623,map05016,map05169,map05202
KEGG ModuleM00177,M00179,M00180,M00181,M00182
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000418,GO:0000419,GO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006356,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006383,GO:0006396,GO:0006397,GO:0006399,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009304,GO:0009452,GO:0009719,GO:0009889,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0023052,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0040029,GO:0042221,GO:0042795,GO:0042797,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0046872,GO:0046914,GO:0048518,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0080090,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.RNA polymerases N / 8 kDa subunit
EggNOG OGs2XH5G@2836,COG1644@1,KOG3497@2759
EC3.6.4.12
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEbr01610,br01611,ko00000,ko00001,ko00002,ko01000,ko03011,ko03021,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDNA-directed RNA polymerase, subunit N/Rpb10
Ec32 orthologEc-15_003650.1
Exons1
Model size216
Cds size216
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929716.529421-CDS-H-elongata_contig121728:73..2891622929716.529421-CDS-H-elongata_contig121728:73..289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121728 74..289 +
1691679130.1973312-CDS-H-elongata_contig121728:73..2891691679130.1973312-CDS-H-elongata_contig121728:73..289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121728 74..289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121728.1661.1prot_H-elongata_contig121728.1661.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121728 74..289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121728.1661.1

>prot_H-elongata_contig121728.1661.1 ID=prot_H-elongata_contig121728.1661.1|Name=mRNA_H-elongata_contig121728.1661.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MIIPVRCFTCGRVIGNKWETYLSLLQADFNEGDALDELGLKRYCCRRMVL
THVDLIEKLLNYNCKWRRLKK*
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mRNA from alignment at H-elongata_contig121728:74..289+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121728.1661.1 ID=mRNA_H-elongata_contig121728.1661.1|Name=mRNA_H-elongata_contig121728.1661.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig121728:74..289+ (Himanthalia elongata Himel1 dioecious)
ATGATTATCCCAGTACGCTGCTTCACTTGTGGGAGGGTGATCGGCAACAA
GTGGGAGACGTACCTTAGCCTCCTGCAGGCGGACTTCAACGAAGGCGATG
CGTTGGACGAGCTGGGGCTCAAGCGGTACTGCTGCCGACGGATGGTGCTC
ACGCATGTTGACTTGATTGAGAAGCTCCTCAACTATAATTGTAAGTGGCG
TAGGTTGAAAAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig121728:74..289+

>mRNA_H-elongata_contig121728.1661.1 ID=mRNA_H-elongata_contig121728.1661.1|Name=mRNA_H-elongata_contig121728.1661.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig121728:74..289+ (Himanthalia elongata Himel1 dioecious)
ATGATTATCCCAGTACGCTGCTTCACTTGTGGGAGGGTGATCGGCAACAA
GTGGGAGACGTACCTTAGCCTCCTGCAGGCGGACTTCAACGAAGGCGATG
CGTTGGACGAGCTGGGGCTCAAGCGGTACTGCTGCCGACGGATGGTGCTC
ACGCATGTTGACTTGATTGAGAAGCTCCTCAACTATAATTGTAAGTGGCG
TAGGTTGAAAAAGTGAATGATTATCCCAGTACGCTGCTTCACTTGTGGGA
GGGTGATCGGCAACAAGTGGGAGACGTACCTTAGCCTCCTGCAGGCGGAC
TTCAACGAAGGCGATGCGTTGGACGAGCTGGGGCTCAAGCGGTACTGCTG
CCGACGGATGGTGCTCACGCATGTTGACTTGATTGAGAAGCTCCTCAACT
ATAATTGTAAGTGGCGTAGGTTGAAAAAGTGA
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